mRNA_L-elsbetiae_contig2020.6075.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2020.6075.1
Unique NamemRNA_L-elsbetiae_contig2020.6075.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2020.6075.1 vs. uniprot
Match: D7G1Z1_ECTSI (C2H2 and CCCH zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Z1_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.720e-28
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:   28 NTGGLYLGPVRRPLNADCEFFDAGNINRALLCKINVFAIISGGGDAMDFDDHQRSYGCMFHNCSSTFSSLRR 243
            +TGGLYLGPV RPL++D EFFD GN NRALLCK+NVFAI+S G DAMD  + Q  + CMF +C++TFSSL+R
Sbjct:    8 STGGLYLGPVLRPLSSDSEFFDEGNTNRALLCKLNVFAIMSEGADAMDLHEDQHQFECMFQDCTATFSSLKR 79
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2020.6075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1Z1_ECTSI1.720e-2866.67C2H2 and CCCH zinc finger protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2020contigL-elsbetiae_contig2020:21680..21937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue6.5e-22
Seed eggNOG ortholog2880.D7G1Z1
Preferred nameZNF511
Hectar predicted targeting categoryother localisation
GOsGO:0000981,GO:0003674,GO:0003700,GO:0006355,GO:0006357,GO:0007275,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032501,GO:0032502,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.zinc finger
EggNOG OGsKOG4173@1,KOG4173@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionC2H2 and CCCH zinc finger protein
Ec32 orthologEc-07_003620.1
Exons1
Model size258
Cds size258
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815835.67705-CDS-L-elsbetiae_contig2020:21679..219371622815835.67705-CDS-L-elsbetiae_contig2020:21679..21937Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2020 21680..21937 +
1691683135.0421355-CDS-L-elsbetiae_contig2020:21679..219371691683135.0421355-CDS-L-elsbetiae_contig2020:21679..21937Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2020 21680..21937 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2020.6075.1prot_L-elsbetiae_contig2020.6075.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2020 21680..21937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2020.6075.1

>prot_L-elsbetiae_contig2020.6075.1 ID=prot_L-elsbetiae_contig2020.6075.1|Name=mRNA_L-elsbetiae_contig2020.6075.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=86bp
MKSDNETPTNTGGLYLGPVRRPLNADCEFFDAGNINRALLCKINVFAIIS
GGGDAMDFDDHQRSYGCMFHNCSSTFSSLRRVSLD*
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mRNA from alignment at L-elsbetiae_contig2020:21680..21937+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2020.6075.1 ID=mRNA_L-elsbetiae_contig2020.6075.1|Name=mRNA_L-elsbetiae_contig2020.6075.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=258bp|location=Sequence derived from alignment at L-elsbetiae_contig2020:21680..21937+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGAGCGACAATGAGACGCCTACCAACACTGGTGGGTTGTACCTCGG
CCCCGTTCGGAGGCCGCTAAACGCTGACTGTGAGTTCTTCGATGCCGGAA
ACATCAATCGAGCCCTGCTCTGCAAGATTAACGTGTTTGCCATCATCAGC
GGGGGAGGTGACGCGATGGACTTCGACGATCACCAGCGGAGCTATGGGTG
CATGTTTCATAACTGCTCCTCCACATTTTCATCCCTTCGACGGGTGAGTC
TTGACTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2020:21680..21937+

>mRNA_L-elsbetiae_contig2020.6075.1 ID=mRNA_L-elsbetiae_contig2020.6075.1|Name=mRNA_L-elsbetiae_contig2020.6075.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig2020:21680..21937+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGAGCGACAATGAGACGCCTACCAACACTGGTGGGTTGTACCTCGG
CCCCGTTCGGAGGCCGCTAAACGCTGACTGTGAGTTCTTCGATGCCGGAA
ACATCAATCGAGCCCTGCTCTGCAAGATTAACGTGTTTGCCATCATCAGC
GGGGGAGGTGACGCGATGGACTTCGACGATCACCAGCGGAGCTATGGGTG
CATGTTTCATAACTGCTCCTCCACATTTTCATCCCTTCGACGGGTGAGTC
TTGACTAGATGAAGAGCGACAATGAGACGCCTACCAACACTGGTGGGTTG
TACCTCGGCCCCGTTCGGAGGCCGCTAAACGCTGACTGTGAGTTCTTCGA
TGCCGGAAACATCAATCGAGCCCTGCTCTGCAAGATTAACGTGTTTGCCA
TCATCAGCGGGGGAGGTGACGCGATGGACTTCGACGATCACCAGCGGAGC
TATGGGTGCATGTTTCATAACTGCTCCTCCACATTTTCATCCCTTCGACG
GGTGAGTCTTGACTAG
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