mRNA_L-elsbetiae_contig1999.5988.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1999.5988.1
Unique NamemRNA_L-elsbetiae_contig1999.5988.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1999.5988.1 vs. uniprot
Match: A0A7S3UVD8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVD8_HETAK)

HSP 1 Score: 60.8 bits (146), Expect = 5.320e-10
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:   22 PSWKYPNSDRAFGEPPLFSCTNSYKRVLEAHLVEAVAKITRSYEAMEEGTLRLSNLKADVGAELWLMQSSLDEVRK 249
            PSWK P++     EPPL +CT SY+ +L  HL  +VA++   Y      T RLSNLKA +GA+L    +S++E R+
Sbjct:   24 PSWKVPDTLAKHSEPPLGTCTPSYQELLCRHLERSVAELRAEYSHRPATTQRLSNLKAQLGADL----ASMEERRR 95
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1999.5988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3UVD8_HETAK5.320e-1043.42Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1999contigL-elsbetiae_contig1999:2274..3869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size278
Cds size276
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1999.5988.1prot_L-elsbetiae_contig1999.5988.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1999 2276..3869 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815825.214029-CDS-L-elsbetiae_contig1999:2275..23111622815825.214029-CDS-L-elsbetiae_contig1999:2275..2311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1999 2276..2311 -
1691683127.372279-CDS-L-elsbetiae_contig1999:2275..23111691683127.372279-CDS-L-elsbetiae_contig1999:2275..2311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1999 2276..2311 -
1622815825.2282352-CDS-L-elsbetiae_contig1999:3029..31161622815825.2282352-CDS-L-elsbetiae_contig1999:3029..3116Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1999 3030..3116 -
1691683127.3858757-CDS-L-elsbetiae_contig1999:3029..31161691683127.3858757-CDS-L-elsbetiae_contig1999:3029..3116Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1999 3030..3116 -
1622815825.241031-CDS-L-elsbetiae_contig1999:3523..36471622815825.241031-CDS-L-elsbetiae_contig1999:3523..3647Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1999 3524..3647 -
1691683127.3975518-CDS-L-elsbetiae_contig1999:3523..36471691683127.3975518-CDS-L-elsbetiae_contig1999:3523..3647Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1999 3524..3647 -
1622815825.2534316-CDS-L-elsbetiae_contig1999:3840..38691622815825.2534316-CDS-L-elsbetiae_contig1999:3840..3869Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1999 3841..3869 -
1691683127.4082832-CDS-L-elsbetiae_contig1999:3840..38691691683127.4082832-CDS-L-elsbetiae_contig1999:3840..3869Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1999 3841..3869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1999.5988.1

>prot_L-elsbetiae_contig1999.5988.1 ID=prot_L-elsbetiae_contig1999.5988.1|Name=mRNA_L-elsbetiae_contig1999.5988.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
KEDAAKHPSWKYPNSDRAFGEPPLFSCTNSYKRVLEAHLVEAVAKITRSY
EAMEEGTLRLSNLKADVGAELWLMQSSLDEVRKGLRAANEAE
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mRNA from alignment at L-elsbetiae_contig1999:2274..3869-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1999.5988.1 ID=mRNA_L-elsbetiae_contig1999.5988.1|Name=mRNA_L-elsbetiae_contig1999.5988.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1596bp|location=Sequence derived from alignment at L-elsbetiae_contig1999:2274..3869- (Laminarionema elsbetiae ELsaHSoW15)
AAAGAGGACGCTGCGAAACACCCGTCGTGGTAAGAGTCACTGAAGTATCT
TAAGTGATTGGGTGTAGTAAAATCATAGATGACGTCATCGGAATGTTGCC
GAGAGACAAGCGCGCGTGTGTGTGATATTCTCCGACTGCCTTCATCTCAG
ACAACTCGGTTGTACACTGCTGCCAGGAACTAACATGCCTGTGAACTTTC
CCGCCTGCGATGGTTCTGTCAGGAAATACCCGAACTCAGACAGGGCTTTC
GGGGAGCCACCGCTGTTTTCCTGCACTAACAGTTACAAGAGAGTGCTTGA
AGCGCACCTTGTGGAGGCTGTGGCCAAGATTACACGGAGCTACGAGGTAT
GTATGTATGTAGGCACTACATACACGCGCGGAGAGCAGCCTTGGCACCTT
GGCGAAGTGCGTTCAAATGCGCTAGTGTTTAGTTATGGTTAGTGCTTTCA
TTGGATGCTGCACGCACTACAGTCTCGAGGTCCGTGAAAGAGAAGGGAGT
GAACCACCCTTGATGAAATGACTTTGGTGTAGTTGGTACCGTAGAGTGTA
TCATCGCATCGTATTGGGGAGAGATAGTTGAGTGCCCAAGCCGTATTTAA
GAGAGATGCTTGTGTGCCCATGCATACTTAACTAGACGGCCCTCTCTGCT
CCCCGCTCTATTTGTGTCGGGTCTGTGCGAACGTCCTACGGTTCATTCTA
TTTCCTCCGCGAAACCGCGCGATTGGGTTTTTTCCTTCCGGACTCTTTCT
AAGGCGATGGAAGAGGGGACTCTAAGGCTATCCAACCTCAAGGCCGACGT
CGGGGCGGAGCTGTGGTTGATGCAATCCTCTCTTGACGAGGTGAATTGCC
GGCACTTCCAGGACAAAGCCATTATCGCAGCATCTTATGTAAAACGATGT
GTGCGCGAAACTTTGCTGTCGCCCGCTATCGTTTAGGCTATCTCTGCGTA
AATAGAGACGATGCAGACGGGGGATTACTATGCCTTTCGAATTTGAAGTT
GGCATCAGGCCCCGGCTTTGGTTGATGCCATCGACGAGGTACGCTTCTTC
CTATATTACACCGGAACTTGAATTCGTTTTGCCTTAACATCAAATCAACT
ACGCCGCTACTCAAAACCGGCTCTGGCCATGTGAAGCATGCCTACTCATC
CCTAGTTTCAAAGCCAGTTCTGGCCCCATGTGGGGCTTACTCAGCCCGAC
CAGGTCGAGATAACATTGCAAGCGTGTGCTCTGTAGGGTACGGGTGACAG
ATCTTTCAAAATTTCTCTGTAGGGTATTGGAAATGTTACAGAACCCCCAC
AGAAGTTCTCTGTAGGGCATCAGAAGTGACGAACTTACAGAGTTCTCTGT
AGGTGTGATGACAGAGCTTACATAAATTCTCTGTAGGGTATCGACACTGC
CACAGAATTCACAGAAGTTCTCTGTAGTGCAATAAATACCCTTCACAACA
AACTCTTGAAACATTTCAACCCCACGGTTGCCAAAGAGCGAGTATTTACG
GAGTACATCACTGCTGCCATCCACGGCGGACACCACACAATGCGTGCCAC
CACACCAGGTGCGAAAGGGCTTGAGAGCGGCCAACGAGGCGGAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1999:2274..3869-

>mRNA_L-elsbetiae_contig1999.5988.1 ID=mRNA_L-elsbetiae_contig1999.5988.1|Name=mRNA_L-elsbetiae_contig1999.5988.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig1999:2274..3869- (Laminarionema elsbetiae ELsaHSoW15)
AAAGAGGACGCTGCGAAACACCCGTCGTGAAAGAGGACGCTGCGAAACAC
CCGTCGTGGAAATACCCGAACTCAGACAGGGCTTTCGGGGAGCCACCGCT
GTTTTCCTGCACTAACAGTTACAAGAGAGTGCTTGAAGCGCACCTTGTGG
AGGCTGTGGCCAAGATTACACGGAGCTACGAGGAAATACCCGAACTCAGA
CAGGGCTTTCGGGGAGCCACCGCTGTTTTCCTGCACTAACAGTTACAAGA
GAGTGCTTGAAGCGCACCTTGTGGAGGCTGTGGCCAAGATTACACGGAGC
TACGAGGCGATGGAAGAGGGGACTCTAAGGCTATCCAACCTCAAGGCCGA
CGTCGGGGCGGAGCTGTGGTTGATGCAATCCTCTCTTGACGAGGCGATGG
AAGAGGGGACTCTAAGGCTATCCAACCTCAAGGCCGACGTCGGGGCGGAG
CTGTGGTTGATGCAATCCTCTCTTGACGAGGTGCGAAAGGGCTTGAGAGC
GGCCAACGAGGCGGAGGTGCGAAAGGGCTTGAGAGCGGCCAACGAGGCGG
AG
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