mRNA_L-elsbetiae_contig19961.5983.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19961.5983.1
Unique NamemRNA_L-elsbetiae_contig19961.5983.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig19961.5983.1 vs. uniprot
Match: A0A6H5JDG1_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JDG1_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 1.160e-55
Identity = 106/143 (74.13%), Postives = 114/143 (79.72%), Query Frame = 1
Query:    1 WQAGSGKIIRPSKEEMFFLPQRPYCTLGPLRDQITYPSSQVVGDVEEVG-DGSGGQVEGGVTEPVGAGGGSNSEDGELLSLLEKVDLGSLASMMGDGDSHAGLDAVRDWSDLLSLGEQQRLAFARLLYNRPTLAILDESTSAL 426
            W  GSGKI+RP+KEEMFFLPQRPYCTLGPLRDQITYPSS   G  E  G DG  G VEG   +      GS ++D ELL LLEKVDLG LA MMG GD+HAGL AVRDWSD+LSLGEQQRLAFARLLYN+PTLAILDESTSAL
Sbjct:  602 WTTGSGKIVRPTKEEMFFLPQRPYCTLGPLRDQITYPSSH--GGAEAAGEDGDAGAVEGTAEK------GSIADDDELLDLLEKVDLGRLAVMMGSGDAHAGLGAVRDWSDMLSLGEQQRLAFARLLYNKPTLAILDESTSAL 736          
BLAST of mRNA_L-elsbetiae_contig19961.5983.1 vs. uniprot
Match: A0A835ZDB9_9STRA (Putative ABC transporter Nda n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDB9_9STRA)

HSP 1 Score: 152 bits (385), Expect = 9.140e-41
Identity = 85/142 (59.86%), Postives = 94/142 (66.20%), Query Frame = 1
Query:    1 WQAGSGKIIRPSKEEMFFLPQRPYCTLGPLRDQITYPSSQVVGDVEEVGDGSGGQVEGGVTEPVGAGGGSNSEDGELLSLLEKVDLGSLASMMGDGDSHAGLDAVRDWSDLLSLGEQQRLAFARLLYNRPTLAILDESTSAL 426
            W AG G I RP  EE+FFLPQRPYCTLGPLRDQITYP  +                EG   EP          D ELL LL +V L  LAS+ GDGD HAGL +V+DWSD+LSLGEQQRLAFARLLYN P LA+LDE+TSAL
Sbjct:  426 WGAGCGAITRPPPEEIFFLPQRPYCTLGPLRDQITYPHRK----------------EG---EP---------SDAELLDLLRRVGLPDLASLSGDGDEHAGLWSVKDWSDMLSLGEQQRLAFARLLYNEPRLAVLDEATSAL 539          
BLAST of mRNA_L-elsbetiae_contig19961.5983.1 vs. uniprot
Match: A0A6V1QMT5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QMT5_HETAK)

HSP 1 Score: 146 bits (369), Expect = 3.190e-38
Identity = 78/142 (54.93%), Postives = 94/142 (66.20%), Query Frame = 1
Query:    1 WQAGSGKIIRPSKEEMFFLPQRPYCTLGPLRDQITYPSSQVVGDVEEVGDGSGGQVEGGVTEPVGAGGGSNSEDGELLSLLEKVDLGSLASMMGDGDSHAGLDAVRDWSDLLSLGEQQRLAFARLLYNRPTLAILDESTSAL 426
            W  G+G I RP  +EMFFLPQRPYCTLG LRDQ+TYP                         P G     ++ D +LL++L+KVDLG+LA  MG GD HAGL+ VRDWS  LSLGEQQRLAF RLL++RP++AILDE+TSAL
Sbjct:  523 WTRGAGVITRPPSDEMFFLPQRPYCTLGSLRDQLTYPL------------------------PAG-----DTPDADLLAVLDKVDLGALAERMGGGDPHAGLNKVRDWSATLSLGEQQRLAFGRLLWSRPSVAILDEATSAL 635          
BLAST of mRNA_L-elsbetiae_contig19961.5983.1 vs. uniprot
Match: A0A7S0V959_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V959_9CRYP)

HSP 1 Score: 130 bits (327), Expect = 1.730e-34
Identity = 73/142 (51.41%), Postives = 90/142 (63.38%), Query Frame = 1
Query:    1 WQAGSGKIIRPSKEEMFFLPQRPYCTLGPLRDQITYPSSQVVGDVEEVGDGSGGQVEGGVTEPVGAGGGSNSEDGELLSLLEKVDLGSLASMMGDGDSHAGLDAVRDWSDLLSLGEQQRLAFARLLYNRPTLAILDESTSAL 426
            W AG+G + RP   E FFLPQRPYCTLG LR+Q+ YP               GG+V           G  +  D ELL++L+KV L +LA M+   +   GLDAVRDW+ +LSLGEQQRLAF RLL NRP+LAILDE++SAL
Sbjct:  106 WTAGNGHVTRPPPGETFFLPQRPYCTLGTLREQLLYPKLP------------GGRV-----------GALDVPDAELLAVLQKVRLPNLAKMVAGEEGGNGLDAVRDWTSMLSLGEQQRLAFGRLLVNRPSLAILDEASSAL 224          
BLAST of mRNA_L-elsbetiae_contig19961.5983.1 vs. uniprot
Match: A0A7S2PH87_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PH87_9STRA)

HSP 1 Score: 135 bits (341), Expect = 2.890e-34
Identity = 74/142 (52.11%), Postives = 96/142 (67.61%), Query Frame = 1
Query:    1 WQAGSGKIIRPSKEEMFFLPQRPYCTLGPLRDQITYPSSQVVGDVEEVGDGSGGQVEGGVTEPVGAGGGSNSEDGELLSLLEKVDLGSLASMMGDGDSHAGLDAVRDWSDLLSLGEQQRLAFARLLYNRPTLAILDESTSAL 426
            W  GSG+I+RPS ++++FLPQRPYC  G LRDQ+ YPS+++  + +   DG    +E    E       S+  D ELL +L  VDL  LAS +GDGD   GL+ V D+S+ LSLGEQQRLAF RL+ NRP+L +LDESTSAL
Sbjct:  819 WSNGSGEIVRPSSDQIYFLPQRPYCPPGSLRDQLLYPSTELSDNYDGTQDGWSRPIEQRRVEW------SSMSDAELLDVLVAVDLPGLASRIGDGDPIRGLNTVLDYSNTLSLGEQQRLAFGRLVINRPSLVVLDESTSAL 954          
BLAST of mRNA_L-elsbetiae_contig19961.5983.1 vs. uniprot
Match: A0A448ZPF5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZPF5_9STRA)

HSP 1 Score: 135 bits (340), Expect = 3.650e-34
Identity = 75/142 (52.82%), Postives = 91/142 (64.08%), Query Frame = 1
Query:    1 WQAGSGKIIRPSKEEMFFLPQRPYCTLGPLRDQITYPSSQVVGDVEEVGDGSGGQVEGGVTEPVGAGGGSNSEDGELLSLLEKVDLGSLASMMGDGDSHAGLDAVRDWSDLLSLGEQQRLAFARLLYNRPTLAILDESTSAL 426
            W AGSG I RP  E+++FLPQRPYCT+G LRDQ+ YPS +   + E     S      G    V      +  D +LL +LEKVDLG LA   GDGD   GL+ V DWS+ LSLGEQQRLAF R+L N+P L +LDE+TSAL
Sbjct:  572 WTAGSGSITRPGDEDVYFLPQRPYCTVGSLRDQLLYPSLEQQQEDEGTKXNSTDTDGNGTPRHVVN---RSLSDQDLLDVLEKVDLGELAKRSGDGDPFKGLETVLDWSNTLSLGEQQRLAFGRVLVNQPKLVVLDEATSAL 710          
BLAST of mRNA_L-elsbetiae_contig19961.5983.1 vs. uniprot
Match: A0A1E7FND4_9STRA (ABC transporter n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FND4_9STRA)

HSP 1 Score: 134 bits (337), Expect = 4.110e-34
Identity = 70/142 (49.30%), Postives = 89/142 (62.68%), Query Frame = 1
Query:    1 WQAGSGKIIRPSKEEMFFLPQRPYCTLGPLRDQITYPSSQVVGDVEEVGDGSGGQVEGGVTEPVGAGGGSNSEDGELLSLLEKVDLGSLASMMGDGDSHAGLDAVRDWSDLLSLGEQQRLAFARLLYNRPTLAILDESTSAL 426
            W AG G I RP+ E+++FLPQRPYCT+G L+DQ+ YPS +   D                         +   D +LL++LE+VDLG LAS  GDGD   GL+A  DWS+ LSLGEQQRLAF R+L N+P L I+DE+TSAL
Sbjct:  374 WTAGKGSITRPADEDVYFLPQRPYCTMGSLKDQLLYPSLEKTND-------------------------NYLSDQDLLNILEQVDLGELASRSGDGDPIRGLNACLDWSNNLSLGEQQRLAFGRVLVNKPRLVIVDEATSAL 490          
BLAST of mRNA_L-elsbetiae_contig19961.5983.1 vs. uniprot
Match: I2CQX5_NANGC (Abc transporter (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQX5_NANGC)

HSP 1 Score: 134 bits (338), Expect = 5.540e-34
Identity = 76/142 (53.52%), Postives = 92/142 (64.79%), Query Frame = 1
Query:    1 WQAGSGKIIRPSKEEMFFLPQRPYCTLGPLRDQITYPSSQVVGDVEEVGDGSGGQVEGGVTEPVGAGGGSNSEDGELLSLLEKVDLGSLASMMGDGDSHAGLDAVRDWSDLLSLGEQQRLAFARLLYNRPTLAILDESTSAL 426
            W +G G+I RP+  EMFFLPQRPYCTLG LRDQ+ YP              +    E   + P+     S +E+ ELL +LE V+LG L   MG+G +  GLD + DWS +LSLGEQQRLAF RLLYNRP LAILDE+TSAL
Sbjct:  494 WSSGCGRITRPTTAEMFFLPQRPYCTLGTLRDQLHYPQKPPSTXXXXXXFDT--SSEASSSNPLVP---SAAENEELLQILEAVNLGDLPLRMGNGSAADGLDVMTDWSGILSLGEQQRLAFGRLLYNRPKLAILDEATSAL 630          
BLAST of mRNA_L-elsbetiae_contig19961.5983.1 vs. uniprot
Match: A0A7S2XZ84_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ84_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.080e-33
Identity = 74/144 (51.39%), Postives = 88/144 (61.11%), Query Frame = 1
Query:    1 WQAGSGKIIRPSKEEMFFLPQRPYCTLGPLRDQITYPSSQVVGDVEEVGDGSGGQVEGGVTEPVGAGGGSNSEDGELLSLLEKVDLGSLASMMGDG--DSHAGLDAVRDWSDLLSLGEQQRLAFARLLYNRPTLAILDESTSAL 426
            W +G+G+++RP   EMFFLPQRPYC  GPL DQ+TYP                 Q   GV E              LL LLE+V LGSLA  M     D   GL+AVRDW+D+LSLGEQQRL FARLL+NRP +A+LDE+TSAL
Sbjct:  140 WTSGTGEVVRPPSSEMFFLPQRPYCPPGPLADQLTYP-----------------QRAEGVPED------------RLLELLEQVGLGSLAVRMAGPSMDPAKGLEAVRDWADILSLGEQQRLGFARLLFNRPRVAVLDEATSAL 254          
BLAST of mRNA_L-elsbetiae_contig19961.5983.1 vs. uniprot
Match: B7G8L4_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8L4_PHATC)

HSP 1 Score: 131 bits (330), Expect = 5.050e-33
Identity = 75/142 (52.82%), Postives = 92/142 (64.79%), Query Frame = 1
Query:    1 WQAGSGKIIRPSKEEMFFLPQRPYCTLGPLRDQITYPSSQVVGDVEEVGDGSGGQVEGGVTEPVGAGGGSNSEDGELLSLLEKVDLGSLASMMGDGDSHAGLDAVRDWSDLLSLGEQQRLAFARLLYNRPTLAILDESTSAL 426
            W  G+G + RP  EE++FLPQRPYCT+G LRDQ+ YP+     + +E     G +  G    P          D ELL +LEKVDL  +A   GDGD+  GL+AV DWS++LSLGEQQRLAF RLL NRP L ILDE+TSAL
Sbjct:  397 WTVGNGVVSRPVDEEVYFLPQRPYCTIGSLRDQLLYPAI----NAQEY---DGAEANGQKIVPRSHILKDQWTDEELLLVLEKVDLVEVAERAGDGDATKGLEAVLDWSNMLSLGEQQRLAFGRLLVNRPRLVILDEATSAL 531          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19961.5983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JDG1_9PHAE1.160e-5574.13ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A835ZDB9_9STRA9.140e-4159.86Putative ABC transporter Nda n=1 Tax=Tribonema min... [more]
A0A6V1QMT5_HETAK3.190e-3854.93Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0V959_9CRYP1.730e-3451.41Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S2PH87_9STRA2.890e-3452.11Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A448ZPF5_9STRA3.650e-3452.82Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1E7FND4_9STRA4.110e-3449.30ABC transporter n=1 Tax=Fragilariopsis cylindrus C... [more]
I2CQX5_NANGC5.540e-3453.52Abc transporter (Fragment) n=1 Tax=Nannochloropsis... [more]
A0A7S2XZ84_9STRA1.080e-3351.39Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
B7G8L4_PHATC5.050e-3352.82Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19961contigL-elsbetiae_contig19961:1064..2167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score197.6
Seed ortholog evalue3.9e-48
Seed eggNOG ortholog2880.D7G4W0
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.ATP-binding cassette sub-family D
EggNOG OGsCOG4178@1,KOG0060@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size426
Cds size426
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815824.9521248-CDS-L-elsbetiae_contig19961:1063..12401622815824.9521248-CDS-L-elsbetiae_contig19961:1063..1240Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19961 1064..1240 -
1691683127.237697-CDS-L-elsbetiae_contig19961:1063..12401691683127.237697-CDS-L-elsbetiae_contig19961:1063..1240Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19961 1064..1240 -
1622815824.9631069-CDS-L-elsbetiae_contig19961:1918..21671622815824.9631069-CDS-L-elsbetiae_contig19961:1918..2167Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19961 1919..2167 -
1691683127.2544765-CDS-L-elsbetiae_contig19961:1918..21671691683127.2544765-CDS-L-elsbetiae_contig19961:1918..2167Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19961 1919..2167 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19961.5983.1prot_L-elsbetiae_contig19961.5983.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19961 1064..2167 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19961.5983.1

>prot_L-elsbetiae_contig19961.5983.1 ID=prot_L-elsbetiae_contig19961.5983.1|Name=mRNA_L-elsbetiae_contig19961.5983.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=142bp
WQAGSGKIIRPSKEEMFFLPQRPYCTLGPLRDQITYPSSQVVGDVEEVGD
GSGGQVEGGVTEPVGAGGGSNSEDGELLSLLEKVDLGSLASMMGDGDSHA
GLDAVRDWSDLLSLGEQQRLAFARLLYNRPTLAILDESTSAL
back to top

mRNA from alignment at L-elsbetiae_contig19961:1064..2167-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19961.5983.1 ID=mRNA_L-elsbetiae_contig19961.5983.1|Name=mRNA_L-elsbetiae_contig19961.5983.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1104bp|location=Sequence derived from alignment at L-elsbetiae_contig19961:1064..2167- (Laminarionema elsbetiae ELsaHSoW15)
TGGCAAGCAGGGTCGGGCAAGATCATCCGACCGTCAAAGGAGGAGATGTT TTTCCTCCCGCAGAGGCCATATTGCACGCTCGGGCCCTTGAGAGACCAGA TAACATACCCATCGAGCCAGGTTGTTGGCGACGTTGAAGAGGTCGGGGAC GGCAGCGGGGGGCAGGTCGAGGGGGGGGTGACGGAGCCCGTTGGGGCAGG GGGGGGGTCGAACAGCGAAGACGGGGAGCTTCTCTCGCTCTTGGAAAAGG TTAGGAAGGGTGTCATCGGTGTTTGTTCCGTCATAATTTTTTTCTTATTG ATCCTCCCATTATTAGCATATTTGTCGTCTGCCCCACTGGCCCCCATCCT CCACTACGACTAGCTAGACGACCCAAGCGGGGTCACACAGGAGTGATATG TATGTATCATTGGTTCCATCGCTGATCGTTGTGGGTCTGGGTGGCGTGCG CTGCCAATCGCAAGCGTGTTTCGATTCTACGAGCGAAAGCTAGAAACAAC AACAACAACAACAACAAAGCACTGCTGTTGCATCGCTGCTCCACCACCAG CACTACCCCTGCCAGGTCTTGTTTTATACTTCGCACACTCCTGAAGTCCT GCTACCTGACAGTCCCGCTCTTGTTTCGTGTTTCGACTGCTATTGCCGCT CGGGGGTGGCGTGCTGTACGCTGTGATTCACTACTTGGAAGTAGTACATA CTTACTTTGAGAAAAATCGATGTAAATGTTTTTTTGGCCGAGCCCGGCGG GCGCGGGTTAAAGAATATTACGTTACTAAATGTGTCTACATCGACAGCAG AGTGCTCCGGGAGGCGTGTGCATTCACTGCCGACGCTCGTTGTACATGGC AAGGAAAATATCGTCTTATTTGTTGTTTTGTTTTAAGGTGTAGGTAAGTA ACTTTTACTTGTTGTTTTTCCTCACAGGTCGATCTCGGCAGCCTGGCTTC GATGATGGGTGACGGCGACTCCCACGCGGGGCTCGATGCCGTCCGGGACT GGTCCGACCTGCTGTCGCTCGGGGAGCAGCAGAGGCTCGCGTTCGCGCGG CTGCTGTACAACAGGCCCACCCTCGCCATCCTCGACGAGTCCACGTCCGC TCTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig19961:1064..2167-

>mRNA_L-elsbetiae_contig19961.5983.1 ID=mRNA_L-elsbetiae_contig19961.5983.1|Name=mRNA_L-elsbetiae_contig19961.5983.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=852bp|location=Sequence derived from alignment at L-elsbetiae_contig19961:1064..2167- (Laminarionema elsbetiae ELsaHSoW15)
TGGCAAGCAGGGTCGGGCAAGATCATCCGACCGTCAAAGGAGGAGATGTT
TTTCCTCCCGCAGAGGCCATATTGCACGCTCGGGCCCTTGAGAGACCAGA
TAACATACCCATCGAGCCAGGTTGTTGGCGACGTTGAAGAGGTCGGGGAC
GGCAGCGGGGGGCAGGTCGAGGGGGGGGTGACGGAGCCCGTTGGGGCAGG
GGGGGGGTCGAACAGCGAAGACGGGGAGCTTCTCTCGCTCTTGGAAAAGT
GGCAAGCAGGGTCGGGCAAGATCATCCGACCGTCAAAGGAGGAGATGTTT
TTCCTCCCGCAGAGGCCATATTGCACGCTCGGGCCCTTGAGAGACCAGAT
AACATACCCATCGAGCCAGGTTGTTGGCGACGTTGAAGAGGTCGGGGACG
GCAGCGGGGGGCAGGTCGAGGGGGGGGTGACGGAGCCCGTTGGGGCAGGG
GGGGGGTCGAACAGCGAAGACGGGGAGCTTCTCTCGCTCTTGGAAAAGGT
CGATCTCGGCAGCCTGGCTTCGATGATGGGTGACGGCGACTCCCACGCGG
GGCTCGATGCCGTCCGGGACTGGTCCGACCTGCTGTCGCTCGGGGAGCAG
CAGAGGCTCGCGTTCGCGCGGCTGCTGTACAACAGGCCCACCCTCGCCAT
CCTCGACGAGTCCACGTCCGCTCTGGTCGATCTCGGCAGCCTGGCTTCGA
TGATGGGTGACGGCGACTCCCACGCGGGGCTCGATGCCGTCCGGGACTGG
TCCGACCTGCTGTCGCTCGGGGAGCAGCAGAGGCTCGCGTTCGCGCGGCT
GCTGTACAACAGGCCCACCCTCGCCATCCTCGACGAGTCCACGTCCGCTC
TG
back to top