mRNA_L-elsbetiae_contig20158.6063.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20158.6063.1
Unique NamemRNA_L-elsbetiae_contig20158.6063.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20158.6063.1 vs. uniprot
Match: D7FMV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV8_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.750e-20
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 MSGTGFVTFKCLSGRACAVSTLVSNRPEVFNLTPAPEPRDIVW 129
            MSGTGFVTFKCLSGRACAVSTLV+NRPEVFNLTPAPEPRDIVW
Sbjct: 1431 MSGTGFVTFKCLSGRACAVSTLVTNRPEVFNLTPAPEPRDIVW 1473
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BLAST of mRNA_L-elsbetiae_contig20158.6063.1 vs. uniprot
Match: A0A6H5KIL5_9PHAE (ERD protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL5_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.140e-19
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    1 MSGTGFVTFKCLSGRACAVSTLVSNRPEVFNLTPAPEPRDIVW 129
            MSGTGFVTFKCLSGRACAVSTLV+NRPEVFNL PAPEPRDIVW
Sbjct: 1187 MSGTGFVTFKCLSGRACAVSTLVTNRPEVFNLKPAPEPRDIVW 1229
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BLAST of mRNA_L-elsbetiae_contig20158.6063.1 vs. uniprot
Match: A0A7S0UJ14_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UJ14_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 5.710e-6
Identity = 22/43 (51.16%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 MSGTGFVTFKCLSGRACAVSTLVSNRPEVFNLTPAPEPRDIVW 129
            MS TGFVTF  L+    A ST ++++P+V ++T APEP+DI+W
Sbjct:  475 MSSTGFVTFLDLTSLTTAASTPLTSKPQVLDVTVAPEPKDIIW 517
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20158.6063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMV8_ECTSI1.750e-2097.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIL5_9PHAE1.140e-1995.35ERD protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A7S0UJ14_9STRA5.710e-651.16Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20158contigL-elsbetiae_contig20158:760..891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue8.5e-18
Seed eggNOG ortholog2880.D7FMV8
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.ion transport
EggNOG OGsCOG5594@1,KOG1134@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size132
Cds size132
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.861586-CDS-L-elsbetiae_contig20158:759..8911622815833.861586-CDS-L-elsbetiae_contig20158:759..891Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20158 760..891 -
1691683133.6196349-CDS-L-elsbetiae_contig20158:759..8911691683133.6196349-CDS-L-elsbetiae_contig20158:759..891Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20158 760..891 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20158.6063.1prot_L-elsbetiae_contig20158.6063.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20158 760..891 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20158.6063.1

>prot_L-elsbetiae_contig20158.6063.1 ID=prot_L-elsbetiae_contig20158.6063.1|Name=mRNA_L-elsbetiae_contig20158.6063.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=44bp
MSGTGFVTFKCLSGRACAVSTLVSNRPEVFNLTPAPEPRDIVW*
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mRNA from alignment at L-elsbetiae_contig20158:760..891-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20158.6063.1 ID=mRNA_L-elsbetiae_contig20158.6063.1|Name=mRNA_L-elsbetiae_contig20158.6063.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=132bp|location=Sequence derived from alignment at L-elsbetiae_contig20158:760..891- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGGGCACGGGGTTCGTGACGTTCAAGTGCCTGTCCGGGCGCGCGTG
CGCCGTGTCCACCCTCGTCTCCAACCGGCCCGAGGTGTTCAACCTCACGC
CCGCGCCGGAGCCTCGAGACATTGTCTGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20158:760..891-

>mRNA_L-elsbetiae_contig20158.6063.1 ID=mRNA_L-elsbetiae_contig20158.6063.1|Name=mRNA_L-elsbetiae_contig20158.6063.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=264bp|location=Sequence derived from alignment at L-elsbetiae_contig20158:760..891- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGGGCACGGGGTTCGTGACGTTCAAGTGCCTGTCCGGGCGCGCGTG
CGCCGTGTCCACCCTCGTCTCCAACCGGCCCGAGGTGTTCAACCTCACGC
CCGCGCCGGAGCCTCGAGACATTGTCTGGTGAATGTCGGGCACGGGGTTC
GTGACGTTCAAGTGCCTGTCCGGGCGCGCGTGCGCCGTGTCCACCCTCGT
CTCCAACCGGCCCGAGGTGTTCAACCTCACGCCCGCGCCGGAGCCTCGAG
ACATTGTCTGGTGA
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