mRNA_L-elsbetiae_contig1957.5828.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1957.5828.1
Unique NamemRNA_L-elsbetiae_contig1957.5828.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1957.5828.1 vs. uniprot
Match: A0A6H5JZR7_9PHAE (ENTH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZR7_9PHAE)

HSP 1 Score: 323 bits (828), Expect = 8.030e-104
Identity = 160/175 (91.43%), Postives = 169/175 (96.57%), Query Frame = 2 
Query:  200 MDKLGQLSLDKLSLDKVKNLVGEVRDTIAPRNDTEKRVYEALSNKNWGASSTLLNDIARDTYDFEKYGIVLPLIWSSLQSPSREWRKVFKALSLLEHLVKNGAERVIEDARDNLHRVRMLADFNYYEGPVDKGSGVREMSKKVIELLKDNEMIREEREKSRKLRDKYVGLGGGSG 724
            MDKL QL+LDKLSLDKVKN+VGEVRDTIAPRNDTEKRVYEALSNKNWGASSTLLNDIARDTYDFEKYGIVLPLIW++LQSPSREWRKVFKAL LLEHL+KNGAERVIEDARDNLHRVRML+DFNYYEGP+DKGSGVRE SK+VIELLKDN+MIREEREK RKLRDKYVGLG G G
Sbjct:    1 MDKLSQLTLDKLSLDKVKNMVGEVRDTIAPRNDTEKRVYEALSNKNWGASSTLLNDIARDTYDFEKYGIVLPLIWTALQSPSREWRKVFKALCLLEHLIKNGAERVIEDARDNLHRVRMLSDFNYYEGPIDKGSGVREKSKQVIELLKDNDMIREEREKCRKLRDKYVGLGSGGG 175
[Close]
BLAST of mRNA_L-elsbetiae_contig1957.5828.1 vs. uniprot
Match: A0A835YGI8_9STRA (ENTH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGI8_9STRA)

HSP 1 Score: 227 bits (579), Expect = 9.350e-72
Identity = 104/158 (65.82%), Postives = 138/158 (87.34%), Query Frame = 2 
Query:  218 LSLDKLSLDKVKNLVGEVRDTIA-PRNDTEKRVYEALSNKNWGASSTLLNDIARDTYDFEKYGIVLPLIWSSLQSPSREWRKVFKALSLLEHLVKNGAERVIEDARDNLHRVRMLADFNYYEGPVDKGSGVREMSKKVIELLKDNEMIREEREKSRKL 688
            + LDKL++DK+KNL  +V++ +A  +NDTE++VY+ LSNKNWGASST+LNDIARD+YDF+KYG+++ ++W SL+SP REWRKVFKALSLLEHL+KNG ERV+EDARD +HR+  L+ FNYYEG  DKGSGVRE SK++IELLK N+ IREER++++K+
Sbjct:    3 IGLDKLTIDKLKNLAADVKNQVAVAKNDTERQVYDVLSNKNWGASSTILNDIARDSYDFDKYGMIMTIVWQSLESPPREWRKVFKALSLLEHLIKNGTERVVEDARDRMHRITTLSQFNYYEGHADKGSGVREKSKQLIELLKSNDTIREERKRAQKV 160
[Close]
BLAST of mRNA_L-elsbetiae_contig1957.5828.1 vs. uniprot
Match: A0A6U4DQX0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4DQX0_9STRA)

HSP 1 Score: 213 bits (543), Expect = 8.820e-66
Identity = 98/168 (58.33%), Postives = 135/168 (80.36%), Query Frame = 2 
Query:  236 SLDKVKNLVGEVRDTIAPRNDTEKRVYEALSNKNWGASSTLLNDIARDTYDFEKYGIVLPLIWSSLQSPSREWRKVFKALSLLEHLVKNGAERVIEDARDNLHRVRMLADFNYYEGPVDKGSGVREMSKKVIELLKDNEMIREEREKSRKLRDKYVGLG--GGSGAFS 733
            +LD++++ V EVR  +AP+N+TE+RVYEA+SNKNWGASSTLLN+IA D   +E Y +V+ +IW SL +  R WR++FK LSLLEHL+KNG ER++ED+RD++H++R L DFNYYEG  D+GSGVRE +K++++LL DN  IREER  +R+LRDK+VG+   G +G FS
Sbjct:    6 TLDRLRSAVDEVRAQVAPKNETERRVYEAISNKNWGASSTLLNEIAADVRHYEHYSMVMKIIWESLNAAGRSWRQIFKTLSLLEHLIKNGPERIVEDSRDHMHKIRTLTDFNYYEGTTDRGSGVREKAKQIMDLLSDNTAIREERANARRLRDKFVGISNSGRTGGFS 173
[Close]
BLAST of mRNA_L-elsbetiae_contig1957.5828.1 vs. uniprot
Match: A0A7S1TU31_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TU31_9STRA)

HSP 1 Score: 213 bits (543), Expect = 1.130e-63
Identity = 98/168 (58.33%), Postives = 135/168 (80.36%), Query Frame = 2 
Query:  236 SLDKVKNLVGEVRDTIAPRNDTEKRVYEALSNKNWGASSTLLNDIARDTYDFEKYGIVLPLIWSSLQSPSREWRKVFKALSLLEHLVKNGAERVIEDARDNLHRVRMLADFNYYEGPVDKGSGVREMSKKVIELLKDNEMIREEREKSRKLRDKYVGLG--GGSGAFS 733
            +LD++++ V EVR  +AP+N+TE+RVYEA+SNKNWGASSTLLN+IA D   +E Y +V+ +IW SL +  R WR++FK LSLLEHL+KNG ER++ED+RD++H++R L DFNYYEG  D+GSGVRE +K++++LL DN  IREER  +R+LRDK+VG+   G +G FS
Sbjct:    6 TLDRLRSAVDEVRAQVAPKNETERRVYEAISNKNWGASSTLLNEIAADVRHYEHYSMVMKIIWESLNAAGRSWRQIFKTLSLLEHLIKNGPERIVEDSRDHMHKIRTLTDFNYYEGTTDRGSGVREKAKQIMDLLSDNTAIREERANARRLRDKFVGISNSGRTGGFS 173
[Close]
BLAST of mRNA_L-elsbetiae_contig1957.5828.1 vs. uniprot
Match: A0A4D9CR71_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CR71_9STRA)

HSP 1 Score: 218 bits (555), Expect = 1.260e-62
Identity = 102/174 (58.62%), Postives = 143/174 (82.18%), Query Frame = 2 
Query:  194 TIMD-KLGQLSLDKLSLDKVKNLVGEVRDTIAPRNDTEKRVYEALSNKNWGASSTLLNDIARDTYDFEKYGIVLPLIWSSLQSPSREWRKVFKALSLLEHLVKNGAERVIEDARDNLHRVRMLADFNYYEGPVDKGSGVREMSKKVIELLKDNEMIREEREKSRKLRDKYVGLG 712
            T+ D  +G ++L+ ++L+ +KN+V E ++ I PR + EKR++EALSNKNWGASSTL+N IA DTYD+EKY  VL  IWS+L  P R WR +FKAL+LL+HLVKNGAERV+E+ RD+LH++R LADFNY+EG +D+GSG+RE +K ++EL+ +N  +REEREK+R+LR+K+VG+G
Sbjct:  159 TVRDPNIGNMNLN-INLESLKNMVDEAKNQIVPRTEMEKRMHEALSNKNWGASSTLMNQIASDTYDYEKYHQVLKAIWSALDLPGRSWRSIFKALTLLDHLVKNGAERVVEEVRDHLHKIRTLADFNYFEGSLDRGSGIREKAKMLMELVGENGRVREEREKARRLREKFVGIG 331
[Close]
BLAST of mRNA_L-elsbetiae_contig1957.5828.1 vs. uniprot
Match: A0A7S4DHG0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHG0_HETAK)

HSP 1 Score: 205 bits (522), Expect = 1.590e-62
Identity = 101/185 (54.59%), Postives = 139/185 (75.14%), Query Frame = 2 
Query:  200 MDKLGQLSLDKLSLDKVKNLVGEVRDTIAPRNDTEKRVYEALSNKNWGASSTLLNDIARDTYDFEKYGIVLPLIWSSLQSPSREWRKVFKALSLLEHLVKNGAERVIEDARDNLHRVRMLADFNYYEGPVDKGSGVREMSKKVIELLKDNEMIREEREKSRKLRDKYVGL--------GGGSGAF 730
            M+K     L  L+LD VKN+  +V   + P+NDTEKRV+EALSN+NWGASSTL+ +IA+DT+D+EKY  +  LIW +L SP R WR VFK LSLLE LVK+G+ERVIEDARD+ HR+R+L +F+Y +G VD+G GVR+ +++++ELL  NE IREER+K++ LR+K+ G+        GGG G++
Sbjct:    1 MNKFSIDKLKNLTLDDVKNIAQDVAINVKPKNDTEKRVHEALSNQNWGASSTLMQEIAKDTFDYEKYPQITKLIWQALDSPGRAWRSVFKGLSLLEFLVKHGSERVIEDARDHTHRLRLLLNFSYSDGGVDRGQGVRDKARQLVELLSSNETIREERQKAQALRNKFSGISNDSYSYGGGGGGSY 185
[Close]
BLAST of mRNA_L-elsbetiae_contig1957.5828.1 vs. uniprot
Match: A0A2D4BF42_PYTIN (Eukaryotic translation initiation factor 4 gamma 2 putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BF42_PYTIN)

HSP 1 Score: 211 bits (537), Expect = 6.010e-60
Identity = 98/169 (57.99%), Postives = 137/169 (81.07%), Query Frame = 2 
Query:  224 LDKLSLDKVKNLVGEVRDTIAPR--NDTEKRVYEALSNKNWGASSTLLNDIARDTYDFEKYGIVLPLIWSSLQSPSREWRKVFKALSLLEHLVKNGAERVIEDARDNLHRVRMLADFNYYEGPVDKGSGVREMSKKVIELLKDNEMIREEREKSRKLRDKYVGLGGGSG 724
            +DKL+LD++KN+V E +  +  +   D EK++ EALSNKNWGASSTLLNDIA+ TYD+E Y +V+  IW +L S +R+WR VFKAL+LL+HL+KNG ERV+E+ARD++ ++R L DF+Y++G  DKG+GVRE +K++++LL DN+ IREEREKSR++RDKYVG+  G G
Sbjct:    1 MDKLTLDRLKNVVDEAKSAVKAKLGTDVEKKLEEALSNKNWGASSTLLNDIAQLTYDYESYNVVMAKIWEALDSHARQWRTVFKALTLLDHLIKNGTERVVENARDHMFKLRSLTDFSYHDGSADKGAGVREKTKQILDLLNDNDRIREEREKSRRMRDKYVGISSGPG 169
[Close]
BLAST of mRNA_L-elsbetiae_contig1957.5828.1 vs. uniprot
Match: A0A8K1FFS9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FFS9_PYTOL)

HSP 1 Score: 210 bits (535), Expect = 1.150e-59
Identity = 97/175 (55.43%), Postives = 143/175 (81.71%), Query Frame = 2 
Query:  224 LDKLSLDKVKNLVGEVRDTIAPR--NDTEKRVYEALSNKNWGASSTLLNDIARDTYDFEKYGIVLPLIWSSLQSPSREWRKVFKALSLLEHLVKNGAERVIEDARDNLHRVRMLADFNYYEGPVDKGSGVREMSKKVIELLKDNEMIREEREKSRKLRDKYVGLG---GGSGAFS 733
            +DK +LD++KN+V E ++ +  +   D EK++ EALSNKNWGASSTLLN+IA+ TYD+E Y +++  IW ++ S +R+WR VFKAL+LL+HL+KNG ERV+E+ARD++ ++R L+DF+Y++G  DKG+GVRE +K+++++L +N++IREEREKSRK+RDKYVG+G   GG G FS
Sbjct:    1 MDKFTLDRLKNVVDEAKNAVKAKLGTDVEKKLEEALSNKNWGASSTLLNEIAQLTYDYESYNVIMTKIWEAMDSHARQWRTVFKALTLLDHLIKNGTERVVENARDHMFKLRALSDFSYHDGSADKGAGVREKTKQILDMLNNNDLIREEREKSRKMRDKYVGIGSVGGGMGGFS 175
[Close]
BLAST of mRNA_L-elsbetiae_contig1957.5828.1 vs. uniprot
Match: K3WLF9_GLOUD (ENTH domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLF9_GLOUD)

HSP 1 Score: 209 bits (533), Expect = 2.830e-59
Identity = 94/169 (55.62%), Postives = 139/169 (82.25%), Query Frame = 2 
Query:  224 LDKLSLDKVKNLVGEVRDTIAPR--NDTEKRVYEALSNKNWGASSTLLNDIARDTYDFEKYGIVLPLIWSSLQSPSREWRKVFKALSLLEHLVKNGAERVIEDARDNLHRVRMLADFNYYEGPVDKGSGVREMSKKVIELLKDNEMIREEREKSRKLRDKYVGLGGGSG 724
            +DK +LD+++N++ E + T+  +   D E+++ +ALSNKNWGASSTLLN+IA+ TYD+E Y +V+  IW +  S +R+WR VFKALSLL+HLVKNG ERV+E+ARD++ ++R L+DF+Y++G  DKG+GVRE +K++++LL DN++IREEREKSR+LRDK++G+G G G
Sbjct:    1 MDKFALDRLRNVIDEAKSTVKAKMGTDVERKMEDALSNKNWGASSTLLNEIAQLTYDYESYNVVMKKIWEATDSHARQWRTVFKALSLLDHLVKNGTERVVENARDHMFKLRQLSDFSYHDGSADKGAGVREKAKQIVDLLNDNDLIREEREKSRRLRDKFIGIGSGGG 169
[Close]
BLAST of mRNA_L-elsbetiae_contig1957.5828.1 vs. uniprot
Match: A0A0P1AWZ9_PLAHL (Enth domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWZ9_PLAHL)

HSP 1 Score: 196 bits (498), Expect = 7.500e-59
Identity = 89/167 (53.29%), Postives = 135/167 (80.84%), Query Frame = 2 
Query:  224 LDKLSLDKVKNLVGEVRDTIAPR--NDTEKRVYEALSNKNWGASSTLLNDIARDTYDFEKYGIVLPLIWSSLQSPSREWRKVFKALSLLEHLVKNGAERVIEDARDNLHRVRMLADFNYYEGPVDKGSGVREMSKKVIELLKDNEMIREEREKSRKLRDKYVGLGGG 718
            +D+ +LDK+KN++ + +  +  +   D E+++ EALSNKNWGASSTLLNDIA+ TYDFE YG+++  IW +L +  R+WR V+KALSLL+HL+KNG ERVIE+ARD++ ++R L+ F+Y++G VD+G+GVR+ +K+++++L DN +IR EREK+ +LR+KYVG+G G
Sbjct:    1 MDRFALDKLKNVMDDAKSAVKAKMGTDVERKMEEALSNKNWGASSTLLNDIAQLTYDFEAYGLIMRKIWDALDAEGRQWRTVYKALSLLDHLIKNGTERVIENARDHMFKLRHLSGFSYHDGSVDRGNGVRDKAKQLVDILNDNNVIRTEREKAGRLRNKYVGIGSG 167
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1957.5828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZR7_9PHAE8.030e-10491.43ENTH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835YGI8_9STRA9.350e-7265.82ENTH domain-containing protein n=1 Tax=Tribonema m... [more]
A0A6U4DQX0_9STRA8.820e-6658.33Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S1TU31_9STRA1.130e-6358.33Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A4D9CR71_9STRA1.260e-6258.62Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S4DHG0_HETAK1.590e-6254.59Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2D4BF42_PYTIN6.010e-6057.99Eukaryotic translation initiation factor 4 gamma 2... [more]
A0A8K1FFS9_PYTOL1.150e-5955.43Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WLF9_GLOUD2.830e-5955.62ENTH domain-containing protein n=1 Tax=Globisporan... [more]
A0A0P1AWZ9_PLAHL7.500e-5953.29Enth domain-containing protein n=1 Tax=Plasmopara ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1957contigL-elsbetiae_contig1957:7779..15428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score213.0
Seed ortholog evalue1.4e-52
Seed eggNOG ortholog115417.EPrPW00000017900
Preferred nameENT3
KEGG koko:K12471
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0000147,GO:0002020,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0005856,GO:0005884,GO:0005886,GO:0005938,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006897,GO:0006996,GO:0007010,GO:0007015,GO:0007034,GO:0008104,GO:0008150,GO:0008289,GO:0009579,GO:0009987,GO:0012505,GO:0012506,GO:0015031,GO:0015629,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016197,GO:0016482,GO:0019899,GO:0022607,GO:0030029,GO:0030036,GO:0030117,GO:0030118,GO:0030120,GO:0030125,GO:0030135,GO:0030136,GO:0030276,GO:0030479,GO:0030659,GO:0030662,GO:0030665,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0031090,GO:0031410,GO:0031982,GO:0032266,GO:0032509,GO:0032511,GO:0032991,GO:0033036,GO:0033365,GO:0034498,GO:0034613,GO:0035091,GO:0042147,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044396,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061645,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0080025,GO:0097435,GO:0097708,GO:0098588,GO:0098657,GO:0098796,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:1901981,GO:1902936
EggNOG free text desc.Source PGD
EggNOG OGs1MGDE@121069,KOG2056@1,KOG2056@2759
Ec32 ortholog descriptionENTH domain protein
Ec32 orthologEc-04_003620.1
COG Functional cat.F
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Ec32 ortholog descriptionENTH/VHS
Ec32 orthologEc-04_003610.1
Exons5
Model size881
Cds size681
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1957.5828.1prot_L-elsbetiae_contig1957.5828.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1957 7978..15428 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815811.8904862-UTR-L-elsbetiae_contig1957:7778..79771622815811.8904862-UTR-L-elsbetiae_contig1957:7778..7977Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1957 7779..7977 +
1691683118.461861-UTR-L-elsbetiae_contig1957:7778..79771691683118.461861-UTR-L-elsbetiae_contig1957:7778..7977Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1957 7779..7977 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815811.9005122-CDS-L-elsbetiae_contig1957:7977..80481622815811.9005122-CDS-L-elsbetiae_contig1957:7977..8048Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1957 7978..8048 +
1691683118.4760244-CDS-L-elsbetiae_contig1957:7977..80481691683118.4760244-CDS-L-elsbetiae_contig1957:7977..8048Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1957 7978..8048 +
1622815811.913634-CDS-L-elsbetiae_contig1957:12275..123951622815811.913634-CDS-L-elsbetiae_contig1957:12275..12395Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1957 12276..12395 +
1691683118.4873388-CDS-L-elsbetiae_contig1957:12275..123951691683118.4873388-CDS-L-elsbetiae_contig1957:12275..12395Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1957 12276..12395 +
1622815811.9297602-CDS-L-elsbetiae_contig1957:13397..134761622815811.9297602-CDS-L-elsbetiae_contig1957:13397..13476Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1957 13398..13476 +
1691683118.502005-CDS-L-elsbetiae_contig1957:13397..134761691683118.502005-CDS-L-elsbetiae_contig1957:13397..13476Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1957 13398..13476 +
1622815811.9407394-CDS-L-elsbetiae_contig1957:14095..142311622815811.9407394-CDS-L-elsbetiae_contig1957:14095..14231Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1957 14096..14231 +
1691683118.5109181-CDS-L-elsbetiae_contig1957:14095..142311691683118.5109181-CDS-L-elsbetiae_contig1957:14095..14231Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1957 14096..14231 +
1622815811.9507134-CDS-L-elsbetiae_contig1957:15153..154281622815811.9507134-CDS-L-elsbetiae_contig1957:15153..15428Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1957 15154..15428 +
1691683118.522141-CDS-L-elsbetiae_contig1957:15153..154281691683118.522141-CDS-L-elsbetiae_contig1957:15153..15428Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1957 15154..15428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1957.5828.1

>prot_L-elsbetiae_contig1957.5828.1 ID=prot_L-elsbetiae_contig1957.5828.1|Name=mRNA_L-elsbetiae_contig1957.5828.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=227bp
MDKLGQLSLDKLSLDKVKNLVGEVRDTIAPRNDTEKRVYEALSNKNWGAS
STLLNDIARDTYDFEKYGIVLPLIWSSLQSPSREWRKVFKALSLLEHLVK
NGAERVIEDARDNLHRVRMLADFNYYEGPVDKGSGVREMSKKVIELLKDN
EMIREEREKSRKLRDKYVGLGGGSGAFSGGGGGGGYSGGGGGYSGGGGGG
YSGGGGGGYSGGGGGYSGGGGASSRYG
back to top

mRNA from alignment at L-elsbetiae_contig1957:7779..15428+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1957.5828.1 ID=mRNA_L-elsbetiae_contig1957.5828.1|Name=mRNA_L-elsbetiae_contig1957.5828.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7650bp|location=Sequence derived from alignment at L-elsbetiae_contig1957:7779..15428+ (Laminarionema elsbetiae ELsaHSoW15)
GACACGCAGAGAGGGGACAATCGCTCGACAGGCGCACGCGCTTCCGTTGC
AAAGGGCTGAGATTATTTCGCTGAAGCGAAGCAGTGCTTGCGCGAGACTG
CATAGCGGGGGTACGTCGCAGGGTTTATCTCTCCAGGAAGTTCTTTGAGA
GCGCACACGTCGGAACAGGCGAACCGGCGAACCTCACCTCCTAACCATCA
TGGACAAGCTAGGGCAGCTTTCGCTGGACAAGCTGTCTCTGGACAAGGTC
AAGAACCTTGTCGGCGAAGTGTGAGTGCCCGTGTTATTGCTGCTTTTACT
CGGCTGATGGTCTCGAAAATGAAATGGAATTCGGCCGGCTCGTGTGTGAT
GGGTTCCATCCAAAGCTCACCCCCCTCTGTTTTACATGCATATGATACAT
GGACTACATAGATACCCAGGTGCATCAATTATCTCCGCCTTCGTTGTGCG
AGGAATCCGTTGCACCGCCCCACGGGAGGCATCACTTGCCACAGAAGGCA
TGGAAGAGACTCTGCCGCGCAATGGGAAAGGCGGGGGTGGAAGCGGTTCT
ATTTGTTGCCCCGATTTTGGTGGGTTGTTCCGCGTGTTGCCCGCACGCCT
ACAATACACAGCTACACATATGGTACCTGTACGCTAGTACGCTAGTACGC
ACGCTTCACACATAGGGTTACGCCCGTGTGGGCGTTCGGCGCGAAGGCGG
AAGACAGCGAATCGCCAATGGTTCTTGTGGCTTGGTGTGTTTGCAAGTTG
TTGCACTCGCGGAAGCACTGCTATCGGGCAAGAATTGTCGAAGGCGTGTT
GCCTGCTGCCGACGCAGTGGTGTTGGAACTCGGCTTTCTTTCAAGGGGGC
GCATACGGGATTGGGGGTTTTGGGAGGGGCTTCCCGGAACGTAAAAAAAC
ACAGATCTTCAGTGTAGGCAGATACGGAGAGGTCCAAAGCTCAGCGTGGA
GAAAGTCATCCAAGCCAGGAGTCAGAGGATATGTGGATAAGGTTTGGCTG
CACAGTAATTTAGCACAAAAAATTAGGCGTCAATTCTTGCAGGGCACTAC
TGACTCTCAGCATCGCTTGACATTCGTACTGGACTGGAAGAGCTCGGACG
AGAGAGAGAGCCAGTCCGCCGATCCACAGCACAATTTTGGGTAGTTTGGC
GGCAGAGTCAGATAGCGTCCATCCACGAGGAAACGATACGTACACATCGG
AAAGTTACGGTCCCAGGTGTGTAAAACACCTGCCAATACCGACAGCCGTC
TTGTAGGGCACTAACTTACAGCTGCTGCTGTCTACTGGTGCTTGCCTCGC
CGAGCCCCTCCGTGCGTGTTCGAAGGAAGCTCTGATTTGACGCTCACAGA
GCGATTCATGGTCTGAAACCCGCAACGGCACTAGTCATGAGTAGTGGATA
TCCTCGCCTCTGGTTTGTTTCGTCTGGGATGGTGACTGTGAGCTACAAGG
GCTGGCGCGCCGGTGCGAGCGTGTGCCTCGACAGGGCGGGGCATTTGGTA
GGGGGTCTTTTTTTTGCGTGTTTTCGTCTGCAGGGCCACTCCAGCAGTTT
GTTGACGCCGTAAATTGTTCGTACTCCACCACTAGAGCATCGATTCGCTT
GGTTCTTCTTGCTCAACATTCGACAGGTATCAGTACAAGTCTGAGCTTGC
TGCGTTGCAAAATCTGTATTCGGCTGAGAGCACTTATCAAGAAAGAGCTC
ATTTCCGCGCCTCCTTGAAAACGATTCCGAATATCACTGAAACATCAAAA
GCAGTACATATATTTATTCTCACCCCCCCCCCCCCGTCTTTATTCGAAAC
ATCGTCGATACTTCTGTGCACGTTATCTGTTCTCTCCCGCAGGCAGCATC
GTCTTGCTATTTTAGAGGGGGGGGGGCTAGTTTAATTCATGCGTATCATA
TGTACAAGTATGCTAACGAGTTTGGGGTCGAAATAGTGAAATAGATAACT
TTGGCAGAGCTCTTCTGCATGGCCCGCTCTTTAGCAGCTCTTCTTGTGTA
CCTTATGTCGGCTACCATACATACCACGGTATCATGTTTACCAAACATGC
TTTCCAGGAAAGGGGAAAGAGACGCGCACGATCGTCTCCCTCTGTGTGTG
CGACCCTCTACGATGGACCGTCTGTGGACCTCATACGTCTCTTTTCTGCT
CGTGGGGTTAGTCGGGGGGCTTTCCCAACACAAGAAATAAATGCACAACA
TGCAAGATAGCCATCCCGCAGTAAAAAATTGCGCGAACAAAAAATGGCGG
CCGAAAGGAAAGGAACACACGCACACACGCAGCAGTTGGCAGTTGGCGAA
GGACTGCACTACGATCACCTCCTCTTTTTGGAGGCGACATGCCCCACCCA
CCCGGCACGAATCATTGAGCGAGCAAGCCTCTTCGCGGGTTTAACCCTAT
AAAAGCCATTTACCACAGCAGCAGCAGCAGCAGCAGTGTGAGATTCTAGC
ACGCTCTCTTTTTTTTTTGGGAAAACGACGCAACAGGGTATATACCCTGG
TAGAACCACGGCATAGCTGGGTAAATACCCCTTTCCACAGACATTACACG
CGCATTGCTGATTGGCCAGCGCCACCGTTGACCCGGTTCTGGCGCCGTTC
GCCCATGGGTATACCCTGCTGCGTCTTTCTGTGTCCCAAATTGTACCCTG
CTGCTCCCGACCTGTACCCTGTTCAGACGGGAAATTGCCCCGCACTAAGA
CTCTTCTGCCCACTGTACGGCACATCAAACCACAGCCATGGCACAACACC
CCGCGTTTGATGTTACCAACGGACAAACATATGGGATAACCGAAGAAGTC
GGCGGCGCACAATACGGCGTAACAAACCACAACCATGGCATAAACACACA
CATATGGGATATCCCAGGTCGAGTCGGCGCACAAACATAGCCATCGCAAA
ACACCCGGCGTTATTTACACACACATACGATGTACTTACTGTATGGGATA
TGTATGTATGGGATATCCCAAGTCGGGCAGAACCCGGCGTAACAAACCAC
AGCCAGCCCATGGCAATACGCAAAGGACACCGGTGACACACGCGTCAGCA
TCCACTTCACACCCACACACACACACACACAAACCACACACTCCGGCGCC
CATGGAAGGAGGCGTTACCTACCATCTACCTGCCATTTAACTAGGCTACA
ACCACCTTGTTTTTCAAAACCACAAGGCCCATGGGAGAGAGCTGATGAAG
TGTGGCTGTGGCGTTGGATGCTGACGCGTCGGCTCTTTAACACGGGATGT
TTTGCGATGGCTGTGTCTATGCGCCGACTCGACCTGGGATATCCCATATG
TATGTAGGTGTATGTTGTCTTCACATTAAAAACCGTTCCGATCTCTCCAT
CCAGTACCTCTCAATGTCCGTACTAATCCAACACTTGATGCGGTCAATTC
CCGTGGTCACAGGCTAACTTATACCTAAGAAAAGGTACACGAAAAATAAA
ATGGACCCGAAGGGCCAGCAAAGCAATACTACGAAGTAATATATAACAGA
TATCGAGTCTGGAGCCCTTCGCTCCCCTCTACACGCTATGTGAGGTAAAA
ACAAAACTGGAACAACCAACACCACCACTATCTTGGTACCCCAACATGTG
TGTGTTTATGCCATGGTTGTGGTTTGTTACGCCGTGTTGTGCGCCGCCAA
CTTCTTCGGTTATCCCATATGTTTGTCCGTTGGTAACATCAAACGCGGGG
TGTTGTGCCATGGCTGTGGTTTGATGTGCCGTACAGTGGGCAGAAGAGTC
TTAGTGCAGGGCAATTTCCCGTCTGAACAGGGTACAGATCGGGAACAGCA
GGGTACAATTTGGGACAAAGAAAGACGCAGCAGGGTATACCCATGGGCGA
ACGGCGCCAGAACCGGGTCAATGGTGGCGCTGGCCAATCAGCAATGCGCG
TGTAAATGTCTGTGGAAAGGGGTACCCGGCTATGCCGTGGTTCTACCAGG
GTATATACCCTGTTGCGTCGTTTTCCCTTTTTTTGTGTTGTGTGTGGGTT
ACATACATGAGCGCCTGCCTCCACATCATTAGCGCGATTTGTATCATACG
ATGTAGGTCTGTGGGCTGGCTAATTAGATACGTCGAGGGAGGTCTGCATG
CGAGTCGCGGCTGTGTCGTATGGTGTAGCCTCTTCTCGCCACAGCCGAAA
CAAGAGTAACAACAAAGTGTTCGGTTATGTTCGTGGTTGAGCTTCAGAGG
CCAGAGGATGTTGTTAACCGCATGTATTAGCTCGTAGAGGAGACATGAGA
GAGAGATGGGAAGGAGAGGAGAGTGAGCCCAAAACGCTCGAGAAAGGGGG
CTCTGCACTCACACCCAAAAGGCTCTCAATGCATACCGTCAAGGTTCTTC
CTATCTGCGTCATACGAAACGCCAGAGTAACAACAACAGCACCAGCACCA
GTAGGCACAAAAGCGCCCAAAATTACAACCAACAGACCGGACACAACGTA
CTAACATATACTTCGTATGTAACATTGGCATCTGTAACATTTGACAGGCG
GGACACCATTGCCCCGCGCAACGACACGGAGAAGCGCGTGTACGAGGCCC
TCTCGAACAAAAACTGGGGTGCTTCGAGTACCCTGCTCAACGACATCGCC
AGGGACACCTACGACTTGTGAGACACAAACACGCGCGCGAGAACCGCGTG
ACACGAATCCCCATCGCCATAAAATACGTGACTGTGTTGTGCAGACACAT
GCCATCTTCCGTAGTTGATGGTCCGGGTGGTGGCGGTATTCACCCAATGC
CGGGGGCGGCTAGTTTCCTTCCGCGATGACTAGGCAAAGGAGAGAGAAGT
CCACGCGCGAGAGTGCCGACAATGGGCGGAGCAACTAACTCGGGTCCCCT
TGTCGGCCCAACGGGTCGATGAGATATCCTTTCTAAGATCCTATCCGTAC
TGCTACTGTATTACTTTGTATGTGCACCTGGTTCTCATACCTTACACCTG
TCGTCCACAATTACATTTATTCTTTAGTGTGTGTGTGTGTGTTGATCGCT
TGCCTCTCCCTTCGCGTCAAGACGCGTGTACACAGGCAGGCATTGCGGCT
CACACGAAGTAGGAGTGCATGCACAGTTTCTCGTACGCGGACATACATGT
GTACAGTTGGCTGGGAATATTTTGATATTTTCGTCTTTGGGTCTCGGCGT
CGAAGCTATGTACCCACAAGAGCAGAAGTCGCCGGTGCCCCTGCGCCCTT
TCTCTCTCCCCCCCACCCCCCCCCCACCCCCCGCCCCCCGCCCCCCACAA
AACGTTGAGGGCACTGGGTGCAAAACTTCTGTTCGTTGAAGAACGCTTCC
TTTCTTCGCGTTGGCTATGTCCTATGTAGCTTAATACTTACCGTAGGTGA
CATAAGATAAGACACCCCCTTGACCGATTTTCAAAGCTCAAGTACTCAAC
AGCAAGCAGAGCGTCAGTCCCCAAAAGGACGGCGTTGGAAAGGTCTCGTC
GAGAGCTGTCCGAAAATGTGGCGTTTATGGTTAGAATCGTACTCGTTGCG
GAGTAACCAAGCTTTCAAAATCGGTCCAGGGGGTGTCTTATCTTATGTCA
CCTACGGTAATACCCCCCCCGCGCCTTGGCCGCCCCGCTGCTGTCCCCTG
CCCTGCCTTAACCCCTCAGCGAGAAGTATGGCATCGTGCTGCCGCTCATC
TGGAGCTCCCTGCAGAGCCCCAGCCGCGAGTGGAGGAAAGTTTTCAAGGT
AAATCGTGTGTGCATGCATTATATGCGTGTAGGCAGAGCTGTGTACGTTG
GTGTGACAGGCGTACATAAGACCGCCTACGCGCAGAAAATCGTCAGATTC
AGGTTCATATGTCAAATAGCAATAGAGTGAGGGGGTTCCGTAACCCAACC
CCAACCCTAACCACGACCCCCCACCCCCCATTCCTCCGATTCCATACTTT
GTCCCATATGTTTTGCTGACTCAAAACCTGCGTAGACTGCCGCGTAAATA
TACGGATGTACGAGATGCCGGCGTTGTGTGCGGCCACGCGCACCTTCTGT
CTCTCTGTGTGTGCGTGCGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGT
GTGTGTGTTTCGTCCTACCTAGCGGTGCCCCTTCTCCCTTCTCCCTCCCC
CCCCCCCCCTCTTGTCCCCAGCAGGTGGGCCACTTTTTCGGGCGGTTCTT
GTCACACGTGTAGCGTATAAGTAACGAAGTGGTGTAGGTGTGCAGTATTT
GGGACACAAAGCGCGCACACGGGGCGCCGCACGTGCGTTCGTGTAGTTTA
CTAAGATTGTAGCTACGCTCGCTAATTTTGTGGCTTGCTTTTCTTCAACC
CCGTGTCGGCGAGACAGGCGCTATCTCTCCTGGAACACCTCGTCAAGAAC
GGCGCGGAGCGTGTTATCGAGGACGCCCGCGACAACCTTCACCGCGTGCG
CATGCTAGCAGACTTCAACTATTACGAGGGGCCCGTAGATAAGGGCAGCG
GAGGTACGTGTTTTGTTTTTTGCCACTCCCCACCCCACCCCACCCCTCTT
TGCTTTCTTCCTTCCCCCCTTCTTTCTGCGAGAAATAATTTTTCGTGTTT
CTTTTTCTGCTTTGTGTGTGTGTTTGTGCTATCGTGCGCAAGGCGTTTCA
ATACCAGGTTCGGTCATTCCGTTTGCTGTCGTTGTTAAAAAGCGGTCCGT
GTGTATGTTGTTGTCTTTGGTGGCATGTTCAGGTTCAAGTCAGCCGCAAC
CACTGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGT
GCGTGTGCGTGTGTGTGCGTGTGTGTGCGTGTGTGTGCGTGTGCCTGTGT
GTCTTTGTGTGTCTGTGTGCGTGCGTGCGTGCGTTTGTGTGTGTGTCTGT
GCGTGTATGTAGTGTGTGCATGGATTTTGCTTTATGCAGGGGAGATGTTG
AACTCTCCTGATATTTTAGGTTTGTTTTTCTGTTCGTCCGCCAAATATTA
CGCCACTGGATGGAATACCGTTTGAACCCCATATCGAGTCCTCGATCTAG
TGTAGGTTATGTTCCATCTTTGATTCATTGTTTATTAAAAAAAAAAAATG
TCCATCGCTCGGCACCGCACTTTGACTCTAGCAGCGAGCCGCCCCCGCGT
GTGGTGGCATCGTATCACAGCACCGCCGTGGAGCAGCGTAGTTTTGCGAT
CGGCGCCCTGTTTCACCTCGACTCACCCGCTCCTGCTATGTATATACAAG
CTCTCGTTTCGGGCTCGGTGTAATACAGAAATCGTGCTGCCTCCGCGCCC
ACCCTTCTGCCCGTCGCCTTCCCTGTGTGGTGCCTCCCGTCTTGACCCCA
CTCTCCGACGCCGCCCGCATCCGTGTGTTTCGTTCTCGTTTTTGTTGTCT
TTCTCCTGGCTGCTGACTGCCGTAGTTCGCGAGATGTCCAAGAAAGTAAT
CGAGCTGCTGAAGGACAACGAGATGATCCGCGAAGAGCGCGAGAAGTCTC
GCAAGCTCCGGGACAAGTACGTCGGGCTCGGCGGCGGCAGCGGCGCCTTT
AGTGGCGGCGGCGGGGGCGGAGGGTACAGCGGCGGCGGCGGTGGTTACAG
CGGCGGCGGTGGCGGTGGATACAGCGGCGGCGGCGGTGGTGGTTACAGCG
GGGGCGGCGGTGGCTACAGCGGAGGAGGAGGCGCTAGCTCTCGATATGGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1957:7779..15428+

>mRNA_L-elsbetiae_contig1957.5828.1 ID=mRNA_L-elsbetiae_contig1957.5828.1|Name=mRNA_L-elsbetiae_contig1957.5828.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1362bp|location=Sequence derived from alignment at L-elsbetiae_contig1957:7779..15428+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACAAGCTAGGGCAGCTTTCGCTGGACAAGCTGTCTCTGGACAAGGT
CAAGAACCTTGTCGGCGAAGTATGGACAAGCTAGGGCAGCTTTCGCTGGA
CAAGCTGTCTCTGGACAAGGTCAAGAACCTTGTCGGCGAAGTGCGGGACA
CCATTGCCCCGCGCAACGACACGGAGAAGCGCGTGTACGAGGCCCTCTCG
AACAAAAACTGGGGTGCTTCGAGTACCCTGCTCAACGACATCGCCAGGGA
CACCTACGACTTGCGGGACACCATTGCCCCGCGCAACGACACGGAGAAGC
GCGTGTACGAGGCCCTCTCGAACAAAAACTGGGGTGCTTCGAGTACCCTG
CTCAACGACATCGCCAGGGACACCTACGACTTCGAGAAGTATGGCATCGT
GCTGCCGCTCATCTGGAGCTCCCTGCAGAGCCCCAGCCGCGAGTGGAGGA
AAGTTTTCAAGCGAGAAGTATGGCATCGTGCTGCCGCTCATCTGGAGCTC
CCTGCAGAGCCCCAGCCGCGAGTGGAGGAAAGTTTTCAAGGCGCTATCTC
TCCTGGAACACCTCGTCAAGAACGGCGCGGAGCGTGTTATCGAGGACGCC
CGCGACAACCTTCACCGCGTGCGCATGCTAGCAGACTTCAACTATTACGA
GGGGCCCGTAGATAAGGGCAGCGGAGGCGCTATCTCTCCTGGAACACCTC
GTCAAGAACGGCGCGGAGCGTGTTATCGAGGACGCCCGCGACAACCTTCA
CCGCGTGCGCATGCTAGCAGACTTCAACTATTACGAGGGGCCCGTAGATA
AGGGCAGCGGAGTTCGCGAGATGTCCAAGAAAGTAATCGAGCTGCTGAAG
GACAACGAGATGATCCGCGAAGAGCGCGAGAAGTCTCGCAAGCTCCGGGA
CAAGTACGTCGGGCTCGGCGGCGGCAGCGGCGCCTTTAGTGGCGGCGGCG
GGGGCGGAGGGTACAGCGGCGGCGGCGGTGGTTACAGCGGCGGCGGTGGC
GGTGGATACAGCGGCGGCGGCGGTGGTGGTTACAGCGGGGGCGGCGGTGG
CTACAGCGGAGGAGGAGGCGCTAGCTCTCGATATGGCTTCGCGAGATGTC
CAAGAAAGTAATCGAGCTGCTGAAGGACAACGAGATGATCCGCGAAGAGC
GCGAGAAGTCTCGCAAGCTCCGGGACAAGTACGTCGGGCTCGGCGGCGGC
AGCGGCGCCTTTAGTGGCGGCGGCGGGGGCGGAGGGTACAGCGGCGGCGG
CGGTGGTTACAGCGGCGGCGGTGGCGGTGGATACAGCGGCGGCGGCGGTG
GTGGTTACAGCGGGGGCGGCGGTGGCTACAGCGGAGGAGGAGGCGCTAGC
TCTCGATATGGC
back to top