mRNA_L-elsbetiae_contig19619.5849.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19619.5849.1
Unique NamemRNA_L-elsbetiae_contig19619.5849.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19619.5849.1 vs. uniprot
Match: D8LSN9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSN9_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 2.000e-24
Identity = 56/80 (70.00%), Postives = 61/80 (76.25%), Query Frame = 1 
Query:    7 GLVLLRGLRPSVWEGEDMGTVLRIGASACAGAGKTLVVTTQVXXXXXXXXXXACEEGSKPP-VALLIEPMPELWEAGLLY 243
            GLV L G+RPSVWE  DMGTVLRI +SACAGAGKTLVVTT V          A E+G+ PP +ALLIEPMPELWEAGLLY
Sbjct:  240 GLVFLPGVRPSVWESGDMGTVLRIASSACAGAGKTLVVTTTVLGVGGTG---AAEDGTTPPPMALLIEPMPELWEAGLLY 316
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19619.5849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSN9_ECTSI2.000e-2470.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19619contigL-elsbetiae_contig19619:79..387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size252
Cds size252
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815813.9985538-CDS-L-elsbetiae_contig19619:78..2011622815813.9985538-CDS-L-elsbetiae_contig19619:78..201Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19619 79..201 +
1691683119.9946759-CDS-L-elsbetiae_contig19619:78..2011691683119.9946759-CDS-L-elsbetiae_contig19619:78..201Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19619 79..201 +
1622815814.0106723-CDS-L-elsbetiae_contig19619:258..3871622815814.0106723-CDS-L-elsbetiae_contig19619:258..387Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19619 259..387 +
1691683120.0067127-CDS-L-elsbetiae_contig19619:258..3871691683120.0067127-CDS-L-elsbetiae_contig19619:258..387Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19619 259..387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19619.5849.1prot_L-elsbetiae_contig19619.5849.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19619 79..387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19619.5849.1

>prot_L-elsbetiae_contig19619.5849.1 ID=prot_L-elsbetiae_contig19619.5849.1|Name=mRNA_L-elsbetiae_contig19619.5849.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
GGGLVLLRGLRPSVWEGEDMGTVLRIGASACAGAGKTLVVTTQVLGGGGG
AASGACEEGSKPPVALLIEPMPELWEAGLLYCR*
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mRNA from alignment at L-elsbetiae_contig19619:79..387+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19619.5849.1 ID=mRNA_L-elsbetiae_contig19619.5849.1|Name=mRNA_L-elsbetiae_contig19619.5849.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=309bp|location=Sequence derived from alignment at L-elsbetiae_contig19619:79..387+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGGCGGCCTCGTGCTCTTGCGAGGGTTGAGGCCGTCCGTCTGGGAGGG
GGAGGACATGGGAACCGTTCTGCGGATCGGGGCGAGCGCCTGCGCGGGGG
CGGGGAAGACGCTCGTCGTCACCGTGAGGAGCGTCGGGCAGCTCCATGAC
GCGGCGATGGCGGCCTTCGCGGCGTCCCAGACGCAGGTGTTGGGGGGAGG
AGGGGGGGCGGCGAGCGGGGCCTGCGAAGAAGGCAGCAAGCCGCCCGTGG
CCTTGCTGATTGAGCCCATGCCTGAGCTGTGGGAAGCTGGGTTGCTCTAT
TGTAGGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19619:79..387+

>mRNA_L-elsbetiae_contig19619.5849.1 ID=mRNA_L-elsbetiae_contig19619.5849.1|Name=mRNA_L-elsbetiae_contig19619.5849.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig19619:79..387+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGGCGGCCTCGTGCTCTTGCGAGGGTTGAGGCCGTCCGTCTGGGAGGG
GGAGGACATGGGAACCGTTCTGCGGATCGGGGCGAGCGCCTGCGCGGGGG
CGGGGAAGACGCTCGTCGTCACCGGCGGCGGCCTCGTGCTCTTGCGAGGG
TTGAGGCCGTCCGTCTGGGAGGGGGAGGACATGGGAACCGTTCTGCGGAT
CGGGGCGAGCGCCTGCGCGGGGGCGGGGAAGACGCTCGTCGTCACCACGC
AGGTGTTGGGGGGAGGAGGGGGGGCGGCGAGCGGGGCCTGCGAAGAAGGC
AGCAAGCCGCCCGTGGCCTTGCTGATTGAGCCCATGCCTGAGCTGTGGGA
AGCTGGGTTGCTCTATTGTAGGTAGACGCAGGTGTTGGGGGGAGGAGGGG
GGGCGGCGAGCGGGGCCTGCGAAGAAGGCAGCAAGCCGCCCGTGGCCTTG
CTGATTGAGCCCATGCCTGAGCTGTGGGAAGCTGGGTTGCTCTATTGTAG
GTAG
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