mRNA_L-elsbetiae_contig2009.6033.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig2009.6033.1 vs. uniprot
Match: D8LCB1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB1_ECTSI) HSP 1 Score: 117 bits (293), Expect = 1.240e-24 Identity = 88/257 (34.24%), Postives = 139/257 (54.09%), Query Frame = 1 Query: 10 ASTSPIEKCRLQLHVTALLSAILSAIYFAMVV---EDELWLSLV-VLGVLQVPVFISVPVLSTRMWIYTNDRRVLQKSPEVLMLSLWWESSVGHCVTYTLVSIPPAGAVVLAIAGRGEAAVKVITFQVLVLAPSLSAAFLVLGKSLLKGIDESLQQQQQRKQQLQRMGVSREDGKEAGTQPQNRSSGDPLMLAARNKVKRVVMFAVAVPMQTACMLIFASMTRYGSEVPLLFYLTPMTFTPPIWNIFNVTIHRGRTQ 768 AS S +EKCR LH+ ++ A++ YF MV+ + LW+S + +L Q + I +L+ RMWIY ND R+ +++PE+L +S E G V+ T++ + PA A VLA+A +AA KV L L L G +LL+ +++ L+ +R + R + AGT PL+ AAR +K + F + V + TA ++I T YG+ PL+F+ P F+PP+W +FNV +H GR++ Sbjct: 86 ASISSVEKCRRWLHIVVIIHAVIGLCYFGMVLLLDSERLWMSTIFMLSAGQTMMTIG-GILTVRMWIYCNDPRLTRETPEILAISEALERPTGCFVSNTVMCVGPAIATVLAVAKSLQAAGKVSAVAFLGLIVFCDFIILKSGTALLRTVNKYLRNTVERSE--------RSNSIVAGT-----VGSLPLLKAARKNIKFALYFCLVVSLLTAFLMI-CLFTTYGATAPLIFFGIPYGFSPPVWFVFNVQLHAGRSR 327
BLAST of mRNA_L-elsbetiae_contig2009.6033.1 vs. uniprot
Match: D7G622_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G622_ECTSI) HSP 1 Score: 109 bits (273), Expect = 6.400e-22 Identity = 89/295 (30.17%), Postives = 146/295 (49.49%), Query Frame = 1 Query: 46 LHVTALLSAILSAIYFAMVVEDEL-WLSLVVLGVLQVPVFISV-PVLSTRMWIYTNDRRVLQKSPEVLMLSLWWESSVGHCVTYTLVSIPPAGAVVLAIAGRGEAAVKVITFQVLVLAPSLSAAFLVLGKSLLKGIDESLQQQQQRKQQLQRMGVSREDGKEA------GTQ-------------------------------PQNRSS------------GDPLMLAARNKVKRVVMFAVAVPMQTACMLIFASMTRYGSEVPLLFYLTPMTFTPPIWNIFNVTIHRGRTQLSA 777 +HVTA+ +A++S YF +V+ + W + VL V+ + +SV L+ RMWIYTND R++Q S +L +S E G ++Y ++S P A VLA+ GR EAA K++ ++L F + G++LL+ ID SLQ + R + V ED +E+ GT+ P+ R S GD + AA+ KV+ + F + +Q +L+F+ ++YG+ +PL+ + MT P +W+ FN+ +H GR++ SA Sbjct: 1 MHVTAVANAVVSLFYFLLVLLVKARWHEISVLVVILNQITVSVCGFLTVRMWIYTNDARLMQASSTMLRISSVLEEKNGQRLSYLVLSTGPVVATVLALLGRTEAAAKLVAVTFIMLIVFTDTTFWIFGRALLRAIDASLQNSRMRAMKS----VFEEDRRESVLATLGGTEADEERGRRGSGXXXXXXXXXXSSSRTWSSVGPRRRGSWWGGEGRDESELGDGELQAAKRKVRWAMGFCAHMSLQGYAILLFSIFSKYGTSMPLILFGVQMTIVPLVWHAFNIQLHAGRSRGSA 291
BLAST of mRNA_L-elsbetiae_contig2009.6033.1 vs. uniprot
Match: A0A6H5LCQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCQ2_9PHAE) HSP 1 Score: 105 bits (262), Expect = 2.430e-20 Identity = 88/289 (30.45%), Postives = 144/289 (49.83%), Query Frame = 1 Query: 46 LHVTALLSAILSAIYFAMVVEDEL-WLSLVVLGVLQVPVFISVPVLST-RMWIYTNDRRVLQKSPEVLMLSLWWESSVGHCVTYTLVSIPPAGAVVLAIAGRGEAAVKVITFQVLVLAPSLSAAFLVLGKSLLKGIDESLQQQQQRKQQLQ-----------------------RMGVSREDGKEAGTQPQNRSSG--------------DPLML------AARNKVKRVVMFAVAVPMQTACMLIFASMTRYGSEVPLLFYLTPMTFTPPIWNIFNVTIHRGRTQLSA 777 +HVTA+ +A +S YF +V+ E W + VL ++ + +SV ST RMWIYTND R++Q S +L +S E G ++Y ++S P A VLA+ GR EAA K++ ++L +F + G++LL+ ID SLQ ++R + R G S G+ G + SSG D L AA+ KV+ V++F + ++ +L+ + +++YG+ VPL+ + M P +W+ FN+ +H GR++ SA Sbjct: 1 MHVTAVANAAISLFYFLLVLLVEARWHEISVLVMILNQITVSVCGFSTVRMWIYTNDTRLMQGSITILRISAALEKKNGQRLSYLVLSTGPVVATVLALLGRTEAAAKLVAVTFIMLIVVADTSFWIFGRALLRAIDASLQNSRKRAMESVFGKDRRESVLAVLGGTEADEEGGRRGSSISAGEGGGRLSRKWSSGRLQRRGSWWGGEGRDESELGGGELQAAKRKVRWVMVFCALMSLEGYAILLLSILSKYGTTVPLILFGVQMAIFPLVWHAFNIQLHAGRSRGSA 289
BLAST of mRNA_L-elsbetiae_contig2009.6033.1 vs. uniprot
Match: A0A6H5KM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM92_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 9.040e-18 Identity = 84/293 (28.67%), Postives = 139/293 (47.44%), Query Frame = 1 Query: 7 AASTSPIEKCRLQLHVTALLSAILSAIYFAMVV---EDELWLSLVVL-GVLQVPVFISVPVLSTRMWIY------------------------------TNDRRVLQKSPEVLMLSLWWESSVGHCVTYTLVSIPPAGAVVLAIAGRGEAAVKVITFQVLVLAPSLSAAFLVLGKSLLKGIDESLQQQQQRKQQLQRMGVSREDGKEAGTQPQNRSSGDPLMLAARNKVKRVVMFAVAVPMQTACMLIFASMTRYGSEVPLLFYLTPMTFTPPIWNIFNVTIHRGRTQLSAGP 783 AASTS +EKCR LH+ ++ A++ YF MV+ + LW+S + + G+ Q+ + I +L+ RMW+Y +ND R+++++PE+LM+S E G V+ T++ + PA A VLA A +AA V L L L +LL+ +++ L+ R + + + AGT L+ AAR +K + F V V + T +++ T YG+ PL+F P +PP+W +FN+ +H GR++ P Sbjct: 85 AASTSSVEKCRRWLHIVVIIHAVIGLCYFGMVLLLDSERLWMSTIFMFGIGQIMMTIG-GILTVRMWLYCLTSDEQRSPLQLNRFPYVSPLRNHILFLASNDPRLIRETPELLMISEALERPTGLFVSNTVMCVGPAVATVLAAAKSLQAACMVSAVAFLGLIVFCDFIILKTATALLQTVNKYLRNSVVRSE--------KSNSIMAGT-----VGSLQLLKAARKNIKFALYFCVVVSLLTFSIVMIGLFTTYGATAPLIFSGIPYGCSPPVWFVFNIQLHAGRSRNRTEP 363 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2009.6033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig2009.6033.1 >prot_L-elsbetiae_contig2009.6033.1 ID=prot_L-elsbetiae_contig2009.6033.1|Name=mRNA_L-elsbetiae_contig2009.6033.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=274bp MVVEDELWLSLVVLGVLQVPVFISVPVLSTRMWIYTNDRRVLQKSPEVLMback to top mRNA from alignment at L-elsbetiae_contig2009:3876..6666+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig2009.6033.1 ID=mRNA_L-elsbetiae_contig2009.6033.1|Name=mRNA_L-elsbetiae_contig2009.6033.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2791bp|location=Sequence derived from alignment at L-elsbetiae_contig2009:3876..6666+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig2009:3876..6666+ >mRNA_L-elsbetiae_contig2009.6033.1 ID=mRNA_L-elsbetiae_contig2009.6033.1|Name=mRNA_L-elsbetiae_contig2009.6033.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1644bp|location=Sequence derived from alignment at L-elsbetiae_contig2009:3876..6666+ (Laminarionema elsbetiae ELsaHSoW15)back to top |