mRNA_L-elsbetiae_contig2012.6053.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2012.6053.1
Unique NamemRNA_L-elsbetiae_contig2012.6053.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2012.6053.1 vs. uniprot
Match: D7FT14_ECTSI (Putative AAA family ATP ase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT14_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.800e-8
Identity = 31/49 (63.27%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:  106 YGHSRCSNYYEDEGVMRAGAHGPIPPRLPNGSGLVRKRKRVPLGRLDNN 252
            YG    S+ ++DE   R G   PIPPRLPNG GLVRKRK VP GRLDNN
Sbjct:  109 YGRYGRSSSFDDEANTRGGQGPPIPPRLPNGPGLVRKRKFVPPGRLDNN 157
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BLAST of mRNA_L-elsbetiae_contig2012.6053.1 vs. uniprot
Match: A0A6H5JMF7_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF7_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 6.970e-6
Identity = 30/50 (60.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:  109 GHSR---CSNYYEDEGVMRAGAHGPIPPRLPNGSGLVRKRKRVPLGRLDN 249
            GH R    S+ ++DE   R G    IPPRLPNG GLVRKRK VP GRLDN
Sbjct:  387 GHGRYGSSSSSFDDEVNTRGGQGPSIPPRLPNGPGLVRKRKFVPPGRLDN 436
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2012.6053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FT14_ECTSI1.800e-863.27Putative AAA family ATP ase n=1 Tax=Ectocarpus sil... [more]
A0A6H5JMF7_9PHAE6.970e-660.00AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2012contigL-elsbetiae_contig2012:13890..14840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue3e-07
Seed eggNOG ortholog2880.D7FT14
Preferred nameFIGNL1
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000070,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000287,GO:0000819,GO:0001503,GO:0001649,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006163,GO:0006282,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007059,GO:0007140,GO:0007276,GO:0008150,GO:0008152,GO:0008283,GO:0008568,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009314,GO:0009611,GO:0009628,GO:0009966,GO:0009968,GO:0009987,GO:0010212,GO:0010569,GO:0010646,GO:0010648,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0019219,GO:0019222,GO:0019637,GO:0019693,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023057,GO:0030154,GO:0031110,GO:0031114,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032886,GO:0033043,GO:0033687,GO:0034641,GO:0042623,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043244,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046034,GO:0046483,GO:0046872,GO:0048232,GO:0048285,GO:0048471,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048609,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051013,GO:0051052,GO:0051128,GO:0051171,GO:0051276,GO:0051321,GO:0051493,GO:0051704,GO:0051716,GO:0051726,GO:0055086,GO:0060255,GO:0060548,GO:0065007,GO:0070013,GO:0070507,GO:0071214,GO:0071478,GO:0071479,GO:0071704,GO:0071840,GO:0072521,GO:0080090,GO:0080134,GO:0080135,GO:0098813,GO:0104004,GO:0140013,GO:0140014,GO:0140096,GO:1901135,GO:1901360,GO:1901564,GO:1901879,GO:1902531,GO:1902532,GO:1902903,GO:1903046,GO:1903047,GO:2000779,GO:2001020,GO:2001233,GO:2001234,GO:2001242,GO:2001243
EggNOG free text desc.Belongs to the AAA ATPase family
EggNOG OGsCOG0464@1,KOG0740@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size288
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.040134-CDS-L-elsbetiae_contig2012:13891..140571622815833.040134-CDS-L-elsbetiae_contig2012:13891..14057Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2012 13892..14057 -
1691683133.1288378-CDS-L-elsbetiae_contig2012:13891..140571691683133.1288378-CDS-L-elsbetiae_contig2012:13891..14057Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2012 13892..14057 -
1622815833.054059-CDS-L-elsbetiae_contig2012:14721..148401622815833.054059-CDS-L-elsbetiae_contig2012:14721..14840Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2012 14722..14840 -
1691683133.1394992-CDS-L-elsbetiae_contig2012:14721..148401691683133.1394992-CDS-L-elsbetiae_contig2012:14721..14840Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2012 14722..14840 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2012.6053.1prot_L-elsbetiae_contig2012.6053.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2012 13892..14840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2012.6053.1

>prot_L-elsbetiae_contig2012.6053.1 ID=prot_L-elsbetiae_contig2012.6053.1|Name=mRNA_L-elsbetiae_contig2012.6053.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
GGAARGAWGGGSGYGSYNVDTNGYGGGGGNDGTNGYGHSRCSNYYEDEGV
MRAGAHGPIPPRLPNGSGLVRKRKRVPLGRLDNNNSSSTGGGGKL
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mRNA from alignment at L-elsbetiae_contig2012:13890..14840-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2012.6053.1 ID=mRNA_L-elsbetiae_contig2012.6053.1|Name=mRNA_L-elsbetiae_contig2012.6053.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=951bp|location=Sequence derived from alignment at L-elsbetiae_contig2012:13890..14840- (Laminarionema elsbetiae ELsaHSoW15)
GGTGGAGCAGCACGGGGAGCGTGGGGGGGCGGTAGCGGTTACGGCAGTTA
CAATGTCGATACCAACGGTTACGGCGGTGGCGGGGGAAACGACGGCACCA
ATGGCTACGGCCACAGCAGGTATGCCCCAACACAGAGTAGTACCGGGCAC
GACATGTTTTCTAGTTGCCGCACGCGTTGCTGCTCTCCATGTTAAAAAGA
AGAATATTTCAGATTGATTTTGGACATTTTTTTTTCCCTGCCTGCAAATT
CTCAGCGCTAGCTTAGCGTATAGGAATTTACAGTAATCTTCGAGCGCCTC
TCGCTGTAATGTCGATCCCAATTTTTGCCAGGGCGCTGGCACTACATGCA
CCCACAAAGAATCATGCGCTCCACGTATCGGGGCGATTTGGGCAACACAC
CAGAGGGTGAACAACTCTGAGCTTACGCTTGGTCGGGCCTGGCCGATCTC
ATATTTTTTGTGATGCAGTTGGAGGTGAACACATGGCCTTGCTGCCGTTC
TTTGGCTACCCCGCCGCACGACTGGCATTCAGAGTTGATCTGAGATGCCT
TTTGCAGGCCGACCACTGACCGTCGTAGCTTCAATCCCATTTTTGCCAGG
GTGTTTCTGCTTCTTTGGTTGTGCATCTGCACCGTGGCTGAGTATCAGGC
GATTTCGCAAGTCTACCATGGTACAACATTGTGTTGGAAACTGGCCTCCG
GAGAGCAAGAATATCACCCTCCACGTCGTCTTGCCAATGCACATATTTTT
TGAGTTTTGTTTCTGTCCTGCATGCGTATGCAGGTGTTCCAACTACTACG
AAGACGAGGGGGTTATGCGGGCGGGGGCACACGGCCCCATCCCTCCCCGG
CTCCCCAACGGGTCTGGCCTCGTTCGAAAACGGAAGCGTGTTCCCCTGGG
GCGTCTCGACAACAACAACAGCAGCAGCACCGGCGGCGGAGGAAAATTAC
C
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2012:13890..14840-

>mRNA_L-elsbetiae_contig2012.6053.1 ID=mRNA_L-elsbetiae_contig2012.6053.1|Name=mRNA_L-elsbetiae_contig2012.6053.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig2012:13890..14840- (Laminarionema elsbetiae ELsaHSoW15)
GGTGGAGCAGCACGGGGAGCGTGGGGGGGCGGTAGCGGTTACGGCAGTTA
CAATGTCGATACCAACGGTTACGGCGGTGGCGGGGGAAACGACGGCACCA
ATGGCTACGGCCACAGCAGGGTGGAGCAGCACGGGGAGCGTGGGGGGGCG
GTAGCGGTTACGGCAGTTACAATGTCGATACCAACGGTTACGGCGGTGGC
GGGGGAAACGACGGCACCAATGGCTACGGCCACAGCAGGTGTTCCAACTA
CTACGAAGACGAGGGGGTTATGCGGGCGGGGGCACACGGCCCCATCCCTC
CCCGGCTCCCCAACGGGTCTGGCCTCGTTCGAAAACGGAAGCGTGTTCCC
CTGGGGCGTCTCGACAACAACAACAGCAGCAGCACCGGCGGCGGAGGAAA
ATTAGTGTTCCAACTACTACGAAGACGAGGGGGTTATGCGGGCGGGGGCA
CACGGCCCCATCCCTCCCCGGCTCCCCAACGGGTCTGGCCTCGTTCGAAA
ACGGAAGCGTGTTCCCCTGGGGCGTCTCGACAACAACAACAGCAGCAGCA
CCGGCGGCGGAGGAAAATTA
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