mRNA_L-elsbetiae_contig2041.6148.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2041.6148.1
Unique NamemRNA_L-elsbetiae_contig2041.6148.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2041.6148.1 vs. uniprot
Match: A0A6H5JCE6_9PHAE (2OG-FeII_Oxy_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCE6_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 9.980e-9
Identity = 51/132 (38.64%), Postives = 63/132 (47.73%), Query Frame = 2 
Query:   86 MGRSRICGVCYLA---LTVPVVTVTSWGGSGIYGGSTSXXXXXTRRCATRSVR---SGAWGVATQKRKRTGVPSSSSSSVLVPRRTSSSLKVSDAGVDIGLDSDLELGEGEELLGTIDVSPEEIAELFAKPT 463
            M R  +   C+LA   +  P   V SWG S     ++S     +  C T S      G W VA    +               RR  S LK    G D+G+   +ELGEGEELLGT+DVSPEE+AE FAKPT
Sbjct:    1 MPRPSVRATCFLAAVSMNQPQ-GVISWGAS--LKAASSRHGAGSIPCTTSSTTCLGGGVWNVAAPSER---------------RRRLSRLKAGGVGSDVGVGXXMELGEGEELLGTVDVSPEEVAEFFAKPT 114
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2041.6148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JCE6_9PHAE9.980e-938.642OG-FeII_Oxy_3 domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2041contigL-elsbetiae_contig2041:21177..22010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size466
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2041.6148.1prot_L-elsbetiae_contig2041.6148.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2041 21630..22010 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815842.637037-UTR-L-elsbetiae_contig2041:21176..212601622815842.637037-UTR-L-elsbetiae_contig2041:21176..21260Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2041 21177..21260 +
1691683139.8629878-UTR-L-elsbetiae_contig2041:21176..212601691683139.8629878-UTR-L-elsbetiae_contig2041:21176..21260Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2041 21177..21260 +
1622815842.6493797-UTR-L-elsbetiae_contig2041:21628..216291622815842.6493797-UTR-L-elsbetiae_contig2041:21628..21629Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2041 21629..21629 +
1691683139.876108-UTR-L-elsbetiae_contig2041:21628..216291691683139.876108-UTR-L-elsbetiae_contig2041:21628..21629Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2041 21629..21629 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815842.6609974-CDS-L-elsbetiae_contig2041:21629..220101622815842.6609974-CDS-L-elsbetiae_contig2041:21629..22010Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2041 21630..22010 +
1691683139.8890138-CDS-L-elsbetiae_contig2041:21629..220101691683139.8890138-CDS-L-elsbetiae_contig2041:21629..22010Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2041 21630..22010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2041.6148.1

>prot_L-elsbetiae_contig2041.6148.1 ID=prot_L-elsbetiae_contig2041.6148.1|Name=mRNA_L-elsbetiae_contig2041.6148.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
MGRSRICGVCYLALTVPVVTVTSWGGSGIYGGSTSGGGGGTRRCATRSVR
SGAWGVATQKRKRTGVPSSSSSSVLVPRRTSSSLKVSDAGVDIGLDSDLE
LGEGEELLGTIDVSPEEIAELFAKPT*
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mRNA from alignment at L-elsbetiae_contig2041:21177..22010+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2041.6148.1 ID=mRNA_L-elsbetiae_contig2041.6148.1|Name=mRNA_L-elsbetiae_contig2041.6148.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig2041:21177..22010+ (Laminarionema elsbetiae ELsaHSoW15)
TGGCTGCTGGTGATTATCGATCGCGGTTGCAGCGGCTGGCTCAGGCCTGG
AGACGAAGTTAATCGACGAGCTGCCTTCCTCAACGTAGGTAATCTGTTGC
ATCACACGTCTCTTCATGAGAGAACTTCCACCGACCTCTTGCAACATCAT
GCACACCTATCTACATGTACACAAAGCAACCAAACGAATTTCGCTGCACG
ACGACCTGACACCTCGTAAAATACACCTAATGAAGTACGTCTAGCGTGTG
TGCTGAACTTCCGGACTTCTGGCTAAAACATCTCGGTTTCAAAGAGTCAC
TGCAGTGCAATACATGCATGTCACCCGTTTGCAGCTCGGACGGCCGTGTG
TTGTCTGTCGTGTCTCTTAATTAAACAAACCGCTGTGTCCTTGGATACAT
AGACAAATACTTGTTTGTTCCTCTCTTTGCCCCACTCTCTTCCCATCAGC
AGTATGGGAAGGTCCAGGATATGCGGGGTATGTTATCTCGCATTGACCGT
TCCAGTGGTGACCGTCACCTCTTGGGGGGGGTCAGGGATATACGGCGGTA
GCACGAGCGGCGGCGGCGGCGGCACAAGGCGATGCGCAACACGGTCGGTA
CGGAGTGGCGCCTGGGGTGTAGCCACACAAAAGCGAAAAAGAACGGGAGT
ACCGTCATCATCATCATCGTCGGTTTTGGTGCCGCGGCGAACAAGTTCTT
CGCTGAAAGTCTCGGACGCAGGGGTGGACATCGGCCTCGATTCCGACTTG
GAGCTTGGCGAGGGCGAAGAGCTCCTGGGCACCATTGACGTTTCTCCCGA
GGAGATTGCAGAGTTATTCGCGAAGCCCACGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2041:21177..22010+

>mRNA_L-elsbetiae_contig2041.6148.1 ID=mRNA_L-elsbetiae_contig2041.6148.1|Name=mRNA_L-elsbetiae_contig2041.6148.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig2041:21177..22010+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAAGGTCCAGGATATGCGGGGTATGTTATCTCGCATTGACCGTTCC
AGTGGTGACCGTCACCTCTTGGGGGGGGTCAGGGATATACGGCGGTAGCA
CGAGCGGCGGCGGCGGCGGCACAAGGCGATGCGCAACACGGTCGGTACGG
AGTGGCGCCTGGGGTGTAGCCACACAAAAGCGAAAAAGAACGGGAGTACC
GTCATCATCATCATCGTCGGTTTTGGTGCCGCGGCGAACAAGTTCTTCGC
TGAAAGTCTCGGACGCAGGGGTGGACATCGGCCTCGATTCCGACTTGGAG
CTTGGCGAGGGCGAAGAGCTCCTGGGCACCATTGACGTTTCTCCCGAGGA
GATTGCAGAGTTATTCGCGAAGCCCACGTGAATGGGAAGGTCCAGGATAT
GCGGGGTATGTTATCTCGCATTGACCGTTCCAGTGGTGACCGTCACCTCT
TGGGGGGGGTCAGGGATATACGGCGGTAGCACGAGCGGCGGCGGCGGCGG
CACAAGGCGATGCGCAACACGGTCGGTACGGAGTGGCGCCTGGGGTGTAG
CCACACAAAAGCGAAAAAGAACGGGAGTACCGTCATCATCATCATCGTCG
GTTTTGGTGCCGCGGCGAACAAGTTCTTCGCTGAAAGTCTCGGACGCAGG
GGTGGACATCGGCCTCGATTCCGACTTGGAGCTTGGCGAGGGCGAAGAGC
TCCTGGGCACCATTGACGTTTCTCCCGAGGAGATTGCAGAGTTATTCGCG
AAGCCCACGTGA
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