mRNA_L-elsbetiae_contig2010.6040.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig2010.6040.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE) HSP 1 Score: 199 bits (507), Expect = 6.100e-54 Identity = 141/274 (51.46%), Postives = 160/274 (58.39%), Query Frame = 1 Query: 553 PRPSFTGVFPLDAAAQRGDLNVVQELIEQRGIKGCAGPSGGLNALHMAAERNNQRVETMAMLTGAGVVDTGPALSAAAAAVGGEAAVKFLLQQRQLAGSPAGVVGYVNCRDHLGMTPLFCSIDFRGNALGVPRLVSPRIVRLLVEAGADTTSGFRFPNAAGGVTTFRTPLAYTNELLRKKRVREIG---LTEEQLHGLEAIRRLLMRVEAVHAVSWLWQGDFSSIAHAAGGANGTTRTTPASSPQLTLMLPILRRRRRGAL--LAPLLRYSSCP 1359 P PS PLDAAA+ G VV ELI Q GI GC G SGG+ AL AA+ N + M +LT AGVVDTG AL AA GGE +KFLL+Q + A YVN RD G+TPL I PR+VRLLVEAGADTTS N GG TPL T +R K V+ +G + EQLH LEAIRRLL+RVEAVHAVSWLW D S+I AA A GT RTT A S +TL + + RRR RG LA LLRYSS P Sbjct: 180 PDPSGRTFLPLDAAAENGHPEVVNELIRQVGIDGCGGSSGGVRALQQAAQFKNLNI--MVILTNAGVVDTGLAL-VVAAGYGGETPLKFLLEQAR-ARKTMDEAAYVNTRDRGGVTPLLWGIQH----------YRPRVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDK-VKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAA--ARGTDRTT-AISTAVTLPMLVTRRRARGRKVPLAALLRYSSKP 435
BLAST of mRNA_L-elsbetiae_contig2010.6040.1 vs. uniprot
Match: D7FVK3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI) HSP 1 Score: 187 bits (476), Expect = 1.900e-49 Identity = 124/261 (47.51%), Postives = 160/261 (61.30%), Query Frame = 1 Query: 580 PLDAAAQRGDLNVVQELIEQRGIKGCAGPSGGLNALHMAAERNNQRVETMAMLTGAGVVDTGPALSAAAAAVGGEAAVKFLLQQRQLAGSPAGVVGYVNC-RDHLGMTPLFCSIDFRGNALGVPRLVSPRIVRLLVEAGADTTSGFRFPNAAGGVTTFRTPLAYTNELLRKKRVREIGLTEEQLHGLEAIRRLLMRVEAVHAVSWLWQGDFSSIAHAAGGANGT-TRTTPASSPQLTLMLPILRRRRRGA--LLAPLLRYS 1350 PLD AAQ G L VV EL+++ GI+GC G +GG+ AL +AA + + ++ M LT AGVVDTG AL A + G VKFLLQQ+ G+P+ YV+ RD G TPL C+ID +G+ + SP++VRLLV+AGADTTS RF G + TPL+ E LR K + +E L LE IRRLL+RVEAVHA SWLWQ + AGG T T ++ ++PQL +LPILRRR RG + A L RY+ Sbjct: 186 PLDTAAQNGRLGVVLELLQRFGIRGCGGGTGGVTALQLAAMKPH--MDVMLALTTAGVVDTGIAL-VKATSFGHMDVVKFLLQQQN--GTPSEKSAYVSRPRDPCGRTPLICNID-----VGLNQSCSPKVVRLLVDAGADTTSIVRFTIQPGTLPVVCTPLSLATEALRIKIAYRKAIPDELLRRLELIRRLLLRVEAVHATSWLWQNGVPRVGLPAGGTAATETESSSTTAPQLRTVLPILRRRARGRGFVSASLCRYA 436
BLAST of mRNA_L-elsbetiae_contig2010.6040.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI) HSP 1 Score: 185 bits (469), Expect = 1.010e-47 Identity = 136/270 (50.37%), Postives = 162/270 (60.00%), Query Frame = 1 Query: 559 PSFTGVFPLDAAAQRGDLNVVQELIEQRGIKGCAGPSGGLNALHMAAERNNQRVETMAMLTGAGVVDTGPALSAAAAAVGGEAAVKFLLQQRQLAGSPAGVVG-YVNCRDHLGMTPLF-CSIDFRGNALGVPRLVSPRIVRLLVEAGADTTSGFRFPNAAGGVTTFRTPLAYTNELLRKKRVRE-IGLTEEQLHGLEAIRRLLMRVEAVHAVSWLWQGDFSSIAHAAGGANGTTRTTPASS-PQLTLMLPILRRR--RRGALLAPLLRYS 1350 P T PLD AA+ G +VV+ELI++ GI+GC S G +AL AA +NQ ++ MA+LT AGVVDTG AL AA +G EA+VKFLL+ R G GV G Y+N RD G TPL C+ A PRIVR+LV+AGADTTS + N GGV TPLA+T LRKK V + T+E L LEAI RLL+RV+AVHAVSWLW I A T T P P L LMLPIL+RR RR L+A LLRYS Sbjct: 274 PGNTTTVPLDLAAKHGHTDVVRELIQELGIEGCDATSAGAHALAFAA--SNQHLDIMAILTEAGVVDTGKALYLAAG-MGHEASVKFLLRHRHKEGG-CGVEGAYLNARDVNGYTPLVVCTQGCFSQA--------PRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAPFIGRA-------TETDPEPPLPALKLMLPILKRRTKRRCGLVATLLRYS 524
BLAST of mRNA_L-elsbetiae_contig2010.6040.1 vs. uniprot
Match: D7G1H7_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1H7_ECTSI) HSP 1 Score: 180 bits (456), Expect = 1.090e-46 Identity = 132/277 (47.65%), Postives = 162/277 (58.48%), Query Frame = 1 Query: 559 PSFTGVFPLDAAAQRGDLNVVQELIEQRGIKGCAGPSGGLNALHMAAERNNQRVETMAMLTGAG-VVDTGPALSAAAAAVGGEAAVKFLLQQRQLAGSPAGVVGYVN-CRDHLGMTPLFCSIDFRGNALGVPRLVSPRIVRLLVEAGADTTSGFRFPNAAGGVT--------TFRTPLAYTNELLRKKRVREIGLTEEQLHGLEAIRRLLMRVEAVHAVSWLW-QGDFSSIAHAAGGANGTTRTTPASSPQLTLMLPILRRR--RRGALLAPLLRYS 1350 P PL+ AA G+ +V +E+I Q GI+GC GPSGG+ AL AA+ + +E MA+L AG VVDTGPAL AA G AVKFLL++RQ A YVN RD G TP+ C++D +G RL SP+IVRLLV+AGA+TT A GVT T TPLA+T LLR+ RV T+EQL L+ R LL R EAVHAVSWLW G+ IA AAG T +T ++P L M P+LRR+ RG LL L RYS Sbjct: 178 PMGVSYVPLEMAALHGNPDVAREMIRQVGIRGCGGPSGGVEALRQAADE--EHLEFMAVLLDAGGVVDTGPALILAAEN-GRAVAVKFLLRRRQ-----ADADAYVNGTRDPYGRTPVMCAVD-----VGAGRLCSPKIVRLLVDAGANTTR-------AVGVTRITPRWEKTSETPLAFTTRLLREGRVDGEAATKEQLQRLKDTRCLLSRAEAVHAVSWLWASGEPPRIAQAAGDTKTETASTAVATP-LRAMSPMLRRKPGTRGVLLKTLFRYS 433
BLAST of mRNA_L-elsbetiae_contig2010.6040.1 vs. uniprot
Match: D8LJF9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF9_ECTSI) HSP 1 Score: 177 bits (449), Expect = 8.090e-46 Identity = 125/274 (45.62%), Postives = 160/274 (58.39%), Query Frame = 1 Query: 547 RRPRPSFTGVFPLDAAAQRGDLNVVQELIEQRGIKGCAGPSGGLNALHMAAERNNQRVETMAMLTGAGVVDTGPALSAAAAAVGGEAAVKFLLQQRQLAGSPAGVVGYVNCRDHLGMTPLFCSIDFRGNALGVPRLVS-PRIVRLLVEAGADTTSGFRFPNAAGGVTTFRTPLAYTNELLRKKRVREIGLTEEQLHGLEAIRRLLMRVEAVHAVSWLWQGDFSSIAHAAGGANGTTRTTPASSPQLTLMLPILRRRRR--GALLAPLLRYSSCP 1359 R P P+ PLD+AA+ G+L V++ELI++ GI+GC G S G AL MA E +RV MA+LT AGVVDTG AL+ +A +G EA+VK+LLQ P YVN RD G TPL SI GV S PR+ RLLVEAGADTT+ R N+ G V TPL T +L+ K+V +++++L LE IRRLL++VEAVHA SWLW A T T A++P+L +LPILRRR R G + L R+ P Sbjct: 164 RAPLPTL---LPLDSAARNGNLLVMRELIQRVGIEGCGGQSRGEVALLMAGE--GRRVAAMALLTHAGVVDTGQALTISAG-LGREASVKYLLQNHAKHYGPGA---YVNVRDRNGTTPLLSSIY----VCGVDEQSSFPRVARLLVEAGADTTTELRRTNSMGVVLFSCTPLKLTVHILQDKKVDGTYISKQRLWRLEGIRRLLLQVEAVHAESWLWPSSSGDGGRRPDNAAEVTTATNAAAPKLGRVLPILRRRARRPGVVWTALCRHQRKP 424
BLAST of mRNA_L-elsbetiae_contig2010.6040.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE) HSP 1 Score: 172 bits (435), Expect = 1.340e-43 Identity = 128/259 (49.42%), Postives = 155/259 (59.85%), Query Frame = 1 Query: 580 PLDAAAQRGDLNVVQELIEQRGIKGCAGPSGGLNALHMAAERNNQRVETMAMLTGAGVVDTGPALSAAAAAVGGEAAVKFLLQQRQLAGSPAGVVGYVNCRDHLGMTPLFCSIDFRGNALGVPRLVSPRIVRLLVEAGADTTSGFRFPNAAGGVTTFRTPLAYTNELLRKKRVREIGLTEEQLHGLEAIRRLLMRVEAVHAVSWLWQGDFSSIAHA-AGGANGTTRTTPASSPQLTLMLPILRRRRRGALLAPLLRYSS 1353 PLD AAQ G VV ELI Q GI GC G SGG NAL AA + R++ MA+LT AGVVDTG AL AA GGEA +KFLL+Q + S Y+N + +G+T L +D G+ R PR+V+LLVEAGADTTS N G TPL T LL + + LT E+ + LE IRRLL+R EAVHAVSWLW D +I HA A G TT T+ A++P + LM+ R R+G LLA LLRYSS Sbjct: 189 PLDVAAQNGHREVVNELIRQVGIDGCGGSSGGENALRQAALFS--RLDIMAILTDAGVVDTGLAL-VVAAGYGGEAPLKFLLEQARGRKS-TDRAAYMNTLNGVGLTSL---LD------GIQRC-RPRVVQLLVEAGADTTSPVLICNQPGEDDFHITPLGLTMCLLGGRSAKP--LTMEEQNKLEVIRRLLLREEAVHAVSWLWPSDTPTITHATAKGTGRTTATSTAATPFIMLMIGRRTRGRKG-LLAALLRYSS 430
BLAST of mRNA_L-elsbetiae_contig2010.6040.1 vs. uniprot
Match: D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI) HSP 1 Score: 161 bits (407), Expect = 6.400e-42 Identity = 108/216 (50.00%), Postives = 131/216 (60.65%), Query Frame = 1 Query: 709 NQRVETMAMLTGAGVVDTGPALSAAAAAVGGEAAVKFLLQQRQLAGSPAGVVGYVNCRDHLGMTPLFCSIDFRGNALGVPRLVSPRIVRLLVEAGADTTSGFRFPNAAGGVTTFRTPLAYTNELLRKKRVREIGLTEEQLHGLEAIRRLLMRVEAVHAVSWLWQGDFSSIAHAAGGANGTTRTTPASSPQLTLMLPILRRRRRGA--LLAPLLRYS 1350 NQ ++ MA+LTGAGV D + A +G EA+V+FLL+QR+ S V Y N D GMTPL CSI++ + +PRIVRLLV+AGADTTS R N GGV TPLA T LLR+K V TEEQLH L+AIRRLL+RV+AVHAVSWLW D SI HA + G P L+L LPIL+RR + +A LLR S Sbjct: 2 NQHMDIMAILTGAGVRDAMGYVLLGTAGLGREASVQFLLRQRRKE-SEMSVHAYANSSDGSGMTPLSCSIEWCSSG-------NPRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTSLLREKVVDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAVERSCGPE----PRRPPLSLTLPILKRRAKTCHVFVATLLRSS 205
BLAST of mRNA_L-elsbetiae_contig2010.6040.1 vs. uniprot
Match: D7FVU3_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU3_ECTSI) HSP 1 Score: 157 bits (396), Expect = 1.370e-38 Identity = 116/260 (44.62%), Postives = 145/260 (55.77%), Query Frame = 1 Query: 580 PLDAAAQRGDLNVVQELIEQRGIKGCAGPSGGLNALHMAAERNNQRVETMAMLTGAGVVDTGPALSAAAAAVGGEAAVKFLLQQRQLAGSPAGVVGYVN-CRDHLGMTPLFCSIDFRGNALGVPRLVSPRIVRLLVEAGADTTSGFRFPNAAGGVTTFRTPLAYTNELLRKKRVREIGLTEEQLHGLEAIRRLLMRVEAVHAVSWLWQGDFSSIAHAAGGANGTTRTTPASSPQLTLMLPILRRR--RRGALLAPLLRYS 1350 PL+ AAQ G VV EL+ + GI+ C GPSGGL+AL +AA +V+ M+ML AGVVD AA G EAAV FLL+Q++ YVN RD G+T L S FRGN + +PRI R LV+AGADTTS + TPL Y N+ ++ + T+EQL LEA RR+L+RV AVHAVSW+W D +A A + RT S QLT +LP+LRRR RR L L RYS Sbjct: 159 PLEVAAQTGRSAVVSELLREFGIRCCGGPSGGLDALRVAAVYG--QVDIMSMLMDAGVVDPVGLALLAAVGSGKEAAVGFLLRQQE----ERWQTSYVNIARDDDGLTALLWS--FRGNK---NKPCNPRITRRLVDAGADTTSAVQLRAKRSRTCVNVTPLEYVNDWALRETNGDHPATDEQLLRLEATRRVLLRVVAVHAVSWIWPSDAPLLARPAN----SPRTAKHSPTQLTTVLPVLRRRAGRRALLWDTLFRYS 403
BLAST of mRNA_L-elsbetiae_contig2010.6040.1 vs. uniprot
Match: D7G1U9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U9_ECTSI) HSP 1 Score: 154 bits (388), Expect = 3.290e-37 Identity = 106/252 (42.06%), Postives = 139/252 (55.16%), Query Frame = 1 Query: 598 QRGDLNVVQELIEQRGIKGCAGPSGGLNALHMAAERNNQRVETMAMLTGAGVVDTGPALSAAAAAVGGEAAVKFLLQQRQLAGSPAGVVGYVN-CRDHLGMTPLFCSIDFRGNALGVPRLVSPRIVRLLVEAGADTTSGFRFPNAAGGVTTFRTPLAYTNELLRKKRVREIGLTEEQLHGLEAIRRLLMRVEAVHAVSWLWQGDFSSIAHAAGGANGTTRTTPASSPQLTLMLPILRRR--RRGALLAPLLR 1344 Q G VV+ELI+Q G++GC G S G+ +L +AA Q V+ M +LT GVVDTG AL AA E +VKFLLQ + G YVN D G TPL C+I+ G++ SPRI R L++ GADT S + T+ TPL + LR+ +V TEEQL L+AI RLL ++EAVHAVSWLW+ + I HA G A+ + T A P L M +LR +RG +L + R Sbjct: 189 QHGHSEVVRELIQQLGVRGCGGVSAGVESLRLAA--TEQYVDIMGILTVGGVVDTGRAL-VVAAEYSREESVKFLLQHQA-----GGGTWYVNNTLDPFGRTPLVCTIEACGSS-------SPRIARFLIDDGADTKSTVLVTRSGEWTTSRDTPLGFATRSLRQNKVGGKNATEEQLRSLKAIHRLLSQIEAVHAVSWLWRSSDTPIGHAVGAASSRMKPTTAG-PTLKRMSTVLRTTVGKRGVVLRAVYR 424
BLAST of mRNA_L-elsbetiae_contig2010.6040.1 vs. uniprot
Match: D8LL76_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL76_ECTSI) HSP 1 Score: 147 bits (372), Expect = 4.120e-35 Identity = 118/289 (40.83%), Postives = 152/289 (52.60%), Query Frame = 1 Query: 493 TWISSGSSFVRKRTRY*ARRPRPSFTGVFPLDAAAQRGDLNVVQELIEQRGIKGCAGPSGGLNALHMAAERNNQRVETMAMLTGAGVVDTGPALSAAAAAVGGEAAVKFLLQQRQLAGSPAGVVGYVNC-RDHLGMTPLFCSIDFRGNALGVPRLVSPRIVRLLVEAGADTTSGFRFPNAAGGVTTFRTPLAYTNELLRKKRVREIGLTEEQLHGLEAIRRLLMRVEAVHAVSWLWQGDFSSIAHAAGGANGTTRTTPASSPQLTLMLPILRRR--RRGALLAPLLRYS 1350 T +SSG++FV PLD AA G L V +EL+++ GI+GCAG S G++AL AA +Q ++ MA+L AGVVDTG AL A +G E A+KFLL+Q+ G Y + RD G TPL ++ SPR+VRLLV+AGAD T R P+ G T + TPL L +K V E T +QL L A RRLL++VE VHA SWLW G A A G T +T + L LPI+ RR RRGA L + R + Sbjct: 174 TRMSSGNTFV-------------------PLDGAALNGHLAVARELVQRFGIRGCAGASAGVDALGQAAV--DQHLDVMALLCDAGVVDTGNAL-VATVFLGRERALKFLLEQK---GEGTARTTYASTPRDGRGHTPLLSAVTTGP--------CSPRVVRLLVDAGADATLAVRVPDGFGRSTKY-TPLDCATRCLAEKVVDEDFATAQQLRNLRASRRLLLQVEVVHATSWLWGGHAGCPA-APGKKRAQTEST--NGKPLKSRLPIMWRRSARRGAALPGVFRLA 425 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2010.6040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig2010.6040.1 >prot_L-elsbetiae_contig2010.6040.1 ID=prot_L-elsbetiae_contig2010.6040.1|Name=mRNA_L-elsbetiae_contig2010.6040.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=224bp MAAERNNQRVETMAMLTGAGVVDTGPALSAAAAAVGGEAAVKFLLQQRQLback to top mRNA from alignment at L-elsbetiae_contig2010:5178..7807+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig2010.6040.1 ID=mRNA_L-elsbetiae_contig2010.6040.1|Name=mRNA_L-elsbetiae_contig2010.6040.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2630bp|location=Sequence derived from alignment at L-elsbetiae_contig2010:5178..7807+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig2010:5178..7807+ >mRNA_L-elsbetiae_contig2010.6040.1 ID=mRNA_L-elsbetiae_contig2010.6040.1|Name=mRNA_L-elsbetiae_contig2010.6040.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1344bp|location=Sequence derived from alignment at L-elsbetiae_contig2010:5178..7807+ (Laminarionema elsbetiae ELsaHSoW15)back to top |