mRNA_L-elsbetiae_contig2010.6040.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2010.6040.1
Unique NamemRNA_L-elsbetiae_contig2010.6040.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig2010.6040.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 6.100e-54
Identity = 141/274 (51.46%), Postives = 160/274 (58.39%), Query Frame = 1
Query:  553 PRPSFTGVFPLDAAAQRGDLNVVQELIEQRGIKGCAGPSGGLNALHMAAERNNQRVETMAMLTGAGVVDTGPALSAAAAAVGGEAAVKFLLQQRQLAGSPAGVVGYVNCRDHLGMTPLFCSIDFRGNALGVPRLVSPRIVRLLVEAGADTTSGFRFPNAAGGVTTFRTPLAYTNELLRKKRVREIG---LTEEQLHGLEAIRRLLMRVEAVHAVSWLWQGDFSSIAHAAGGANGTTRTTPASSPQLTLMLPILRRRRRGAL--LAPLLRYSSCP 1359
            P PS     PLDAAA+ G   VV ELI Q GI GC G SGG+ AL  AA+  N  +  M +LT AGVVDTG AL   AA  GGE  +KFLL+Q + A        YVN RD  G+TPL   I              PR+VRLLVEAGADTTS     N  GG     TPL  T   +R K V+ +G    + EQLH LEAIRRLL+RVEAVHAVSWLW  D S+I  AA  A GT RTT A S  +TL + + RRR RG    LA LLRYSS P
Sbjct:  180 PDPSGRTFLPLDAAAENGHPEVVNELIRQVGIDGCGGSSGGVRALQQAAQFKNLNI--MVILTNAGVVDTGLAL-VVAAGYGGETPLKFLLEQAR-ARKTMDEAAYVNTRDRGGVTPLLWGIQH----------YRPRVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDK-VKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAA--ARGTDRTT-AISTAVTLPMLVTRRRARGRKVPLAALLRYSSKP 435          
BLAST of mRNA_L-elsbetiae_contig2010.6040.1 vs. uniprot
Match: D7FVK3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 1.900e-49
Identity = 124/261 (47.51%), Postives = 160/261 (61.30%), Query Frame = 1
Query:  580 PLDAAAQRGDLNVVQELIEQRGIKGCAGPSGGLNALHMAAERNNQRVETMAMLTGAGVVDTGPALSAAAAAVGGEAAVKFLLQQRQLAGSPAGVVGYVNC-RDHLGMTPLFCSIDFRGNALGVPRLVSPRIVRLLVEAGADTTSGFRFPNAAGGVTTFRTPLAYTNELLRKKRVREIGLTEEQLHGLEAIRRLLMRVEAVHAVSWLWQGDFSSIAHAAGGANGT-TRTTPASSPQLTLMLPILRRRRRGA--LLAPLLRYS 1350
            PLD AAQ G L VV EL+++ GI+GC G +GG+ AL +AA + +  ++ M  LT AGVVDTG AL   A + G    VKFLLQQ+   G+P+    YV+  RD  G TPL C+ID     +G+ +  SP++VRLLV+AGADTTS  RF    G +    TPL+   E LR K      + +E L  LE IRRLL+RVEAVHA SWLWQ     +   AGG   T T ++  ++PQL  +LPILRRR RG   + A L RY+
Sbjct:  186 PLDTAAQNGRLGVVLELLQRFGIRGCGGGTGGVTALQLAAMKPH--MDVMLALTTAGVVDTGIAL-VKATSFGHMDVVKFLLQQQN--GTPSEKSAYVSRPRDPCGRTPLICNID-----VGLNQSCSPKVVRLLVDAGADTTSIVRFTIQPGTLPVVCTPLSLATEALRIKIAYRKAIPDELLRRLELIRRLLLRVEAVHATSWLWQNGVPRVGLPAGGTAATETESSSTTAPQLRTVLPILRRRARGRGFVSASLCRYA 436          
BLAST of mRNA_L-elsbetiae_contig2010.6040.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 1.010e-47
Identity = 136/270 (50.37%), Postives = 162/270 (60.00%), Query Frame = 1
Query:  559 PSFTGVFPLDAAAQRGDLNVVQELIEQRGIKGCAGPSGGLNALHMAAERNNQRVETMAMLTGAGVVDTGPALSAAAAAVGGEAAVKFLLQQRQLAGSPAGVVG-YVNCRDHLGMTPLF-CSIDFRGNALGVPRLVSPRIVRLLVEAGADTTSGFRFPNAAGGVTTFRTPLAYTNELLRKKRVRE-IGLTEEQLHGLEAIRRLLMRVEAVHAVSWLWQGDFSSIAHAAGGANGTTRTTPASS-PQLTLMLPILRRR--RRGALLAPLLRYS 1350
            P  T   PLD AA+ G  +VV+ELI++ GI+GC   S G +AL  AA  +NQ ++ MA+LT AGVVDTG AL  AA  +G EA+VKFLL+ R   G   GV G Y+N RD  G TPL  C+      A        PRIVR+LV+AGADTTS  +  N  GGV    TPLA+T   LRKK V +    T+E L  LEAI RLL+RV+AVHAVSWLW      I  A       T T P    P L LMLPIL+RR  RR  L+A LLRYS
Sbjct:  274 PGNTTTVPLDLAAKHGHTDVVRELIQELGIEGCDATSAGAHALAFAA--SNQHLDIMAILTEAGVVDTGKALYLAAG-MGHEASVKFLLRHRHKEGG-CGVEGAYLNARDVNGYTPLVVCTQGCFSQA--------PRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAPFIGRA-------TETDPEPPLPALKLMLPILKRRTKRRCGLVATLLRYS 524          
BLAST of mRNA_L-elsbetiae_contig2010.6040.1 vs. uniprot
Match: D7G1H7_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1H7_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 1.090e-46
Identity = 132/277 (47.65%), Postives = 162/277 (58.48%), Query Frame = 1
Query:  559 PSFTGVFPLDAAAQRGDLNVVQELIEQRGIKGCAGPSGGLNALHMAAERNNQRVETMAMLTGAG-VVDTGPALSAAAAAVGGEAAVKFLLQQRQLAGSPAGVVGYVN-CRDHLGMTPLFCSIDFRGNALGVPRLVSPRIVRLLVEAGADTTSGFRFPNAAGGVT--------TFRTPLAYTNELLRKKRVREIGLTEEQLHGLEAIRRLLMRVEAVHAVSWLW-QGDFSSIAHAAGGANGTTRTTPASSPQLTLMLPILRRR--RRGALLAPLLRYS 1350
            P      PL+ AA  G+ +V +E+I Q GI+GC GPSGG+ AL  AA+   + +E MA+L  AG VVDTGPAL  AA   G   AVKFLL++RQ     A    YVN  RD  G TP+ C++D     +G  RL SP+IVRLLV+AGA+TT        A GVT        T  TPLA+T  LLR+ RV     T+EQL  L+  R LL R EAVHAVSWLW  G+   IA AAG     T +T  ++P L  M P+LRR+   RG LL  L RYS
Sbjct:  178 PMGVSYVPLEMAALHGNPDVAREMIRQVGIRGCGGPSGGVEALRQAADE--EHLEFMAVLLDAGGVVDTGPALILAAEN-GRAVAVKFLLRRRQ-----ADADAYVNGTRDPYGRTPVMCAVD-----VGAGRLCSPKIVRLLVDAGANTTR-------AVGVTRITPRWEKTSETPLAFTTRLLREGRVDGEAATKEQLQRLKDTRCLLSRAEAVHAVSWLWASGEPPRIAQAAGDTKTETASTAVATP-LRAMSPMLRRKPGTRGVLLKTLFRYS 433          
BLAST of mRNA_L-elsbetiae_contig2010.6040.1 vs. uniprot
Match: D8LJF9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF9_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 8.090e-46
Identity = 125/274 (45.62%), Postives = 160/274 (58.39%), Query Frame = 1
Query:  547 RRPRPSFTGVFPLDAAAQRGDLNVVQELIEQRGIKGCAGPSGGLNALHMAAERNNQRVETMAMLTGAGVVDTGPALSAAAAAVGGEAAVKFLLQQRQLAGSPAGVVGYVNCRDHLGMTPLFCSIDFRGNALGVPRLVS-PRIVRLLVEAGADTTSGFRFPNAAGGVTTFRTPLAYTNELLRKKRVREIGLTEEQLHGLEAIRRLLMRVEAVHAVSWLWQGDFSSIAHAAGGANGTTRTTPASSPQLTLMLPILRRRRR--GALLAPLLRYSSCP 1359
            R P P+     PLD+AA+ G+L V++ELI++ GI+GC G S G  AL MA E   +RV  MA+LT AGVVDTG AL+ +A  +G EA+VK+LLQ       P     YVN RD  G TPL  SI       GV    S PR+ RLLVEAGADTT+  R  N+ G V    TPL  T  +L+ K+V    +++++L  LE IRRLL++VEAVHA SWLW             A   T  T A++P+L  +LPILRRR R  G +   L R+   P
Sbjct:  164 RAPLPTL---LPLDSAARNGNLLVMRELIQRVGIEGCGGQSRGEVALLMAGE--GRRVAAMALLTHAGVVDTGQALTISAG-LGREASVKYLLQNHAKHYGPGA---YVNVRDRNGTTPLLSSIY----VCGVDEQSSFPRVARLLVEAGADTTTELRRTNSMGVVLFSCTPLKLTVHILQDKKVDGTYISKQRLWRLEGIRRLLLQVEAVHAESWLWPSSSGDGGRRPDNAAEVTTATNAAAPKLGRVLPILRRRARRPGVVWTALCRHQRKP 424          
BLAST of mRNA_L-elsbetiae_contig2010.6040.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 1.340e-43
Identity = 128/259 (49.42%), Postives = 155/259 (59.85%), Query Frame = 1
Query:  580 PLDAAAQRGDLNVVQELIEQRGIKGCAGPSGGLNALHMAAERNNQRVETMAMLTGAGVVDTGPALSAAAAAVGGEAAVKFLLQQRQLAGSPAGVVGYVNCRDHLGMTPLFCSIDFRGNALGVPRLVSPRIVRLLVEAGADTTSGFRFPNAAGGVTTFRTPLAYTNELLRKKRVREIGLTEEQLHGLEAIRRLLMRVEAVHAVSWLWQGDFSSIAHA-AGGANGTTRTTPASSPQLTLMLPILRRRRRGALLAPLLRYSS 1353
            PLD AAQ G   VV ELI Q GI GC G SGG NAL  AA  +  R++ MA+LT AGVVDTG AL   AA  GGEA +KFLL+Q +   S      Y+N  + +G+T L   +D      G+ R   PR+V+LLVEAGADTTS     N  G      TPL  T  LL  +  +   LT E+ + LE IRRLL+R EAVHAVSWLW  D  +I HA A G   TT T+ A++P + LM+    R R+G LLA LLRYSS
Sbjct:  189 PLDVAAQNGHREVVNELIRQVGIDGCGGSSGGENALRQAALFS--RLDIMAILTDAGVVDTGLAL-VVAAGYGGEAPLKFLLEQARGRKS-TDRAAYMNTLNGVGLTSL---LD------GIQRC-RPRVVQLLVEAGADTTSPVLICNQPGEDDFHITPLGLTMCLLGGRSAKP--LTMEEQNKLEVIRRLLLREEAVHAVSWLWPSDTPTITHATAKGTGRTTATSTAATPFIMLMIGRRTRGRKG-LLAALLRYSS 430          
BLAST of mRNA_L-elsbetiae_contig2010.6040.1 vs. uniprot
Match: D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 6.400e-42
Identity = 108/216 (50.00%), Postives = 131/216 (60.65%), Query Frame = 1
Query:  709 NQRVETMAMLTGAGVVDTGPALSAAAAAVGGEAAVKFLLQQRQLAGSPAGVVGYVNCRDHLGMTPLFCSIDFRGNALGVPRLVSPRIVRLLVEAGADTTSGFRFPNAAGGVTTFRTPLAYTNELLRKKRVREIGLTEEQLHGLEAIRRLLMRVEAVHAVSWLWQGDFSSIAHAAGGANGTTRTTPASSPQLTLMLPILRRRRRGA--LLAPLLRYS 1350
            NQ ++ MA+LTGAGV D    +    A +G EA+V+FLL+QR+   S   V  Y N  D  GMTPL CSI++  +        +PRIVRLLV+AGADTTS  R  N  GGV    TPLA T  LLR+K V     TEEQLH L+AIRRLL+RV+AVHAVSWLW  D  SI HA   + G         P L+L LPIL+RR +     +A LLR S
Sbjct:    2 NQHMDIMAILTGAGVRDAMGYVLLGTAGLGREASVQFLLRQRRKE-SEMSVHAYANSSDGSGMTPLSCSIEWCSSG-------NPRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTSLLREKVVDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAVERSCGPE----PRRPPLSLTLPILKRRAKTCHVFVATLLRSS 205          
BLAST of mRNA_L-elsbetiae_contig2010.6040.1 vs. uniprot
Match: D7FVU3_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU3_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 1.370e-38
Identity = 116/260 (44.62%), Postives = 145/260 (55.77%), Query Frame = 1
Query:  580 PLDAAAQRGDLNVVQELIEQRGIKGCAGPSGGLNALHMAAERNNQRVETMAMLTGAGVVDTGPALSAAAAAVGGEAAVKFLLQQRQLAGSPAGVVGYVN-CRDHLGMTPLFCSIDFRGNALGVPRLVSPRIVRLLVEAGADTTSGFRFPNAAGGVTTFRTPLAYTNELLRKKRVREIGLTEEQLHGLEAIRRLLMRVEAVHAVSWLWQGDFSSIAHAAGGANGTTRTTPASSPQLTLMLPILRRR--RRGALLAPLLRYS 1350
            PL+ AAQ G   VV EL+ + GI+ C GPSGGL+AL +AA     +V+ M+ML  AGVVD       AA   G EAAV FLL+Q++          YVN  RD  G+T L  S  FRGN     +  +PRI R LV+AGADTTS  +            TPL Y N+   ++   +   T+EQL  LEA RR+L+RV AVHAVSW+W  D   +A  A     + RT   S  QLT +LP+LRRR  RR  L   L RYS
Sbjct:  159 PLEVAAQTGRSAVVSELLREFGIRCCGGPSGGLDALRVAAVYG--QVDIMSMLMDAGVVDPVGLALLAAVGSGKEAAVGFLLRQQE----ERWQTSYVNIARDDDGLTALLWS--FRGNK---NKPCNPRITRRLVDAGADTTSAVQLRAKRSRTCVNVTPLEYVNDWALRETNGDHPATDEQLLRLEATRRVLLRVVAVHAVSWIWPSDAPLLARPAN----SPRTAKHSPTQLTTVLPVLRRRAGRRALLWDTLFRYS 403          
BLAST of mRNA_L-elsbetiae_contig2010.6040.1 vs. uniprot
Match: D7G1U9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U9_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 3.290e-37
Identity = 106/252 (42.06%), Postives = 139/252 (55.16%), Query Frame = 1
Query:  598 QRGDLNVVQELIEQRGIKGCAGPSGGLNALHMAAERNNQRVETMAMLTGAGVVDTGPALSAAAAAVGGEAAVKFLLQQRQLAGSPAGVVGYVN-CRDHLGMTPLFCSIDFRGNALGVPRLVSPRIVRLLVEAGADTTSGFRFPNAAGGVTTFRTPLAYTNELLRKKRVREIGLTEEQLHGLEAIRRLLMRVEAVHAVSWLWQGDFSSIAHAAGGANGTTRTTPASSPQLTLMLPILRRR--RRGALLAPLLR 1344
            Q G   VV+ELI+Q G++GC G S G+ +L +AA    Q V+ M +LT  GVVDTG AL   AA    E +VKFLLQ +       G   YVN   D  G TPL C+I+  G++       SPRI R L++ GADT S      +    T+  TPL +    LR+ +V     TEEQL  L+AI RLL ++EAVHAVSWLW+   + I HA G A+   + T A  P L  M  +LR    +RG +L  + R
Sbjct:  189 QHGHSEVVRELIQQLGVRGCGGVSAGVESLRLAA--TEQYVDIMGILTVGGVVDTGRAL-VVAAEYSREESVKFLLQHQA-----GGGTWYVNNTLDPFGRTPLVCTIEACGSS-------SPRIARFLIDDGADTKSTVLVTRSGEWTTSRDTPLGFATRSLRQNKVGGKNATEEQLRSLKAIHRLLSQIEAVHAVSWLWRSSDTPIGHAVGAASSRMKPTTAG-PTLKRMSTVLRTTVGKRGVVLRAVYR 424          
BLAST of mRNA_L-elsbetiae_contig2010.6040.1 vs. uniprot
Match: D8LL76_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL76_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 4.120e-35
Identity = 118/289 (40.83%), Postives = 152/289 (52.60%), Query Frame = 1
Query:  493 TWISSGSSFVRKRTRY*ARRPRPSFTGVFPLDAAAQRGDLNVVQELIEQRGIKGCAGPSGGLNALHMAAERNNQRVETMAMLTGAGVVDTGPALSAAAAAVGGEAAVKFLLQQRQLAGSPAGVVGYVNC-RDHLGMTPLFCSIDFRGNALGVPRLVSPRIVRLLVEAGADTTSGFRFPNAAGGVTTFRTPLAYTNELLRKKRVREIGLTEEQLHGLEAIRRLLMRVEAVHAVSWLWQGDFSSIAHAAGGANGTTRTTPASSPQLTLMLPILRRR--RRGALLAPLLRYS 1350
            T +SSG++FV                   PLD AA  G L V +EL+++ GI+GCAG S G++AL  AA   +Q ++ MA+L  AGVVDTG AL  A   +G E A+KFLL+Q+   G       Y +  RD  G TPL  ++             SPR+VRLLV+AGAD T   R P+  G  T + TPL      L +K V E   T +QL  L A RRLL++VE VHA SWLW G     A A G     T +T  +   L   LPI+ RR  RRGA L  + R +
Sbjct:  174 TRMSSGNTFV-------------------PLDGAALNGHLAVARELVQRFGIRGCAGASAGVDALGQAAV--DQHLDVMALLCDAGVVDTGNAL-VATVFLGRERALKFLLEQK---GEGTARTTYASTPRDGRGHTPLLSAVTTGP--------CSPRVVRLLVDAGADATLAVRVPDGFGRSTKY-TPLDCATRCLAEKVVDEDFATAQQLRNLRASRRLLLQVEVVHATSWLWGGHAGCPA-APGKKRAQTEST--NGKPLKSRLPIMWRRSARRGAALPGVFRLA 425          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2010.6040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJA9_9PHAE6.100e-5451.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVK3_ECTSI1.900e-4947.51EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FT11_ECTSI1.010e-4750.37EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G1H7_ECTSI1.090e-4647.65EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1... [more]
D8LJF9_ECTSI8.090e-4645.62EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KQV0_9PHAE1.340e-4349.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSC5_ECTSI6.400e-4250.00EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FVU3_ECTSI1.370e-3844.62EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G1U9_ECTSI3.290e-3742.06EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LL76_ECTSI4.120e-3540.83EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2010contigL-elsbetiae_contig2010:5178..7807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.8
Seed ortholog evalue1.5e-33
Seed eggNOG ortholog2880.D7FT11
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1862
Cds size672
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2010.6040.1prot_L-elsbetiae_contig2010.6040.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2010 5868..7307 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815832.443992-UTR-L-elsbetiae_contig2010:5177..58671622815832.443992-UTR-L-elsbetiae_contig2010:5177..5867Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2010 5178..5867 +
1691683132.7806628-UTR-L-elsbetiae_contig2010:5177..58671691683132.7806628-UTR-L-elsbetiae_contig2010:5177..5867Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2010 5178..5867 +
1622815832.4828408-UTR-L-elsbetiae_contig2010:7307..78071622815832.4828408-UTR-L-elsbetiae_contig2010:7307..7807Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2010 7308..7807 +
1691683132.8152387-UTR-L-elsbetiae_contig2010:7307..78071691683132.8152387-UTR-L-elsbetiae_contig2010:7307..7807Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2010 7308..7807 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815832.4542973-CDS-L-elsbetiae_contig2010:5867..65201622815832.4542973-CDS-L-elsbetiae_contig2010:5867..6520Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2010 5868..6520 +
1691683132.7961664-CDS-L-elsbetiae_contig2010:5867..65201691683132.7961664-CDS-L-elsbetiae_contig2010:5867..6520Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2010 5868..6520 +
1622815832.4662642-CDS-L-elsbetiae_contig2010:7288..73071622815832.4662642-CDS-L-elsbetiae_contig2010:7288..7307Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2010 7289..7307 +
1691683132.8066-CDS-L-elsbetiae_contig2010:7288..73071691683132.8066-CDS-L-elsbetiae_contig2010:7288..7307Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2010 7289..7307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2010.6040.1

>prot_L-elsbetiae_contig2010.6040.1 ID=prot_L-elsbetiae_contig2010.6040.1|Name=mRNA_L-elsbetiae_contig2010.6040.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=224bp
MAAERNNQRVETMAMLTGAGVVDTGPALSAAAAAVGGEAAVKFLLQQRQL
AGSPAGVVGYVNCRDHLGMTPLFCSIDFRGNALGVPRLVSPRIVRLLVEA
GADTTSGFRFPNAAGGVTTFRTPLAYTNELLRKKRVREIGLTEEQLHGLE
AIRRLLMRVEAVHAVSWLWQGDFSSIAHAAGGANGTTRTTPASSPQLTLM
LPILRRRRRGALLAPLLRYSSCP*
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mRNA from alignment at L-elsbetiae_contig2010:5178..7807+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2010.6040.1 ID=mRNA_L-elsbetiae_contig2010.6040.1|Name=mRNA_L-elsbetiae_contig2010.6040.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2630bp|location=Sequence derived from alignment at L-elsbetiae_contig2010:5178..7807+ (Laminarionema elsbetiae ELsaHSoW15)
GTACAGGGATGTTACGGCCTGAAATGATTCCGCCTGGACAGCAGTGGCCT CGGGGGCCTCCAAATGACCTACACTTTGCGGCCCACCGCGGTTCCATGGA GCGCACGATAGCCCTCCTCTCGAGGGGGTTGATCAACATCGATCAAGGCG ACCCAGCAGGTGTTACCCCGCTCATGTACGCCGCGCAGAAGGGCCACTCG CACGTTGCCAAGGTCCTGCTGGACAGGGGAGCCAACATGTCCATAGCGGA GGATAGTGGTACTGCGGCCCTACACATCTCCGCTCAAAATGGACACCTCG CCGTGACCGTCGAACTAATTAAGGCCGGCGCCGACCTGCATGCAAGGGAC TCTGAAGGTGCCGCACCGCTTCATATCGCTGCGCAGCAAGGACACTCAGG CGTGGTGGCAGCACTGATAGAGGCAGGCGCGAATGTCAACACTCGTGGGA AGGCTGGAGCTACACCGATCCTGATGGCGATCAGTTTCGGACACTTGGAT ATCGTCAGGAAGCTCCTTCGTGCGAAAGCGAACACGTTATTGAGCGCGAC GACCTCGTCCATCTTTCACAGGAGTCTTTCCGCTGGATGCAGCGGCGCAA CGCGGTGACTTGAACGTCGTACAGGAATTGATCGAGCAGCGCGGAATCAA AGGATGTGCTGGCCCAAGCGGCGGTCTAAATGCCCTCCATATGGCCGCGG AAAGGAATAATCAGCGCGTGGAGACCATGGCCATGTTGACAGGCGCCGGA GTGGTCGATACAGGGCCAGCATTGAGCGCCGCCGCCGCGGCTGTTGGTGG CGAAGCGGCAGTGAAGTTCCTGTTGCAGCAACGGCAGCTGGCGGGGTCCC CGGCCGGCGTAGTTGGATACGTCAACTGCCGCGACCATCTCGGCATGACG CCCTTGTTCTGTAGCATCGACTTTAGAGGTAACGCGCTGGGCGTGCCCCG GTTGGTTTCGCCCAGGATTGTGCGGCTGCTTGTCGAGGCCGGAGCAGACA CAACGTCAGGCTTTCGATTCCCGAACGCAGCAGGAGGTGTGACCACCTTC CGCACGCCGCTGGCCTACACCAACGAACTCCTCCGCAAGAAGAGGGTGCG AGAAATAGGCCTGACAGAGGAGCAGCTGCACGGGCTGGAGGCCATCCGCC GCTTGCTGATGCGGGTGGAGGCGGTGCACGCGGTGTCTTGGCTGTGGCAG GGCGATTTCTCGTCCATCGCCCATGCTGCAGGGGGTGCAAACGGTACCAC CAGGACAACTCCGGCTAGCAGCCCGCAGCTGACATTGATGCTGCCGATCC TGAGGCGTAGAAGACGTGGTGCGCTCCTGGCGCCGCTGCTGAGGTGGGGC GTGTTCGTTTGTGTTTTCGTTGCTTCTGTTCTGGAGTCCCATGCAAATTA TGTGGTGTCCTGTCTGGAGATATGATGTTGAGGTAACAGAAAATAAACAC TTGGGGGGCATTTCTGATATATTTGTGTTTTTGCGTCCCGCTGGAAGTTT TCGGTTCTCTCACGTACATATGCGTTGGCTGCCTGTGTTGATTGACTCTT GCGCACACGTTTTACACTGCGCTTCGCTGCCTCAGCGTCGTCATAATTTC TCGGCGTGCGCTCGTGCCCCAGGGCTGAGTAGGCAGGCACCCTTGTGGTC CGCGGCAGAAGTTTTGGTGAAAGGCCGATGGCTCTAAACTGTTACAGAAA GTAGACGATCGCGCGTGCACATATGGGTTGAAGGTTGAGAGAAACGAATG TTGTGGTCAGTAGTGAATGTTTTGTGTTTGAGCATGTATGTGCGTATACC AGTACTGGTTACACACTGATAATAGATCTTTAGGACTACGACATATGGCC TTCTGATTGGTCGCAGCGCTGTGGTCGTTACCAACCTCGCGTATACTGTT GGGCAACGTCAAGACCAACGCCATGATGACCTGTTGGTGAAGGTCATGAC CTATCATCATGAAACCCTACATACTGGTCATGACCTTCGTGAACAAGTCA TCGAGTCTTTACGTCCACTCTATATCCTGGCGTGGCCGATCGACCTTCCC TCCCCCTCTCCCCCGCCGTGTTTTGTGGCCATTTTTGCCACACATTATCG TGCTGGTTCAGGTATTCGAGCTGCCCGTGACTGGGAAGCGGCCCACGCGG TGTCTAAGGCGGCGGTTCGTTCACCTTTTTTATTTTTCGGCCTGACTGAA ACAGACACACGTGTGGGCAGTCTGGACGTAGATAAAGCAGTCCAGTGAAC GGCGTTGCCGGGGATGCATGACATGTATTTTGTTTTCTCTCTCCTGTTCT TTTCGTTATATTTATCTTCTTTTTTGGGGGCATATGACAACAATAATATC GCATGTAAACCATTTCGTTCCAATAACCTTGCGCTTTCTAGGCTTACCTG TCGTCAAGGTGGTACACGCCCTCCTGTGTGACCCCGGTGGGGTCGTCTAG ATAGTCATAGTGGAGTATGGGGGCCATTGGGGCAGACGACGAGACGAATA TGCCAATAATGGGAGGGAAAAAAAAAGAAGAAAAAAAATGCTGGACCTTT TAGAGTGCTCGCGGGGCTTCCGTTTCGGGGGGGCAAAAGGGGCCGTTTAC AGCGCCGTAACCTTCAGCCAGTATGGCACT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2010:5178..7807+

>mRNA_L-elsbetiae_contig2010.6040.1 ID=mRNA_L-elsbetiae_contig2010.6040.1|Name=mRNA_L-elsbetiae_contig2010.6040.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1344bp|location=Sequence derived from alignment at L-elsbetiae_contig2010:5178..7807+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGCGGAAAGGAATAATCAGCGCGTGGAGACCATGGCCATGTTGAC
AGGCGCCGGAGTGGTCGATACAGGGCCAGCATTGAGCGCCGCCGCCGCGG
CTGTTGGTGGCGAAGCGGCAGTGAAGTTCCTGTTGCAGCAACGGCAGCTG
GCGGGGTCCCCGGCCGGCGTAGTTGGATACGTCAACTGCCGCGACCATCT
CGGCATGACGCCCTTGTTCTGTAGCATCGACTTTAGAGGTAACGCGCTGG
GCGTGCCCCGGTTGGTTTCGCCCAGGATTGTGCGGCTGCTTGTCGAGGCC
GGAGCAGACACAACGTCAGGCTTTCGATTCCCGAACGCAGCAGGAGGTGT
GACCACCTTCCGCACGCCGCTGGCCTACACCAACGAACTCCTCCGCAAGA
AGAGGGTGCGAGAAATAGGCCTGACAGAGGAGCAGCTGCACGGGCTGGAG
GCCATCCGCCGCTTGCTGATGCGGGTGGAGGCGGTGCACGCGGTGTCTTG
GCTGTGGCAGGGCGATTTCTCGTCCATCGCCCATGCTGCAGGGGGTGCAA
ACGGTACCACCAGGACAACTCCGGCTAGCAGCCCGCAGCTGACATTGATG
CTGCCGATCCTGAGGCGTAGAAGACGTGGTGCGCTCCTGGCGCCGCTGCT
GAGATGGCCGCGGAAAGGAATAATCAGCGCGTGGAGACCATGGCCATGTT
GACAGGCGCCGGAGTGGTCGATACAGGGCCAGCATTGAGCGCCGCCGCCG
CGGCTGTTGGTGGCGAAGCGGCAGTGAAGTTCCTGTTGCAGCAACGGCAG
CTGGCGGGGTCCCCGGCCGGCGTAGTTGGATACGTCAACTGCCGCGACCA
TCTCGGCATGACGCCCTTGTTCTGTAGCATCGACTTTAGAGGTAACGCGC
TGGGCGTGCCCCGGTTGGTTTCGCCCAGGATTGTGCGGCTGCTTGTCGAG
GCCGGAGCAGACACAACGTCAGGCTTTCGATTCCCGAACGCAGCAGGAGG
TGTGACCACCTTCCGCACGCCGCTGGCCTACACCAACGAACTCCTCCGCA
AGAAGAGGGTGCGAGAAATAGGCCTGACAGAGGAGCAGCTGCACGGGCTG
GAGGCCATCCGCCGCTTGCTGATGCGGGTGGAGGCGGTGCACGCGGTGTC
TTGGCTGTGGCAGGGCGATTTCTCGTCCATCGCCCATGCTGCAGGGGGTG
CAAACGGTACCACCAGGACAACTCCGGCTAGCAGCCCGCAGCTGACATTG
ATGCTGCCGATCCTGAGGCGTAGAAGACGTGGTGCGCTCCTGGCGCCGCT
GCTGAGGTATTCGAGCTGCCCGTGAGTATTCGAGCTGCCCGTGA
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