mRNA_L-elsbetiae_contig20108.6047.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20108.6047.1
Unique NamemRNA_L-elsbetiae_contig20108.6047.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20108.6047.1 vs. uniprot
Match: A0A6H5KZ70_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ70_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.480e-23
Identity = 66/124 (53.23%), Postives = 78/124 (62.90%), Query Frame = 1 
Query:    1 MCCWQEW-IPEAKGVGIGAKRRLREIQQLQQIASVCLGIEHLMNKRRRATTGAGGAARARVSPQGQQTRPLCP----DSGDATRPPHXXXXXPQRHHPHQALSCRLCDSTLRVLSIARAHRKRC 357
            MC  +EW  PEA+     AKRRL+E+Q LQ +ASVC+GIEHLMNKRRR+T G GGAAR    P GQQTR        D+GD+    H         H H + SCRLC+STLRVLS A  H +RC
Sbjct:    1 MCSGREWPTPEARPRRSDAKRRLQEVQDLQ-VASVCMGIEHLMNKRRRSTKGRGGAARV-SPPVGQQTRLFRDKSNGDAGDSCSGDHQCGGD----HDHPS-SCRLCESTLRVLSTALLHVRRC 117
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BLAST of mRNA_L-elsbetiae_contig20108.6047.1 vs. uniprot
Match: D7G0D1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0D1_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 8.900e-22
Identity = 69/125 (55.20%), Postives = 80/125 (64.00%), Query Frame = 1 
Query:    1 MCCWQEW-IPEAKGVGIGAKRRLREIQQLQQIASVCLGIEHLMNKRRRATTGAGGAARARVSPQGQQTRPL----CPDSGDATRPPHXXXXXPQRHHPHQALSCRLCDSTLRVLSIARAHRKRCR 360
            MC  +EW  PEA+     AKRRL+E+Q LQ +ASVC+GIEHLMNKRRR+T   GGAAR    P GQQ R        D+GD+    H XXXX    HP    SCRLC+STLRVLS A  H +RCR
Sbjct:    1 MCSGREWPTPEARPRRGDAKRRLQEVQDLQ-VASVCMGIEHLMNKRRRSTKRRGGAARV-FPPVGQQARLFRDKSSDDAGDSCGGDHQXXXXXD--HPS---SCRLCESTLRVLSTALLHVRRCR 118
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BLAST of mRNA_L-elsbetiae_contig20108.6047.1 vs. uniprot
Match: A0A6H5KLU7_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLU7_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.140e-21
Identity = 64/119 (53.78%), Postives = 71/119 (59.66%), Query Frame = 1 
Query:    7 CWQEW-IPEAKGVGIGAKRRLREIQQLQQIASVCLGIEHLMNKRRRATTGAGGAARARVSPQGQQTRPLCPDSGDATRPPHXXXXXPQRHHPHQALSCRLCDSTLRVLSIARAHRKRCR 360
            C  EW IPEA+     AKRRL+EIQ+LQ +ASVCLGIEHLMNKRR+   GA    R    P GQQ   L  +SGDA            R H H    CRLC+STLRVLS A  H KRCR
Sbjct:    2 CSGEWLIPEARVRRNDAKRRLQEIQELQ-VASVCLGIEHLMNKRRKCAKGAATRVRP-APPAGQQQARLSRESGDAR----DSCSSDGRDHQHP---CRLCESTLRVLSTALLHVKRCR 111
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20108.6047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KZ70_9PHAE1.480e-2353.23C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G0D1_ECTSI8.900e-2255.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLU7_9PHAE2.140e-2153.78C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20108contigL-elsbetiae_contig20108:1075..2615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size360
Cds size360
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815832.7762394-CDS-L-elsbetiae_contig20108:1074..11611622815832.7762394-CDS-L-elsbetiae_contig20108:1074..1161Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20108 1075..1161 +
1691683132.973895-CDS-L-elsbetiae_contig20108:1074..11611691683132.973895-CDS-L-elsbetiae_contig20108:1074..1161Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20108 1075..1161 +
1622815832.7867012-CDS-L-elsbetiae_contig20108:2342..26151622815832.7867012-CDS-L-elsbetiae_contig20108:2342..2615Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20108 2343..2615 +
1691683132.9852064-CDS-L-elsbetiae_contig20108:2342..26151691683132.9852064-CDS-L-elsbetiae_contig20108:2342..2615Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20108 2343..2615 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20108.6047.1prot_L-elsbetiae_contig20108.6047.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20108 1075..2615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20108.6047.1

>prot_L-elsbetiae_contig20108.6047.1 ID=prot_L-elsbetiae_contig20108.6047.1|Name=mRNA_L-elsbetiae_contig20108.6047.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
MCCWQEWIPEAKGVGIGAKRRLREIQQLQQIASVCLGIEHLMNKRRRATT
GAGGAARARVSPQGQQTRPLCPDSGDATRPPHHYHHHPQRHHPHQALSCR
LCDSTLRVLSIARAHRKRCR
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mRNA from alignment at L-elsbetiae_contig20108:1075..2615+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20108.6047.1 ID=mRNA_L-elsbetiae_contig20108.6047.1|Name=mRNA_L-elsbetiae_contig20108.6047.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1541bp|location=Sequence derived from alignment at L-elsbetiae_contig20108:1075..2615+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCTGCTGGCAAGAATGGATTCCCGAAGCTAAAGGAGTTGGAATCGG
AGCCAAGCGCAGGCTGCGAGAGATTCAACAGCTACAGGTTCGTCCTCACT
CTACAAGATAGGTCTAGTCTATGTACATAGGTGTCGATATCTCCTGTCTC
TCTCCCAATCGAGAACCCCGGCCTTATTTATTGACGGGTTCATCCGTCGG
TGCATACTCTGCTGGGTTGGCTTGGAGTACGTGTGGTGATTTTTGTATGT
ATTCAGAGCTACTGATGTATAATAATTGACGGGTGGGAGGGGGGCGAAGG
GGAAATGCATATCTTCCGTGTTTGGAGTGGGAATTGGGAAGTCTATCAAT
GCTGGAGCACTTGTCAACCCTAGGCGCTGCCTACGGTATGGAGTAGAGTA
GCACCAAGGCGTATGAGCCCCCCTGCATTGGTCGGGTTCACCTTTGGCCG
GCCTCTATTGTATCCAACTGGTTAAGCACGAACTCGCAAGAGGTAACATA
GTTGTTGCGAGACGATCACCAACCGAACGACCGACTGTTTCCCTTGGCCG
ACGCACCGCATAGAGCCAGTGCTGGCTTGCACCTGAAGAACCGCTCTACA
CATCTACATTCAGCAAAGCCAGCCGGTTGTCCCAACTCTATTCGCTAATA
TTTACATACATCAAGCCCCGAACCTTTTGCGGGGTGTAGCAGCTCCGCAT
CTCGAATGTTGTATGTTGGAGGTTATCTAGAACTTCTACGTAGCCATTAG
ATAGTCTTACCTGCAGCTGAATGTGTAGGGATGCATTAAATGGTACTCCT
ACCTACTTCGACGTCGGGTACAAGCTTCAACTTTGTTGGGGCTCACGCAA
CCGGTCAATGCTTGGCACTAGAGTTCTGTAAGCCCTGAATTGATAACGGC
GTGCTACACCCATTTCATGGCACCCTTGACATGCTCACCTTTTGTATACA
ACAGGGTTGTGGACTGCTGTGTGCGAAAAGCGAGTGTGTGTACGGCCTTC
ACAAGCGTTTGACATAGAGCAGCCTTGGTAAACGGTGGTGTTTTCATTCG
GACTTGTGTCACCTCCGGGAGAGCATGCACCGACCCCCCGCAATGAGGAA
TATTGTATAGGTACATCCGATCTACGCCAACATGCCTTGGCGCCACTAAA
AGGTACCATAGCAGCAGGTGGTTCTCTTACCTTTTTCTTGCGTGGAAACT
GCTGCGCCTCATCAATGTCCGTCTACGACCTCTCTTCTATTGTCGAATGT
CGCCGCCCTCCACCGCAGCAGATAGCCTCCGTGTGTCTGGGCATCGAGCA
CCTTATGAACAAGCGGCGCAGAGCGACAACGGGCGCAGGGGGGGCGGCAC
GAGCACGAGTATCACCGCAGGGGCAACAAACACGCCCCCTTTGTCCCGAC
AGCGGCGACGCTACTCGCCCCCCCCATCATTATCACCACCACCCCCAGCG
CCACCACCCCCACCAAGCTTTATCGTGCCGACTCTGCGACTCCACACTCC
GCGTTCTCAGCATCGCTCGCGCCCACCGCAAACGTTGCCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20108:1075..2615+

>mRNA_L-elsbetiae_contig20108.6047.1 ID=mRNA_L-elsbetiae_contig20108.6047.1|Name=mRNA_L-elsbetiae_contig20108.6047.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig20108:1075..2615+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCTGCTGGCAAGAATGGATTCCCGAAGCTAAAGGAGTTGGAATCGG
AGCCAAGCGCAGGCTGCGAGAGATTCAACAGCTACAGATGTGCTGCTGGC
AAGAATGGATTCCCGAAGCTAAAGGAGTTGGAATCGGAGCCAAGCGCAGG
CTGCGAGAGATTCAACAGCTACAGCAGATAGCCTCCGTGTGTCTGGGCAT
CGAGCACCTTATGAACAAGCGGCGCAGAGCGACAACGGGCGCAGGGGGGG
CGGCACGAGCACGAGTATCACCGCAGGGGCAACAAACACGCCCCCTTTGT
CCCGACAGCGGCGACGCTACTCGCCCCCCCCATCATTATCACCACCACCC
CCAGCGCCACCACCCCCACCAAGCTTTATCGTGCCGACTCTGCGACTCCA
CACTCCGCGTTCTCAGCATCGCTCGCGCCCACCGCAAACGTTGCCGCCAG
ATAGCCTCCGTGTGTCTGGGCATCGAGCACCTTATGAACAAGCGGCGCAG
AGCGACAACGGGCGCAGGGGGGGCGGCACGAGCACGAGTATCACCGCAGG
GGCAACAAACACGCCCCCTTTGTCCCGACAGCGGCGACGCTACTCGCCCC
CCCCATCATTATCACCACCACCCCCAGCGCCACCACCCCCACCAAGCTTT
ATCGTGCCGACTCTGCGACTCCACACTCCGCGTTCTCAGCATCGCTCGCG
CCCACCGCAAACGTTGCCGC
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