mRNA_L-elsbetiae_contig20353.6123.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20353.6123.1
Unique NamemRNA_L-elsbetiae_contig20353.6123.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig20353.6123.1 vs. uniprot
Match: D8LT33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT33_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 2.050e-66
Identity = 113/145 (77.93%), Postives = 125/145 (86.21%), Query Frame = 1
Query:    1 MEVVKTRMQLQGELVLRGGGGDAGKSRGQ-QAYKAPYRNAPHAFYKICRDEGFRGIQAGLLPGLMYQVLMNGTRLSLFAPVQAALGVVDAESNGKVAFFLRNLAAGAACGAMGALVGSPLFLIKARLQSQSTAHTLRTAGAGEFR 432
            M+VVKTRMQLQ ELVLR     AG+S+   Q Y+APY+NA HAFYKICRDEG RGIQAGLLPGLMYQ+LMNGTRLSLFAPVQ ALGV DAE+ GK+ FF RNLAAGAACGA GAL+GSP+FL+KARLQSQS AH+LRTAG GEFR
Sbjct:   78 MDVVKTRMQLQSELVLR----KAGQSQQTTQVYRAPYKNALHAFYKICRDEGVRGIQAGLLPGLMYQILMNGTRLSLFAPVQKALGV-DAENKGKIGFFFRNLAAGAACGAAGALIGSPVFLVKARLQSQSKAHSLRTAGGGEFR 217          
BLAST of mRNA_L-elsbetiae_contig20353.6123.1 vs. uniprot
Match: A0A6H5L6Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z3_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 7.480e-65
Identity = 110/145 (75.86%), Postives = 122/145 (84.14%), Query Frame = 1
Query:    1 MEVVKTRMQLQGELVLRGGGGDAGKSRGQ-QAYKAPYRNAPHAFYKICRDEGFRGIQAGLLPGLMYQVLMNGTRLSLFAPVQAALGVVDAESNGKVAFFLRNLAAGAACGAMGALVGSPLFLIKARLQSQSTAHTLRTAGAGEFR 432
            M+VVKTRMQLQ ELVLR     AG+SR   Q Y+APY+NA HAFYKICRDEG RGIQAGLLPG+MYQ+LMNGTRLSLFAPVQ  LGV D E+ GK+ FF RNLAAGAACGA GAL+ SP+FL+KARLQSQS AH+LRTAG GEFR
Sbjct:    1 MDVVKTRMQLQSELVLR----KAGQSRQMTQVYRAPYKNALHAFYKICRDEGVRGIQAGLLPGIMYQILMNGTRLSLFAPVQKVLGV-DVENKGKIGFFFRNLAAGAACGAAGALIASPVFLVKARLQSQSKAHSLRTAGGGEFR 140          
BLAST of mRNA_L-elsbetiae_contig20353.6123.1 vs. uniprot
Match: A0A835YMV3_9STRA (Solute carrier family 25 member 34 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMV3_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.410e-41
Identity = 84/143 (58.74%), Postives = 100/143 (69.93%), Query Frame = 1
Query:    1 MEVVKTRMQLQGELVLRGGGGDAGKSRGQQAYKAPYRNAPHAFYKICRDEGFRGIQAGLLPGLMYQVLMNGTRLSLFAPVQAALGVVDAESNGKVAFFLRNLAAGAACGAMGALVGSPLFLIKARLQSQSTAHTLRTAGAGEF 429
            MEVVKTR QLQGEL          KS   + YK  +     AFYKI RDEG RGIQAGLLPG++YQ  MNGTRL +FAP+Q  L   DA+++G+V+FF +NLAAGA  GA GA VGSP FL+KARLQ QS+ H +R+AGA  F
Sbjct:    1 MEVVKTRFQLQGELA---------KSSPNRIYKHVF----DAFYKIARDEGLRGIQAGLLPGILYQSTMNGTRLGMFAPLQRFLKA-DAKTDGQVSFFFKNLAAGAISGACGAAVGSPFFLVKARLQGQSSVHKIRSAGAEVF 129          
BLAST of mRNA_L-elsbetiae_contig20353.6123.1 vs. uniprot
Match: A0A484E3G6_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E3G6_BRELC)

HSP 1 Score: 127 bits (318), Expect = 6.140e-33
Identity = 71/132 (53.79%), Postives = 84/132 (63.64%), Query Frame = 1
Query:    1 MEVVKTRMQLQGELVLRGGGGDAGKSRGQQAYKAPYRNAPHAFYKICRDEGFRGIQAGLLPGLMYQVLMNGTRLSLFAPVQAALGVVDAESNGKVAFFLRNLAAGAACGAMGALVGSPLFLIKARLQSQSTA 396
            MEV+KTRMQLQGEL      G     R        YRN  HAFY ICR EG RGIQ GLLPG+ YQ+ MNG RL LFAP+Q  +G  D  S   V F +RN+ A A  G +GA +GSP +L+KAR+Q+ STA
Sbjct:   27 MEVIKTRMQLQGELAHNVTSGSVPVVR--------YRNFAHAFYTICRTEGLRGIQRGLLPGISYQIFMNGPRLGLFAPLQKVVGATDPTS---VWFPVRNVCAAATSGMIGACIGSPFYLVKARIQAASTA 147          
BLAST of mRNA_L-elsbetiae_contig20353.6123.1 vs. uniprot
Match: A0A024UT24_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UT24_9STRA)

HSP 1 Score: 125 bits (313), Expect = 5.290e-32
Identity = 73/137 (53.28%), Postives = 86/137 (62.77%), Query Frame = 1
Query:    1 MEVVKTRMQLQGELVLRGGGGDAGKSRGQQAYKAP--YRNAPHAFYKICRDEGFRGIQAGLLPGLMYQVLMNGTRLSLFAPVQAALGVVDAESNGKVAFFLRNLAAGAACGAMGALVGSPLFLIKARLQSQSTAHTL 405
            MEVVKTRMQLQGEL  +G               AP  YRN+ HAFY ICR EG  GIQ GL+ G+ YQ  MNG RL  F  +Q   G  D       +F LRN+AAGA  GA+GA++GSP FL+KARLQ+QSTA T+
Sbjct:   35 MEVVKTRMQLQGELASKG---------------APIVYRNSIHAFYTICRLEGIAGIQRGLVAGMCYQSFMNGARLGFFEKLQQVFGATDPNH---FSFPLRNMAAGATSGAVGAMMGSPFFLVKARLQAQSTAATI 153          
BLAST of mRNA_L-elsbetiae_contig20353.6123.1 vs. uniprot
Match: A0A6G0XPW9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPW9_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.940e-31
Identity = 72/137 (52.55%), Postives = 85/137 (62.04%), Query Frame = 1
Query:    1 MEVVKTRMQLQGELVLRGGGGDAGKSRGQQAYKAP--YRNAPHAFYKICRDEGFRGIQAGLLPGLMYQVLMNGTRLSLFAPVQAALGVVDAESNGKVAFFLRNLAAGAACGAMGALVGSPLFLIKARLQSQSTAHTL 405
            MEVVKTRMQLQGEL  +G               AP  YRN+ HAFY ICR EG  GIQ GL  G+ YQ  MNG RL LF  +Q   G  D  S    ++ LRN+ AGA  GA+GA++GSP FL+KARLQ+QS A T+
Sbjct:   33 MEVVKTRMQLQGELAAKG---------------APIVYRNSFHAFYTICRLEGIAGIQRGLTAGMFYQTFMNGARLGLFEHLQRVYGATDPTS---YSYPLRNMLAGATSGAIGAIMGSPFFLVKARLQAQSNASTI 151          
BLAST of mRNA_L-elsbetiae_contig20353.6123.1 vs. uniprot
Match: A0A6A5AIL5_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AIL5_9STRA)

HSP 1 Score: 123 bits (308), Expect = 3.120e-31
Identity = 72/134 (53.73%), Postives = 84/134 (62.69%), Query Frame = 1
Query:    1 MEVVKTRMQLQGELVLRGGGGDAGKSRGQQAYKAP--YRNAPHAFYKICRDEGFRGIQAGLLPGLMYQVLMNGTRLSLFAPVQAALGVVDAESNGKVAFFLRNLAAGAACGAMGALVGSPLFLIKARLQSQSTA 396
            MEVVKTRMQLQGEL  RG               AP  YRN+ HAFY ICR EG  GIQ GL+ G+ YQ  MNG RL  F  +Q   G  D       +F LRN+AAGA  GA+GA++GSP FL+KARLQ+QS+A
Sbjct:   56 MEVVKTRMQLQGELAARG---------------APIVYRNSFHAFYTICRLEGIAGIQRGLVAGMFYQSFMNGARLGFFEQLQQVYGATDPNH---YSFPLRNMAAGATSGALGAIMGSPFFLVKARLQAQSSA 171          
BLAST of mRNA_L-elsbetiae_contig20353.6123.1 vs. uniprot
Match: A0A1V9Z179_9STRA (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9Z179_9STRA)

HSP 1 Score: 119 bits (299), Expect = 4.080e-30
Identity = 71/137 (51.82%), Postives = 84/137 (61.31%), Query Frame = 1
Query:    1 MEVVKTRMQLQGELVLRGGGGDAGKSRGQQAYKAP--YRNAPHAFYKICRDEGFRGIQAGLLPGLMYQVLMNGTRLSLFAPVQAALGVVDAESNGKVAFFLRNLAAGAACGAMGALVGSPLFLIKARLQSQSTAHTL 405
            MEVVKTRMQLQGEL   G               AP  YRN+ HAFY I R EG RGIQ GL+ G+ YQ +MNG RL  F P+Q   G  D       +F  RN+ AGA  GA+GA++GSP FL+KARLQ+QS A T+
Sbjct:   32 MEVVKTRMQLQGELAATG---------------APTVYRNSFHAFYTIARAEGVRGIQRGLVAGMAYQTVMNGVRLGGFEPLQKIYGATDPNH---YSFVPRNMLAGATSGAIGAMLGSPFFLVKARLQAQSNATTI 150          
BLAST of mRNA_L-elsbetiae_contig20353.6123.1 vs. uniprot
Match: D0MSA3_PHYIT (Mitochondrial Carrier (MC) Family n=2 Tax=Phytophthora TaxID=4783 RepID=D0MSA3_PHYIT)

HSP 1 Score: 116 bits (290), Expect = 7.410e-30
Identity = 68/135 (50.37%), Postives = 82/135 (60.74%), Query Frame = 1
Query:    1 MEVVKTRMQLQGEL---VLRGGGGDAGKSRGQQAYKAPYRNAPHAFYKICRDEGFRGIQAGLLPGLMYQVLMNGTRLSLFAPVQAALGVVDAESNGKVAFFLRNLAAGAACGAMGALVGSPLFLIKARLQSQSTA 396
            MEV+KTRMQLQGEL   V RG            A    YRN  HAFY I R EG RGIQ GL PG+ YQ+ MNG RL LF P+Q   G  D  +    +F +RN+ A A  G +GA +GSP FL+KAR+Q+ S+A
Sbjct:    1 MEVIKTRMQLQGELAHNVTRGA-----------APVVQYRNFAHAFYTIGRTEGLRGIQRGLGPGISYQIFMNGPRLGLFEPMQKVFGATDPTA---YSFPIRNVCAAATSGMIGAFIGSPFFLVKARIQAASSA 121          
BLAST of mRNA_L-elsbetiae_contig20353.6123.1 vs. uniprot
Match: A0A662XF87_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XF87_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.430e-29
Identity = 72/141 (51.06%), Postives = 87/141 (61.70%), Query Frame = 1
Query:    1 MEVVKTRMQLQGEL---VLRGGGGDAGKSRGQQAYKAP---YRNAPHAFYKICRDEGFRGIQAGLLPGLMYQVLMNGTRLSLFAPVQAALGVVDAESNGKVAFFLRNLAAGAACGAMGALVGSPLFLIKARLQSQSTAHTL 405
            MEVVKTRMQLQGEL   + RGG           A   P   YRN  HAFY I R EG RGIQ GL PG+ YQV MNG RL LF P+Q   G  D  +    +F +RN+ A A  G +GA +GSP FL+KAR+Q+ S+AH++
Sbjct:  304 MEVVKTRMQLQGELAHNLTRGG-----------AVATPVMQYRNFAHAFYTIGRTEGLRGIQRGLGPGISYQVFMNGPRLGLFEPLQKVYGATDPTA---YSFPIRNVCAAATSGMIGAFIGSPFFLVKARIQAASSAHSI 430          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20353.6123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT33_ECTSI2.050e-6677.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6Z3_9PHAE7.480e-6575.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YMV3_9STRA1.410e-4158.74Solute carrier family 25 member 34 n=1 Tax=Tribone... [more]
A0A484E3G6_BRELC6.140e-3353.79Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A024UT24_9STRA5.290e-3253.28Uncharacterized protein n=4 Tax=Aphanomyces invada... [more]
A0A6G0XPW9_9STRA1.940e-3152.55Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6A5AIL5_9STRA3.120e-3153.73Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A1V9Z179_9STRA4.080e-3051.82Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
D0MSA3_PHYIT7.410e-3050.37Mitochondrial Carrier (MC) Family n=2 Tax=Phytopht... [more]
A0A662XF87_9STRA1.430e-2951.06Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20353contigL-elsbetiae_contig20353:258..1053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.1
Seed ortholog evalue1.1e-53
Seed eggNOG ortholog2880.D8LT33
Preferred nameSLC25A34
KEGG koko:K15117,ko:K15348
KEGG TC2.A.29.15
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006839,GO:0008150,GO:0016020,GO:0016021,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0055085
EggNOG free text desc.isopropylmalate transmembrane transporter activity
EggNOG OGsKOG0755@1,KOG0755@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04131
Ec32 ortholog descriptionMitochondrial carrier domain
Ec32 orthologEc-08_003970.1
Exons2
Model size435
Cds size435
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815840.3181837-CDS-L-elsbetiae_contig20353:257..4941622815840.3181837-CDS-L-elsbetiae_contig20353:257..494Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20353 258..494 -
1691683138.2646377-CDS-L-elsbetiae_contig20353:257..4941691683138.2646377-CDS-L-elsbetiae_contig20353:257..494Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20353 258..494 -
1622815840.330571-CDS-L-elsbetiae_contig20353:855..10531622815840.330571-CDS-L-elsbetiae_contig20353:855..1053Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20353 856..1053 -
1691683138.2765186-CDS-L-elsbetiae_contig20353:855..10531691683138.2765186-CDS-L-elsbetiae_contig20353:855..1053Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20353 856..1053 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20353.6123.1prot_L-elsbetiae_contig20353.6123.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20353 258..1053 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20353.6123.1

>prot_L-elsbetiae_contig20353.6123.1 ID=prot_L-elsbetiae_contig20353.6123.1|Name=mRNA_L-elsbetiae_contig20353.6123.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=145bp
MEVVKTRMQLQGELVLRGGGGDAGKSRGQQAYKAPYRNAPHAFYKICRDE
GFRGIQAGLLPGLMYQVLMNGTRLSLFAPVQAALGVVDAESNGKVAFFLR
NLAAGAACGAMGALVGSPLFLIKARLQSQSTAHTLRTAGAGEFR*
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mRNA from alignment at L-elsbetiae_contig20353:258..1053-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20353.6123.1 ID=mRNA_L-elsbetiae_contig20353.6123.1|Name=mRNA_L-elsbetiae_contig20353.6123.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=796bp|location=Sequence derived from alignment at L-elsbetiae_contig20353:258..1053- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGTGGTCAAGACCCGCATGCAGCTGCAGGGCGAGCTGGTGCTCCG CGGCGGCGGCGGCGACGCCGGCAAAAGCCGGGGGCAGCAGGCCTACAAAG CCCCGTACCGTAATGCCCCCCACGCGTTCTACAAGATCTGCCGGGACGAG GGGTTTCGAGGGATTCAGGCGGGGCTGCTGCCGGGGCTCATGTACCAGGT GCGTTTCTGACCCTACTACATACGTACGCACGCATATTGTAGCCTCGGGT GCGGTCTGATCCATGAGCTACCCCCTGCTGTAGTATCTTGTCGGTTCTCC CCCCCCTCTCTCTCTCACTCGTACATGTGTATGTATCTCCCTGCCTCACA CACGTTGTCTCGCGTTTGTTTCCCCTCGGGCCCGTGTCACGCTCACGGCT CCGTTTCTCGACACGGCCACCACCCACTGCTGTACACGCCCGCCCGCCCC CCGCCCGCCCGCCTGCCTGCCCTCACGCGCTTGATTCGCATGCATTTTTT TCTGCTTTTTCTTCTGCTTTTTTTTTCCCTCTTCTCCTTCTTCTTCAAAT TGTCAACAGGTGTTGATGAACGGCACGCGGCTGTCCTTGTTCGCGCCGGT GCAGGCCGCCCTCGGCGTCGTCGATGCCGAGAGCAACGGTAAGGTGGCGT TCTTCCTCCGGAACCTGGCGGCCGGGGCGGCGTGCGGGGCGATGGGCGCG CTGGTCGGGTCCCCCCTGTTCCTCATCAAGGCGAGGCTGCAGAGCCAGTC TACCGCGCATACCCTCAGGACGGCCGGGGCAGGAGAGTTCAGGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20353:258..1053-

>mRNA_L-elsbetiae_contig20353.6123.1 ID=mRNA_L-elsbetiae_contig20353.6123.1|Name=mRNA_L-elsbetiae_contig20353.6123.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=870bp|location=Sequence derived from alignment at L-elsbetiae_contig20353:258..1053- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGTGGTCAAGACCCGCATGCAGCTGCAGGGCGAGCTGGTGCTCCG
CGGCGGCGGCGGCGACGCCGGCAAAAGCCGGGGGCAGCAGGCCTACAAAG
CCCCGTACCGTAATGCCCCCCACGCGTTCTACAAGATCTGCCGGGACGAG
GGGTTTCGAGGGATTCAGGCGGGGCTGCTGCCGGGGCTCATGTACCAGAT
GGAGGTGGTCAAGACCCGCATGCAGCTGCAGGGCGAGCTGGTGCTCCGCG
GCGGCGGCGGCGACGCCGGCAAAAGCCGGGGGCAGCAGGCCTACAAAGCC
CCGTACCGTAATGCCCCCCACGCGTTCTACAAGATCTGCCGGGACGAGGG
GTTTCGAGGGATTCAGGCGGGGCTGCTGCCGGGGCTCATGTACCAGGTGT
TGATGAACGGCACGCGGCTGTCCTTGTTCGCGCCGGTGCAGGCCGCCCTC
GGCGTCGTCGATGCCGAGAGCAACGGTAAGGTGGCGTTCTTCCTCCGGAA
CCTGGCGGCCGGGGCGGCGTGCGGGGCGATGGGCGCGCTGGTCGGGTCCC
CCCTGTTCCTCATCAAGGCGAGGCTGCAGAGCCAGTCTACCGCGCATACC
CTCAGGACGGCCGGGGCAGGAGAGTTCAGGTAAGTGTTGATGAACGGCAC
GCGGCTGTCCTTGTTCGCGCCGGTGCAGGCCGCCCTCGGCGTCGTCGATG
CCGAGAGCAACGGTAAGGTGGCGTTCTTCCTCCGGAACCTGGCGGCCGGG
GCGGCGTGCGGGGCGATGGGCGCGCTGGTCGGGTCCCCCCTGTTCCTCAT
CAAGGCGAGGCTGCAGAGCCAGTCTACCGCGCATACCCTCAGGACGGCCG
GGGCAGGAGAGTTCAGGTAA
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