mRNA_L-elsbetiae_contig20104.6045.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20104.6045.1
Unique NamemRNA_L-elsbetiae_contig20104.6045.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig20104.6045.1 vs. uniprot
Match: D7FZB3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB3_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.480e-22
Identity = 46/60 (76.67%), Postives = 55/60 (91.67%), Query Frame = 1
Query:    1 KECPDVFFAGNQPQFATSLLEGASGQKQARMVCVPAFASTGQAALLDLQTLDCTPLRFSS 180
            +ECPD+FFAGNQPQFATS+LEGA G K  R+VCVPAFA+TGQAALL+L++L+CTPL FSS
Sbjct:  414 EECPDIFFAGNQPQFATSILEGADGHK-GRVVCVPAFAATGQAALLNLESLECTPLNFSS 472          
BLAST of mRNA_L-elsbetiae_contig20104.6045.1 vs. uniprot
Match: A0A835YHI6_9STRA (DNA polymerase alpha/epsilon subunit B-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHI6_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 5.540e-16
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 KECPDVFFAGNQPQFATSLLEGASGQK--------QARMVCVPAFASTGQAALLDLQTLDCTPLRF 174
            +ECP VFFAGNQP+FAT L+EG  GQ+        Q R+VCVP+FA+TG+  L+DL TL+ TPL+F
Sbjct:  474 EECPHVFFAGNQPRFATRLVEGHDGQQKGLLNRAAQVRVVCVPSFATTGEVVLIDLDTLEATPLQF 539          
BLAST of mRNA_L-elsbetiae_contig20104.6045.1 vs. uniprot
Match: A9VBR8_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VBR8_MONBE)

HSP 1 Score: 73.2 bits (178), Expect = 1.130e-13
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    4 ECPDVFFAGNQPQFATSLLEGASGQKQARMVCVPAFASTGQAALLDLQTLDCTPLRFSS 180
            +CP VFFAGNQP+FAT    G  GQK  R+VCVP F+ T  A LLDL TL+ TPL FS+
Sbjct:  404 DCPHVFFAGNQPEFATKECSGPDGQK-VRLVCVPDFSKTATAVLLDLHTLEATPLCFSN 461          
BLAST of mRNA_L-elsbetiae_contig20104.6045.1 vs. uniprot
Match: A0A7R9PML2_TIMGE (Hypothetical protein n=1 Tax=Timema genevievae TaxID=629358 RepID=A0A7R9PML2_TIMGE)

HSP 1 Score: 68.9 bits (167), Expect = 2.720e-13
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = 1
Query:    4 ECPDVFFAGNQPQFATSLLEGASGQKQARMVCVPAFASTGQAALLDLQTLDCTPLR 171
            ECPDV+FAGNQP+F T L EG  GQ+  R++C+P+F  T    ++DL TL+ TP R
Sbjct:   79 ECPDVYFAGNQPRFQTKLYEGPKGQR-VRLICIPSFIKTHSCVMVDLATLEVTPFR 133          
BLAST of mRNA_L-elsbetiae_contig20104.6045.1 vs. uniprot
Match: F2TYM9_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TYM9_SALR5)

HSP 1 Score: 72.0 bits (175), Expect = 2.780e-13
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 1
Query:    7 CPDVFFAGNQPQFATSLLEGASGQKQARMVCVPAFASTGQAALLDLQTLDCTPLRFSS 180
            CP V+FAGNQP FAT L+ G  GQ Q R+VCVP+F+ T  A LL+L TL+C P++F +
Sbjct:  399 CPHVYFAGNQPSFATKLVTGPEGQ-QVRLVCVPSFSDTHTAVLLNLATLECEPIQFDA 455          
BLAST of mRNA_L-elsbetiae_contig20104.6045.1 vs. uniprot
Match: A0A067QYD2_ZOONE (DNA polymerase delta subunit 2 n=1 Tax=Zootermopsis nevadensis TaxID=136037 RepID=A0A067QYD2_ZOONE)

HSP 1 Score: 71.2 bits (173), Expect = 5.240e-13
Identity = 30/59 (50.85%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    4 ECPDVFFAGNQPQFATSLLEGASGQKQARMVCVPAFASTGQAALLDLQTLDCTPLRFSS 180
            ECPD++FAGNQPQF + L EG  GQ Q R++C+PAF+ T    +++L+ LDC  +RF +
Sbjct:  403 ECPDIYFAGNQPQFQSKLYEGPEGQ-QVRLICIPAFSKTHSCVVVNLKNLDCYTVRFDA 460          
BLAST of mRNA_L-elsbetiae_contig20104.6045.1 vs. uniprot
Match: A0A6S7FSH6_PARCT (DNA polymerase delta subunit 2 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7FSH6_PARCT)

HSP 1 Score: 70.1 bits (170), Expect = 1.340e-12
Identity = 32/60 (53.33%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    1 KECPDVFFAGNQPQFATSLLEGASGQKQARMVCVPAFASTGQAALLDLQTLDCTPLRFSS 180
            KECP V+F GNQP+FA   +EG++GQK A ++ VP+F  +G   LL+L+TL+C P+ FSS
Sbjct:  403 KECPHVYFVGNQPEFAQDSIEGSAGQKVA-IIMVPSFTQSGCCVLLNLRTLECQPIMFSS 461          
BLAST of mRNA_L-elsbetiae_contig20104.6045.1 vs. uniprot
Match: A0A4P9WRA0_9FUNG (DNA polymerase alpha/epsilon subunit B-domain-containing protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WRA0_9FUNG)

HSP 1 Score: 69.3 bits (168), Expect = 2.490e-12
Identity = 33/56 (58.93%), Postives = 43/56 (76.79%), Query Frame = 1
Query:   10 PDVFFAGNQPQFATSLLEGASGQKQARMVCVPAFASTGQAALLDLQTLDCTPLRFS 177
            P V+F GNQP+F TSL+EG  G  Q R+V VP+F++TG  A++DL TLDCTP+ FS
Sbjct:  398 PHVYFIGNQPEFETSLVEGPDGS-QTRVVLVPSFSTTGAVAVVDLATLDCTPVVFS 452          
BLAST of mRNA_L-elsbetiae_contig20104.6045.1 vs. uniprot
Match: F9XER7_ZYMTI (Uncharacterized protein n=4 Tax=Zymoseptoria TaxID=1047167 RepID=F9XER7_ZYMTI)

HSP 1 Score: 69.3 bits (168), Expect = 2.520e-12
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    1 KECPDVFFAGNQPQFATSLLEGASGQKQARMVCVPAFASTGQAALLDLQTLDCTPLRF 174
            KECP V+F GNQP+F TS++EG  GQK  R+V VP F  TG+  LLD++TLD   ++F
Sbjct:  440 KECPHVYFVGNQPKFETSVIEGPHGQK-VRLVAVPKFKETGEIVLLDMETLDAEVVKF 496          
BLAST of mRNA_L-elsbetiae_contig20104.6045.1 vs. uniprot
Match: A0A7R9E6C0_9NEOP (Hypothetical protein n=1 Tax=Timema monikensis TaxID=170555 RepID=A0A7R9E6C0_9NEOP)

HSP 1 Score: 69.3 bits (168), Expect = 2.540e-12
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 1
Query:    4 ECPDVFFAGNQPQFATSLLEGASGQKQARMVCVPAFASTGQAALLDLQTLDCTPLR 171
            ECPDV+FAGNQP+F T L EG  GQ+  R+VC+P+F  T    ++DL TL+ TP R
Sbjct:  564 ECPDVYFAGNQPRFQTKLYEGPKGQR-VRLVCIPSFIKTHSCVMVDLATLEVTPFR 618          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20104.6045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZB3_ECTSI1.480e-2276.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YHI6_9STRA5.540e-1657.58DNA polymerase alpha/epsilon subunit B-domain-cont... [more]
A9VBR8_MONBE1.130e-1361.02Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A7R9PML2_TIMGE2.720e-1353.57Hypothetical protein n=1 Tax=Timema genevievae Tax... [more]
F2TYM9_SALR52.780e-1356.90Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A067QYD2_ZOONE5.240e-1350.85DNA polymerase delta subunit 2 n=1 Tax=Zootermopsi... [more]
A0A6S7FSH6_PARCT1.340e-1253.33DNA polymerase delta subunit 2 n=1 Tax=Paramuricea... [more]
A0A4P9WRA0_9FUNG2.490e-1258.93DNA polymerase alpha/epsilon subunit B-domain-cont... [more]
F9XER7_ZYMTI2.520e-1255.17Uncharacterized protein n=4 Tax=Zymoseptoria TaxID... [more]
A0A7R9E6C0_9NEOP2.540e-1255.36Hypothetical protein n=1 Tax=Timema monikensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20104contigL-elsbetiae_contig20104:71..915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.4
Seed ortholog evalue6.2e-19
Seed eggNOG ortholog2880.D7FZB3
Preferred namePOLD2
KEGG rclassRC02795
KEGG koko:K02321,ko:K02328
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03430,ko03440,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map03430,map03440,map05166
KEGG ModuleM00261,M00262
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000278,GO:0000723,GO:0000731,GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006273,GO:0006278,GO:0006279,GO:0006281,GO:0006283,GO:0006284,GO:0006289,GO:0006296,GO:0006297,GO:0006298,GO:0006301,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0016043,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019439,GO:0019725,GO:0019985,GO:0022402,GO:0022414,GO:0022616,GO:0030894,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0033567,GO:0033683,GO:0034061,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0034655,GO:0042575,GO:0042592,GO:0042769,GO:0043137,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043601,GO:0043625,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0046483,GO:0046700,GO:0050896,GO:0051276,GO:0051321,GO:0051606,GO:0051716,GO:0060249,GO:0061695,GO:0065007,GO:0065008,GO:0070013,GO:0070914,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0104004,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576,GO:1902296,GO:1902319,GO:1902494,GO:1902969,GO:1902983,GO:1903046,GO:1903047,GO:1903459,GO:1903460,GO:1904161,GO:1990234
EggNOG free text desc.DNA-directed DNA polymerase activity
EggNOG OGsCOG1311@1,KOG2732@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Exons2
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815832.7363582-CDS-L-elsbetiae_contig20104:70..1511622815832.7363582-CDS-L-elsbetiae_contig20104:70..151Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20104 71..151 +
1691683132.9491692-CDS-L-elsbetiae_contig20104:70..1511691683132.9491692-CDS-L-elsbetiae_contig20104:70..151Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20104 71..151 +
1622815832.7460005-CDS-L-elsbetiae_contig20104:816..9151622815832.7460005-CDS-L-elsbetiae_contig20104:816..915Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20104 817..915 +
1691683132.9638138-CDS-L-elsbetiae_contig20104:816..9151691683132.9638138-CDS-L-elsbetiae_contig20104:816..915Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20104 817..915 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20104.6045.1prot_L-elsbetiae_contig20104.6045.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20104 71..915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20104.6045.1

>prot_L-elsbetiae_contig20104.6045.1 ID=prot_L-elsbetiae_contig20104.6045.1|Name=mRNA_L-elsbetiae_contig20104.6045.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=60bp
KECPDVFFAGNQPQFATSLLEGASGQKQARMVCVPAFASTGQAALLDLQT
LDCTPLRFSS
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mRNA from alignment at L-elsbetiae_contig20104:71..915+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20104.6045.1 ID=mRNA_L-elsbetiae_contig20104.6045.1|Name=mRNA_L-elsbetiae_contig20104.6045.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=845bp|location=Sequence derived from alignment at L-elsbetiae_contig20104:71..915+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGAGTGCCCGGACGTCTTCTTCGCCGGTAACCAGCCGCAGTTCGCGAC GAGCCTGCTCGAGGGGGCCAGCGGCCAGAAGGTGACACACGACTTTTCGA TTTAATTTCATTCGGCTGTTGAAAAAACTACAGTAGTTGGGCATAAAGCG TGCTCTTGCCATGGGGGGCAGTGCATGCAGCGAAGACGGGAAAAAGCTAC CTATCTGGTATGTATGTATGCACGTACGTTGGTGGCGACTTTGCTTCTCC ACTCTCTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT TGTTGCTGCTGAGAGTGGAAAGTCTAGCAAGGATTGTATTGTTTTGTGAT TCGACGGAGGGCGGTAAGGCGACCCTGTGTGTGGTAATGGATGCGTGCCA TAACCTCGGCAGCGAGTGCCTGTTGGATGCTGCTGCTTATCCTTCGGCTG CTGCTCTTCTGCCGCTACCGCTACTCTCCCGCCGCCGCTGCCGCTGCTGC TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCTGCCGCTGT TGCTACTGTCTGTCCGTCATGGCGTGCTGGGGAGTGGAGTTTGTGTTCAT CTTCGAAAACAAGCCTTTCGCCCCCCCCCTTCCCCTTCTGTTGCCCCTTG TTCTTCCCCCGTTTCCACCTCGACCCTCTTCCACCCCAGCACCAAATTCA TGATCCTGAGTACCCCCCCGCCCCACTCGCTCCCCTCCGCACCAAGCAGG CGAGGATGGTGTGCGTGCCAGCGTTCGCCTCCACAGGGCAGGCGGCGCTG CTAGATCTCCAGACCCTGGACTGCACGCCGCTCAGGTTTTCCAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20104:71..915+

>mRNA_L-elsbetiae_contig20104.6045.1 ID=mRNA_L-elsbetiae_contig20104.6045.1|Name=mRNA_L-elsbetiae_contig20104.6045.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=360bp|location=Sequence derived from alignment at L-elsbetiae_contig20104:71..915+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGAGTGCCCGGACGTCTTCTTCGCCGGTAACCAGCCGCAGTTCGCGAC
GAGCCTGCTCGAGGGGGCCAGCGGCCAGAAGAAGGAGTGCCCGGACGTCT
TCTTCGCCGGTAACCAGCCGCAGTTCGCGACGAGCCTGCTCGAGGGGGCC
AGCGGCCAGAAGCAGGCGAGGATGGTGTGCGTGCCAGCGTTCGCCTCCAC
AGGGCAGGCGGCGCTGCTAGATCTCCAGACCCTGGACTGCACGCCGCTCA
GGTTTTCCAGCCAGGCGAGGATGGTGTGCGTGCCAGCGTTCGCCTCCACA
GGGCAGGCGGCGCTGCTAGATCTCCAGACCCTGGACTGCACGCCGCTCAG
GTTTTCCAGC
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