mRNA_L-elsbetiae_contig1945.5775.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1945.5775.1 vs. uniprot
Match: A0A6H5JSI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI9_9PHAE) HSP 1 Score: 221 bits (563), Expect = 5.350e-66 Identity = 128/275 (46.55%), Postives = 171/275 (62.18%), Query Frame = 2 Query: 8 TKCGVTVRLGGEELRVGTSRFLSQGTFLAYKSLMAVFFMSWAIYWREAGASIVLAKLTHQTWYVAMVYFFVSSASAYLCWRAIGKGSAGGAEAALEDEEGGGDLASMGGTKTNNGCGSPVPLALRRLQLVVWNITCVVSLVVVALFWFADYNGGAITSVDILAHAVIAPIMLIDQFLVADEFKLRHVIISQTFGVIYILFNIVWYYVGWEE-KVLYEVLDWDNKPLVAVIYGAVSILVLSPLFSLLHLFVCRRREML-HSRLREKLVAAQHIEIL 826 T+ G TV L E R+GTSRFL QG F+ YK +AV+F+ WAI+WR LTH TWY YF VS+ SA+LCWRAI A G + D + D + G PVP ALR LQL +W+ C+VSL+VV++FW A Y+G +T+VD AH +A IML+DQFLVADEFKLR+V+ Q FGVIYI FN+ WYY+ ++ +++Y +LDW++ L A IY +ILV +PLF L+H + R RE + H+RL AA + + Sbjct: 3 TRHGGTVPLDDETPRIGTSRFLPQGMFVLYKLGLAVYFLYWAIFWRAVKDYNTGRFLTHWTWYATTTYFVVSALSAFLCWRAIAVTVASGP---VRDGDPAFDAPTSSRPSDRTGSPQPVPAALRHLQLALWSTACIVSLIVVSIFWGALYDGDKLTTVDEQAHVFVACIMLLDQFLVADEFKLRYVLFPQAFGVIYIFFNVGWYYLAPDDDRLIYIILDWEDNTLGACIYAFGAILVGAPLFGLVHFGIFRLRERVYHNRLARSSKAAAEAQAI 274
BLAST of mRNA_L-elsbetiae_contig1945.5775.1 vs. uniprot
Match: D7G733_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G733_ECTSI) HSP 1 Score: 132 bits (331), Expect = 4.150e-31 Identity = 89/275 (32.36%), Postives = 142/275 (51.64%), Query Frame = 2 Query: 17 GVTVRLGG---EELRVGTSRFLSQGTFLAYKSLMAVFFMSWAIYW---REAGASIVLAKLTHQTWYVAMVYFFVSSASAYLCWRAIGKGSAGGAEAALEDEEGGGDLASMGGTKTNNGCGSPVPLALRRLQLVVWNITCVVSLVVVALFWFADYNGGAITSVDILAHAVIAPIMLIDQFLVADEFKLRHVIISQTFGVIYILFNIVWYYV-GWEEKVLYEVLDWDNKPLVAVIYGAVSILVLSPLFSLLHLFVCRRREMLHSRLREKLVAAQHIE 820 G GG + LR GTSRFL QG F+ +K++M ++ + WA +W + I LA TH +A YF +S S+ LC + + E EEG G SPVP R LQ + W +TC+ S+VV+++FW Y + ++ ++A +ML+DQFL+A E K ++ + F V+YI +N+++YY E++V +EV DWD +P A ++ + + P F+ LH+FV R RE +++ + L + E Sbjct: 21 GTRALFGGTRQQGLRAGTSRFLQQGWFVGWKAVMTIYCIVWAAWWDRGEDLDIRIYLATWTHM---LATAYFVISLISSLLCMAYLSR------EKPAPVEEG-----KPKRPPPVKGTRSPVPCYFRWLQHISWVLTCISSMVVLSVFWMTIYESDVPVTSVYVSSTILALLMLLDQFLIATEMKFKYAWLGLYFFVVYIFYNVIYYYEHNVEDRVTFEVFDWDERPGRACLWVFLILAFGVPGFTALHVFVYRLRERMYTSYKHNLEVIEEEE 281
BLAST of mRNA_L-elsbetiae_contig1945.5775.1 vs. uniprot
Match: A0A6H5JMZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ5_9PHAE) HSP 1 Score: 129 bits (323), Expect = 9.580e-31 Identity = 92/251 (36.65%), Postives = 136/251 (54.18%), Query Frame = 2 Query: 41 EELRVGTSRFLSQGTFLAYKSLMAVFFMSWAIYWREAGASIVLAK--LTHQTWYVAMVYFFVSSASAY--LCWRAIGKGSAGGAEAALEDEEGGGDLASMGGTKTNNGCGSPVPLALRRLQLVVWNITCVVSLVVVALFWFADYNGGAITSVDILAHAVIAPIMLIDQFLVADEFKLRHVIISQTFGVIYILFNIVWYYVGWE-EKVLYEVLDWDNKPLVAVIYGAVSILVLSPLFSLLHLFVCRRREMLH 778 + +R TSRFLSQ +FL YK + ++F+ W +W G I A +T+ WY+A +YF VS+A+AY L G G A +A G + N S AL Q+ WN+ CV SLV+V +FW A ++ +TS D+ AH +IAP+M IDQ LVA +F+ + ++ S F ++Y+ FNIV++ E E+V+Y +DW + + AV VL PL L+H V R RE ++ Sbjct: 17 DPVRAVTSRFLSQRSFLCYKVIATIYFVFWCYFW-PFGEDIDDAHKFVTYWGWYMAAIYFLVSTATAYSFLGSPMASDGPVRGTHA----------VAPHRGNR--NQPLSSNRRALLGFQVFSWNVACVGSLVIVTVFWVALFDNTPLTSTDVNAHILIAPVMAIDQLLVATKFERKQMLASFLFSIVYVAFNIVFFLTAPEDERVIYGQMDWGESVGNSAAFAAVVTFVLVPLGGLIHYCVFRLREYIY 254
BLAST of mRNA_L-elsbetiae_contig1945.5775.1 vs. uniprot
Match: A0A6H5JVA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVA0_9PHAE) HSP 1 Score: 124 bits (310), Expect = 5.430e-29 Identity = 71/153 (46.41%), Postives = 101/153 (66.01%), Query Frame = 2 Query: 362 PVPLALRRLQLVVWNITCVVSLVVVALFWFADYNGGA---ITSVDILAHAVIAPIMLIDQFLVADEFKLRHVIISQTFGVIYILFNIVWYYVGWE-EKVLYE-VLDWDNKPLVAVIYGAVSILVLSPLFSLLHLFVCRRREMLHSRLREKLVA 805 PVP LR LQLV+WNI C+ SL+V ++ DY + + D+ AH ++A ML+DQ L+AD +KL H+I +Q +G++Y+ F++VW+Y G E EK LYE LDWD L A + G V++ VL P+ LLHL V R RE L+ R+R+K +A Sbjct: 92 PVPRGLRWLQLVLWNIACIASLLVTFVWATEDYVRQVRQGVKNFDVQAHGLVAFFMLVDQLLIADTYKLGHMIFTQIYGLVYLAFSVVWFYNGPEDEKYLYEDTLDWDENRLQACLSGGVAVGVLVPIAGLLHLGVFRLREALYRRVRDKEIA 244
BLAST of mRNA_L-elsbetiae_contig1945.5775.1 vs. uniprot
Match: D7FX10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX10_ECTSI) HSP 1 Score: 120 bits (302), Expect = 9.520e-29 Identity = 70/151 (46.36%), Postives = 98/151 (64.90%), Query Frame = 2 Query: 362 PVPLALRRLQLVVWNITCVVSLVVVALFWFADY----NGGAITSVDILAHAVIAPIMLIDQFLVADEFKLRHVIISQTFGVIYILFNIVWYYVGWE-EKVLYE-VLDWDNKPLVAVIYGAVSILVLSPLFSLLHLFVCRRREMLHSRLREK 796 PVP LR LQLV+WNI C+ SL+V ++ DY G + D+ AH ++A ML+DQ L+AD FKL H+I +Q +G++Y+ F+++W+Y G E EK LYE LDW L A + G V++ VL P+ LLHL V R RE L+ R+R+K Sbjct: 10 PVPRGLRWLQLVLWNIACIASLLVTFVWASEDYVRQVRQGT-KNFDVQAHGLVAFFMLVDQLLIADTFKLGHMIFTQIYGLVYLAFSVIWFYKGPEDEKYLYEDTLDWGENRLQACLSGGVAVGVLVPIAGLLHLVVFRLREALYGRVRDK 159
BLAST of mRNA_L-elsbetiae_contig1945.5775.1 vs. uniprot
Match: D7G734_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G734_ECTSI) HSP 1 Score: 114 bits (286), Expect = 7.710e-27 Identity = 71/163 (43.56%), Postives = 99/163 (60.74%), Query Frame = 2 Query: 350 GCGSPVPLALRRLQLVVWNITCVVSLVVVALFWFADYNGGAITSVDILAHAVIAPIMLIDQFLVADEFKLRHVIISQTFGVIYILFNIVWYYVGWEE-KVLYEVLDWDNKPLVAVIYGAVSILVLSPLFSLLHLFVCRRREML-HSRLREKLVAA---QHIEI 823 G PVP LR LQLV+W+ C+ SL+VV +FW A +L+DQFLVADEFKLR+++ Q FGVIY+ FN+ WYY+ ++ +++Y +LDW++ L A IY +ILV +PLF L+HL + R RE + H+RL AA Q IE+ Sbjct: 10 GSPQPVPAVLRHLQLVLWSTACIGSLIVVTIFWGA---------------------LLLDQFLVADEFKLRYILFPQAFGVIYLFFNVGWYYLAPDDDRLIYIILDWEDNTLGACIYAFGAILVGAPLFGLVHLGLFRLRESVYHNRLARTSKAAAEAQSIEL 151
BLAST of mRNA_L-elsbetiae_contig1945.5775.1 vs. uniprot
Match: D7G735_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G735_ECTSI) HSP 1 Score: 99.8 bits (247), Expect = 6.520e-21 Identity = 55/136 (40.44%), Postives = 84/136 (61.76%), Query Frame = 2 Query: 374 ALRRLQLVVWNITCVVSLVVVALFWFADYNGGAITSVDILAHAVIAPIMLIDQFLVADEFKLRHVIISQTFGVIYILFNIVWYYVGWE-EKVLYEVLDWDNKPLVAVIYGAVSILVLSPLFSLLHLFVCRRREMLH 778 AL Q+ WN+ CV SLV+V +FW A ++ +TS D+ AH +IAPIM IDQ LVA +F+ + ++ S +F ++Y+ FNI+++ E E+V+Y +DW + + AV VL PL L+H V R RE ++ Sbjct: 30 ALLGFQVFSWNVACVGSLVIVTVFWVALFDNTPLTSTDVNAHILIAPIMAIDQLLVATKFERKQMLASFSFSIVYVAFNIIFFLTAPEDERVIYGQMDWGESVGNSAAFAAVVAFVLVPLGGLIHYCVFRLREYIY 165
BLAST of mRNA_L-elsbetiae_contig1945.5775.1 vs. uniprot
Match: UPI000A2A6325 (protein rolling stone n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A6325) HSP 1 Score: 60.8 bits (146), Expect = 9.060e-7 Identity = 56/236 (23.73%), Postives = 109/236 (46.19%), Query Frame = 2 Query: 89 LAYKSLMAVFFMSWAIYWREAGAS----IVLAKLTHQTWYVAMVYFFVSSASAYLCWRAIGKGSAGGAEAALEDEEGGGDLASMGGTKTNNGCGSPVPLALRRLQLVVWNITCVVSLVVVALFWFADYNGGAITSVDILAHAVIAPIMLIDQFLVADEFKLRHVIISQTFGVIYILFNIVWYYVGWEEKVLYEVLDWDNKPLVAVIYGAVSILVLSPLFSLLHLFVCRRREMLHSR 784 + Y+S+ ++ +SW IY A +VL LT+ +++V ++YFFVS+ S + + + D E G + G + ++ Q + ++++ ++L V FW Y+G +T D+ H + + MLID L + +L H+I F +Y++ ++ Y+ ++ +Y+ D++N PL A+ + ILV P+ + R R S+ Sbjct: 35 IVYRSVFFLYSISWIIYRLIAHDRFRQVVVLFYLTNWSYFVLIIYFFVSAVSTIFEYTKQRQ-----RQVHTADAERGHAHTTEGNARW-----------FQQAQWLFYSVSATMALGVTFFFWLFVYDGTGVTLSDVNVHILNSVFMLIDHSLSSMPVRLFHMIYPMAFTXLYMIATML-YWAFISKEYIYKATDYNNNPLQAIGIFLLGILVAGPVIHTFYYATYRLRRYAASK 253
BLAST of mRNA_L-elsbetiae_contig1945.5775.1 vs. uniprot
Match: A0A0N1IPM0_PAPMA (Protein rolling stone n=9 Tax=Papilio TaxID=7145 RepID=A0A0N1IPM0_PAPMA) HSP 1 Score: 55.8 bits (133), Expect = 4.090e-5 Identity = 42/150 (28.00%), Postives = 77/150 (51.33%), Query Frame = 2 Query: 383 RLQLVVWNITCVVSLVVVALFWFA----------DYNGGAITSVDILAHAVIAPIMLIDQFLVADEFKLRHVIISQTFGVIYILFNIVWYYVG----WEEKVLYEVLDWDNKPLVAVIYGAVSILVLSPLFSLLHLFVCRRREMLHSRLR 790 ++ V++NIT V+ ++ +W N ++D++ H V + +ML + L A +LRHV+ FG++Y++F IV+Y G W +Y V+DW +KP ++ +++ L L+ L +L + V R+M+ R R Sbjct: 107 KVYWVLYNITIPVAFLITVFYWSILNTVLRTFKKKVNYAPNPTLDVMLHGVNSLVMLTELILSAHPSRLRHVMQPLYFGIVYLIFTIVYYDAGGLDPWGHVFIYPVIDW-SKPEQTLVVASLTGLFLA-LMHILTVGVATLRDMIARRCR 254
BLAST of mRNA_L-elsbetiae_contig1945.5775.1 vs. uniprot
Match: UPI0016037AC5 (protein rolling stone-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016037AC5) HSP 1 Score: 54.7 bits (130), Expect = 7.760e-5 Identity = 40/151 (26.49%), Postives = 75/151 (49.67%), Query Frame = 2 Query: 383 RLQLVVWNITCVVSLVVVALFWFADYNGGAITSVDILAHAVIAPIMLIDQFLVADEFKLRHVIISQTFGVIYILFNIVWYYVGWE----EKVLYEVLDWDNKPLVAVIYGAVSILVLSPLFSLLHLFVCRRREMLHSRLREKLVAAQHIEI 823 +L V++N+ + + LFW GG +++ IL HA+ + ++ID + +L H + TFGV+YILF ++++ G + +Y LD+ P +A I + +LV PL + + RE L L+ + Q++++ Sbjct: 89 KLYWVLYNVAFGGGICITILFW--ALIGGDSSALSILIHAMNSVTIVIDVMVSGLPCRLLHFVYPLTFGVVYILFTVIYWAAGGTGPDGQPYIYPFLDYGGGPALAAIVAVLGVLVAIPLCHCIVFALVVARESLVRSLKRRQSDNQNVDV 237 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1945.5775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1945.5775.1 >prot_L-elsbetiae_contig1945.5775.1 ID=prot_L-elsbetiae_contig1945.5775.1|Name=mRNA_L-elsbetiae_contig1945.5775.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=241bp MAVFFMSWAIYWREAGASIVLAKLTHQTWYVAMVYFFVSSASAYLCWRAIback to top mRNA from alignment at L-elsbetiae_contig1945:2275..6202- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1945.5775.1 ID=mRNA_L-elsbetiae_contig1945.5775.1|Name=mRNA_L-elsbetiae_contig1945.5775.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3928bp|location=Sequence derived from alignment at L-elsbetiae_contig1945:2275..6202- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1945:2275..6202- >mRNA_L-elsbetiae_contig1945.5775.1 ID=mRNA_L-elsbetiae_contig1945.5775.1|Name=mRNA_L-elsbetiae_contig1945.5775.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1446bp|location=Sequence derived from alignment at L-elsbetiae_contig1945:2275..6202- (Laminarionema elsbetiae ELsaHSoW15)back to top |