mRNA_L-elsbetiae_contig199.5957.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig199.5957.1 vs. uniprot
Match: A0A6H5JUL1_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUL1_9PHAE) HSP 1 Score: 977 bits (2525), Expect = 0.000e+0 Identity = 555/805 (68.94%), Postives = 620/805 (77.02%), Query Frame = 1 Query: 1 CTQTGVRNQCIYSPRLKSGRKKKVRIDGVLYEEGAYGGELALVANGGPRQQAVDPSAGRFSASGAVGLAGHVENFFLATYLRDFNRIVPLTTESSVTEGMLEVLSPAVSVSSMGLATANPIKQPESRRQAKLAVFWGVVAMGSRILGADDEATVRYLGLMRTALRECFDCNDKEVVQAYLLLSTVETMRGNEAAGKRYLDHAHTMHNGNAMGPEGKLLRDRSEQDLSLDLVFQIYDQPDGCVSGFNRSAAVGDWRRN------SSSXXXXXXXXXXXXXGEPSSAVDQMIAQAMAPPSDSQSSPLKALKYLSTACGLSSEVFDPTNKCVTVKQYLGEMDSALKGAHSLFVATDLGECVTGVMMVKIWGGVTVVMRSWGKLEDRNIGLAQVEEGVGYALTRPGLFTFPMWWHALHCAAVTLAHFGRTDIYMRLRATFNKHTFPGTEMPEISSYTPGSVCPQPGGSCSKLAYWLQVRGTMCGEPEWKPHFTKGRLSEASENAAYAAALDRGNSCPD--KANGAV----SQVLASSPNFSPPSESAMAMNGADLVNG-SPVREALDAGLHEIGAHFDDLSGLEDL--AGADLXXXXXXXPLGMGVEFDLSQLIQEPENAGNAGSAGANTHCAGAGVGVKAETDALCLEACQAGGAAEIAAAVGKGM-----------GMGGAAPMNTMQIPLGLVAGRGGXXXXXXXXXXXXXXXXAVTGGGELSRGPSFGISGPAAMGWGTGAAPAVTSSSGDVMSRQSSIDINTIMQMANSDELLKKIDGGTPDAIDNALAFGEGPAKEIFGVELS 2337 CT+TGV NQC+YSPRLKSGRKKK RIDGVLYEEG YGGELA GG R+ VDPSAGRFSASGAVGLAGHVENFFLATYLRDFNR+VPLTTESSVTEGMLEVLSPAVS S GLATANPIKQPE+RRQA+LAVFWGVVAMGSRILGA DE+TVRYLGLMR+ALRECFDCNDKEVVQAYLLLSTVETMRGNEAAGKRYLDHAHTMHNGNA+GPEGKLLRDRSEQD+SLDLVFQ+YDQPDG VSGFNRS AVGDWRRN S + G+P+SAVDQMIAQA++PPS+ QSSPLKALKYLST CGLSSEVFDPTNKCVTVKQYL EMDSALKGAHSLFVATDL EC+TGV++VKI+GGVT++MRSWG+LEDR+IGLAQVEEGVGYALTRPGLFTFPMWWHALHCAA+ LAHFGR D YMRLRATFNK TFPGTEMP I Y+P SVCPQ GG+CSKLAYWLQVRGTMC + EWKP F++ RLS+ASENAAYAAAL+R SC K +GA A +P P+ ++ +D+V G S +R AL+AGL EIG F+DL GL+ L +GADLXXXXXXX EFDLSQL + PE A + A+ GA ++ AA G G G GGAA +N+MQIP GLVAGR G + GGGE+SRGPSFGISGPAA+ G A A SSG +SRQSS+DINTIMQM SDE L+K +GGTPDAID+AL +GEGPAKE+FG++L+ Sbjct: 144 CTETGVPNQCVYSPRLKSGRKKKFRIDGVLYEEGTYGGELARANPGGVRRN-VDPSAGRFSASGAVGLAGHVENFFLATYLRDFNRLVPLTTESSVTEGMLEVLSPAVS--SRGLATANPIKQPETRRQARLAVFWGVVAMGSRILGAADESTVRYLGLMRSALRECFDCNDKEVVQAYLLLSTVETMRGNEAAGKRYLDHAHTMHNGNAIGPEGKLLRDRSEQDVSLDLVFQMYDQPDGAVSGFNRSGAVGDWRRNQNATKGSPTSPEQTHSGGGSDSGKPTSAVDQMIAQAVSPPSECQSSPLKALKYLSTVCGLSSEVFDPTNKCVTVKQYLAEMDSALKGAHSLFVATDLSECITGVVIVKIFGGVTMLMRSWGQLEDRDIGLAQVEEGVGYALTRPGLFTFPMWWHALHCAAICLAHFGRNDTYMRLRATFNKTTFPGTEMPSIEDYSPASVCPQLGGNCSKLAYWLQVRGTMCADLEWKPQFSRSRLSDASENAAYAAALERRYSCGKHKKRSGAAWCGERWGAAEAPKHPVPNPVDQ-VSASDIVEGGSQLRAALNAGLAEIGTPFNDLGGLDILEGSGADLXXXXXXXS-----EFDLSQL-ESPEQVVEASGEAEXXXXXXXXXXXXTGSPAV--------GATDVPAA-GSGXXXXXXXXPGXPGAGGAAAVNSMQIPAGLVAGRSGSSDVAGSRGAGAGAP-VIIGGGEISRGPSFGISGPAAVSSIFGPAGA---SSGGALSRQSSLDINTIMQMVTSDEQLRKNEGGTPDAIDHALEYGEGPAKEMFGIDLA 925
BLAST of mRNA_L-elsbetiae_contig199.5957.1 vs. uniprot
Match: A0A836CBP3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBP3_9STRA) HSP 1 Score: 226 bits (575), Expect = 4.550e-58 Identity = 148/441 (33.56%), Postives = 214/441 (48.53%), Query Frame = 1 Query: 157 VDPSAGRFSASGAVGLAGHVENFFLATYLRDFNRIVPLTTESSVTEGMLEVLSPAVSVSSMGLATANPIKQPESRRQAKLAVFWGVVAMGSRILGADDEATVRYLGLMRTALRECFDCNDKEVVQAYLLLSTVETMRGNEAAGKRYLDHAHTMHNGNAMGPEGKLLRDRSEQDLS-LDLVFQIY----------DQPDGCVSGFNRSAAVGDWRRNSSSXXXXXXXXXXXXXGEPSSAVDQMIAQAMAPPSDSQSSPLKALKYLSTACGLSSEVFDPTNKCVTVKQYLGEMDSALKGAHSLF-VATDLGECVTGVMMVKIWGGVTVVMRSWGKLEDRNI------------GLAQVEEGVGYALTRPGLFTFPMWWHALHCAAVTLAHFGRTDIYMRLRATFNKHTFPGTEMPEISSYTPGSVCPQPGGSCSKLAYWLQVR 1407 V P A F+AS A+GL GHVEN F+A Y+RD N +P+T+E +V GMLE L AN RR AKLAVFWGVVA+GSRILGA RY + ALR+CFD +D VVQAYLLL ++ETM GN +RY+ A T+H K ++++ + L L+ + Q++ D+ SG N + A +A +M+ + P+ AL+ ++ +V DP + C V +L +++A G + ++ L +CV V IW G+T+ M G+++ GL +V G+ A++RPGL TFP+WWH +HCAA+TL H G Y R +A F+ H +PGT++P ++ VC C + WL R Sbjct: 275 VHPLARPFTASPALGLVGHVENIFIAAYIRDLNNFIPMTSEGAVMSGMLET--------GKSLVPANAAPAASKRRSAKLAVFWGVVALGSRILGAPRADVERYRAQVTAALRDCFDEDDPMVVQAYLLLGSLETMLGNCPKARRYMHFAKTVH----ASLRAKSVQEQHQAQLEGLETLLQVFGARMCECDAVDEGPCTASGANTAVAA--------------------------AACSEMLQSIFMARTGQAVKPMDALRLTLGMPNITRKVLDPESPCPIVLAHLHHLENACDGVGVIINTSSVLTDCVAIVAPQMIWHGITLSMS--GRIQXXXXXXXXXXXXXXXAGLKEVAAGMELAMSRPGLMTFPLWWHCMHCAAITLQHHGLRADYDRFKAVFDNHCYPGTQLPPFDAFNLDHVCGA-DNLCRQYQAWLLRR 674
BLAST of mRNA_L-elsbetiae_contig199.5957.1 vs. uniprot
Match: A0A835YR83_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR83_9STRA) HSP 1 Score: 167 bits (424), Expect = 2.320e-38 Identity = 126/422 (29.86%), Postives = 187/422 (44.31%), Query Frame = 1 Query: 172 GRFSASGAVGLAGHVENFFLATYLRDFNRIVPLTTESSVTEGMLEVLSPAVSVSSMGLATANPIKQPESRRQAKLAVFWGVVAMGSRILGADDEATVRYLGLMRTALRECFDCNDKEVVQAYLLLSTVETMRGNEAAGKRYLDHAHTMHNGNAMGPEGKLLRDRS--EQDLSL-DLVFQIY-----DQPDGCVSGFNRSAAVGDWRRNSSSXXXXXXXXXXXXXGEPSSAVDQMIAQAMAPPSDSQSSPLKALKYLSTACGLSSEVFDPTNKCVTVKQYLGEMDSALKGAHSLFVATDLGECVTGVMMVKIWGGVTVVMRSWGKLEDRNIGLAQVEEGVGYALTRPGLFTFPMWWHALHCAAVTLAHFGRTDIYMRLRATFNKHTFPGTEMPEISSYTP--GSVCPQPGGSCSKLAYWLQVR 1407 G F A A GL G +EN+FLA+YL+D + PL ES V GM++ + D A AL CFD D +VV+AYLLL T+ +M GN + KRY + T+H G A G++ D S E + +L + Q Y D PD + + V QM A SP+ AL+ + G +S+ D + C V+ L ++ A G ++ + L +CV ++ G+T+VM+ G+L +G+ +E G+ A+TRPGL TF +WWH LHCAA+T+AH R D Y+RL+ +++HT PGT++P ++ Y GSVC P C + +WL+ R Sbjct: 772 GSFRAGPATGLVGRLENYFLASYLKDLHGFTPLACESIVVRGMMQAFA--------------------------------------------DRAAA--------ALGACFDEPDVQVVRAYLLLGTLHSMLGNASKAKRYAHFSQTLHAGLA----GQMREDSSWLESECALLQTLIQAYGPRLLDSPDAMRKPPDNPEGID---------------------------VPQMSLMAQR---GHVRSPINALRIMIGLQGFASKALDHRSTCAEVRHSLLLLEHAWDGVLAVITNSGLQDCVAVTAPQCLYHGITLVMQ--GRLA---MGVEHIERGINLAITRPGLVTFTIWWHCLHCAAITMAHLNRVDTYLRLKDVYDRHTHPGTQLPSLADYHADCGSVC-GPDQYCQQFRHWLERR 1101
BLAST of mRNA_L-elsbetiae_contig199.5957.1 vs. uniprot
Match: A0A835Z4T4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4T4_9STRA) HSP 1 Score: 104 bits (260), Expect = 2.970e-19 Identity = 95/377 (25.20%), Postives = 146/377 (38.73%), Query Frame = 1 Query: 388 AKLAVFWGVVAMGSRILGADDEATVRYLGLMRTALRECFDCNDKE---------------------------------------VVQAYLLLSTVETMRGNEAAGKRYLDHAHTMHNG-NAMGPEGKLLRDRSEQDLSLDLVFQIYDQPDGCVSGFNRSAAVGDWRRNSSSXXXXXXXXXXXXXGEPSSAVDQMIAQAMAPPSDSQSSPLKALKYLSTACGLSSEVFDPTNKCVTVKQYLGEMDSALKGAHSLFVATDLGECVTGVMMVKIWGGVTVVMRSWGKLEDRNIGLAQVEEGVGYALTRPGLFTFPMWWHALHCAAVTLAHFGRTDIYMRLRATFNKHTFPGTEMPEISSYTPG--SVCPQPGGSCSKLAY 1392 A AVFW V +GS + GA T RY ALR CFD D VV AYL L +E M G+ A +RY+ + T++ G A G G D +E + L+ + + + S V S P A+ M+ +P + V+Q + + A A + T L C+ + G T++M+ ++E+ GLA +E+G+ A+ +P L F +WWHA+HC + LAH GR Y+R +A ++ +TFPGT++P++ +Y S+C PG C +AY Sbjct: 29 ASAAVFWSTVGLGSFLCGAARAVTERYAAFAARALRACFDEPDTXXXXXXXXXXXXXXXXXXXXXKLAGAXXXXXXXXXXXXXXVVHAYLQLGLLEGMLGHYAKARRYVHFSQTLYAGLQAQGQPGSAW-DSNEGGMLSSLIASFGPR----ILDTSESEQVPPDNPESLDVPGMALAAKRGKVSRPFDALRIMLGVXX-----------XXXXXXXXXXXXXXXALEPASPTHVVQQNVQHLVDAWDAAGVIMTCTTLSGCIAARAPQLLLRGSTLLMQE--RVEE---GLADIEQGLALAVQQPNLIRFSLWWHAIHCGVIGLAHHGRIGAYVRTKAVYDAYTFPGTQLPDMPTYLADDHSIC-GPGHYC--IAY 381
BLAST of mRNA_L-elsbetiae_contig199.5957.1 vs. uniprot
Match: D7FTE0_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTE0_ECTSI) HSP 1 Score: 63.9 bits (154), Expect = 1.860e-6 Identity = 50/162 (30.86%), Postives = 78/162 (48.15%), Query Frame = 1 Query: 175 RFSASGAVGLAGHVENFFLATYLRDFNRIVPLTTESSVTEGMLEVLSPAV---SVSSMGLATANPIKQPESR---------RQAKL------AVFWGVVAMGSRILGADDEATVRYLGLMRTALRECFDCNDKEVVQAYLLLSTVETMRGNEAAGKRYLDHA 606 R S+S A GL G EN FL + F I+PLTTES+V M+EV+ + S G + + + E + R+ L + W +A+G+ + G E + Y+ L +L ECFD E +AYL++S + + G+E +RY+ A Sbjct: 166 RLSSSPATGLVGMPENGFLCDFFGCFG-ILPLTTESTVRNAMVEVMMRQCGGQAYSGTGGSGMEGLAEDEEKDWHGGGALARRHTLPDHPAKCMMWCAIALGALMRGISVEHVMGYVQLAWKSLTECFDGRSVEHARAYLIMSFLHRVIGDEDKNERYMSFA 326 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig199.5957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig199.5957.1 >prot_L-elsbetiae_contig199.5957.1 ID=prot_L-elsbetiae_contig199.5957.1|Name=mRNA_L-elsbetiae_contig199.5957.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=683bp MLEVLSPAVSVSSMGLATANPIKQPESRRQAKLAVFWGVVAMGSRILGADback to top mRNA from alignment at L-elsbetiae_contig199:2224..11086+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig199.5957.1 ID=mRNA_L-elsbetiae_contig199.5957.1|Name=mRNA_L-elsbetiae_contig199.5957.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8863bp|location=Sequence derived from alignment at L-elsbetiae_contig199:2224..11086+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig199:2224..11086+ >mRNA_L-elsbetiae_contig199.5957.1 ID=mRNA_L-elsbetiae_contig199.5957.1|Name=mRNA_L-elsbetiae_contig199.5957.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4098bp|location=Sequence derived from alignment at L-elsbetiae_contig199:2224..11086+ (Laminarionema elsbetiae ELsaHSoW15)back to top |