mRNA_L-elsbetiae_contig19430.5769.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19430.5769.1
Unique NamemRNA_L-elsbetiae_contig19430.5769.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19430.5769.1 vs. uniprot
Match: A0A3B8NJ45_9FIRM (Uncharacterized protein n=1 Tax=Peptococcaceae bacterium TaxID=2052179 RepID=A0A3B8NJ45_9FIRM)

HSP 1 Score: 51.2 bits (121), Expect = 3.050e-7
Identity = 23/32 (71.88%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:   58 RPWTAPLLQGSCSRSEERRVGKECRSRWSPYH 153
            +P T  L +G   RSEERRVGKECRSRWSPYH
Sbjct:   42 QPVTEVLKEGEVFRSEERRVGKECRSRWSPYH 73
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BLAST of mRNA_L-elsbetiae_contig19430.5769.1 vs. uniprot
Match: UPI0015D7663E (hypothetical protein n=1 Tax=Staphylococcus haemolyticus TaxID=1283 RepID=UPI0015D7663E)

HSP 1 Score: 50.8 bits (120), Expect = 3.060e-7
Identity = 21/24 (87.50%), Postives = 22/24 (91.67%), Query Frame = 1 
Query:   82 QGSCSRSEERRVGKECRSRWSPYH 153
            +G C RSEERRVGKECRSRWSPYH
Sbjct:   35 EGVCIRSEERRVGKECRSRWSPYH 58
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BLAST of mRNA_L-elsbetiae_contig19430.5769.1 vs. uniprot
Match: UPI00116012D6 (hypothetical protein n=1 Tax=Enterococcus faecium TaxID=1352 RepID=UPI00116012D6)

HSP 1 Score: 50.1 bits (118), Expect = 7.590e-7
Identity = 27/50 (54.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:   19 ISVECGTCYAPP-----PRPWTAPLLQGSCSRSEERRVGKECRSRWSPYH 153
            I+V+ G   + P     P P  AP+     +RSEERRVGKECRSRWSPYH
Sbjct:   19 INVKTGVLRSIPNKINVPNP-PAPINAAKVARSEERRVGKECRSRWSPYH 67
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BLAST of mRNA_L-elsbetiae_contig19430.5769.1 vs. uniprot
Match: A0A3C1WIN3_9BACT (Uncharacterized protein n=1 Tax=Fibrobacteres bacterium TaxID=2052160 RepID=A0A3C1WIN3_9BACT)

HSP 1 Score: 50.1 bits (118), Expect = 2.550e-6
Identity = 23/37 (62.16%), Postives = 26/37 (70.27%), Query Frame = 1 
Query:   43 YAPPPRPWTAPLLQGSCSRSEERRVGKECRSRWSPYH 153
            +AP   P    +  G  +RSEERRVGKECRSRWSPYH
Sbjct:   88 FAPLITPELKHITLGGATRSEERRVGKECRSRWSPYH 124
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BLAST of mRNA_L-elsbetiae_contig19430.5769.1 vs. uniprot
Match: UPI001CC343BD (hypothetical protein n=1 Tax=Burkholderia vietnamiensis TaxID=60552 RepID=UPI001CC343BD)

HSP 1 Score: 48.5 bits (114), Expect = 3.800e-6
Identity = 21/24 (87.50%), Postives = 21/24 (87.50%), Query Frame = -3 
Query:   83 NDTATTEIYTLSLHDALPIWSKSP 154
            NDTATTEIYTLSLHDALPIW   P
Sbjct:   17 NDTATTEIYTLSLHDALPIWRARP 40
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BLAST of mRNA_L-elsbetiae_contig19430.5769.1 vs. uniprot
Match: UPI0015D94BFF (hypothetical protein n=1 Tax=Staphylococcus haemolyticus TaxID=1283 RepID=UPI0015D94BFF)

HSP 1 Score: 47.4 bits (111), Expect = 7.200e-6
Identity = 22/35 (62.86%), Postives = 24/35 (68.57%), Query Frame = 1 
Query:   61 PWTAPLL----QGSCSRSEERRVGKECRSRWSPYH 153
            PW A  +      +  RSEERRVGKECRSRWSPYH
Sbjct:   24 PWIASSICSRDSSAAFRSEERRVGKECRSRWSPYH 58
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BLAST of mRNA_L-elsbetiae_contig19430.5769.1 vs. uniprot
Match: UPI0009B75305 (BatD family protein n=1 Tax=Xanthomonas campestris pv. translucens TaxID=343 RepID=UPI0009B75305)

HSP 1 Score: 50.4 bits (119), Expect = 8.110e-6
Identity = 21/26 (80.77%), Postives = 23/26 (88.46%), Query Frame = 1 
Query:   76 LLQGSCSRSEERRVGKECRSRWSPYH 153
            +L G  +RSEERRVGKECRSRWSPYH
Sbjct:  379 VLPGRAARSEERRVGKECRSRWSPYH 404
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BLAST of mRNA_L-elsbetiae_contig19430.5769.1 vs. uniprot
Match: UPI001C5CAB24 (hypothetical protein n=1 Tax=Staphylococcus haemolyticus TaxID=1283 RepID=UPI001C5CAB24)

HSP 1 Score: 47.4 bits (111), Expect = 8.460e-6
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = -3 
Query:   95 NDTATTEIYTLSLHDALPIW 154
            NDTATTEIYTLSLHDALPIW
Sbjct:   48 NDTATTEIYTLSLHDALPIW 67
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BLAST of mRNA_L-elsbetiae_contig19430.5769.1 vs. uniprot
Match: UPI001E3ED01D (hypothetical protein n=1 Tax=Mycobacterium canettii TaxID=78331 RepID=UPI001E3ED01D)

HSP 1 Score: 47.4 bits (111), Expect = 1.210e-5
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = -3 
Query:   95 NDTATTEIYTLSLHDALPIW 154
            NDTATTEIYTLSLHDALPIW
Sbjct:   45 NDTATTEIYTLSLHDALPIW 64
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BLAST of mRNA_L-elsbetiae_contig19430.5769.1 vs. uniprot
Match: J2GI69_9SPHN (Uncharacterized protein (Fragment) n=1 Tax=Novosphingobium sp. AP12 TaxID=1144305 RepID=J2GI69_9SPHN)

HSP 1 Score: 47.4 bits (111), Expect = 1.630e-5
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = -3 
Query:   95 NDTATTEIYTLSLHDALPIW 154
            NDTATTEIYTLSLHDALPIW
Sbjct:    3 NDTATTEIYTLSLHDALPIW 22
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19430.5769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3B8NJ45_9FIRM3.050e-771.88Uncharacterized protein n=1 Tax=Peptococcaceae bac... [more]
UPI0015D7663E3.060e-787.50hypothetical protein n=1 Tax=Staphylococcus haemol... [more]
UPI00116012D67.590e-754.00hypothetical protein n=1 Tax=Enterococcus faecium ... [more]
A0A3C1WIN3_9BACT2.550e-662.16Uncharacterized protein n=1 Tax=Fibrobacteres bact... [more]
UPI001CC343BD3.800e-687.50hypothetical protein n=1 Tax=Burkholderia vietnami... [more]
UPI0015D94BFF7.200e-662.86hypothetical protein n=1 Tax=Staphylococcus haemol... [more]
UPI0009B753058.110e-680.77BatD family protein n=1 Tax=Xanthomonas campestris... [more]
UPI001C5CAB248.460e-6100.00hypothetical protein n=1 Tax=Staphylococcus haemol... [more]
UPI001E3ED01D1.210e-5100.00hypothetical protein n=1 Tax=Mycobacterium canetti... [more]
J2GI69_9SPHN1.630e-5100.00Uncharacterized protein (Fragment) n=1 Tax=Novosph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19430contigL-elsbetiae_contig19430:2629..2784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815806.4508579-CDS-L-elsbetiae_contig19430:2628..27841622815806.4508579-CDS-L-elsbetiae_contig19430:2628..2784Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19430 2629..2784 +
1691683114.8786745-CDS-L-elsbetiae_contig19430:2628..27841691683114.8786745-CDS-L-elsbetiae_contig19430:2628..2784Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19430 2629..2784 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19430.5769.1prot_L-elsbetiae_contig19430.5769.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19430 2629..2784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19430.5769.1

>prot_L-elsbetiae_contig19430.5769.1 ID=prot_L-elsbetiae_contig19430.5769.1|Name=mRNA_L-elsbetiae_contig19430.5769.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=52bp
SGAGQSISVECGTCYAPPPRPWTAPLLQGSCSRSEERRVGKECRSRWSPY
H*
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mRNA from alignment at L-elsbetiae_contig19430:2629..2784+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19430.5769.1 ID=mRNA_L-elsbetiae_contig19430.5769.1|Name=mRNA_L-elsbetiae_contig19430.5769.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=156bp|location=Sequence derived from alignment at L-elsbetiae_contig19430:2629..2784+ (Laminarionema elsbetiae ELsaHSoW15)
AGTGGTGCGGGACAATCAATCTCCGTAGAATGTGGGACTTGCTACGCCCC
TCCCCCGCGCCCCTGGACGGCACCCCTCCTCCAGGGCTCTTGCTCCAGAT
CGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTAT
CATTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19430:2629..2784+

>mRNA_L-elsbetiae_contig19430.5769.1 ID=mRNA_L-elsbetiae_contig19430.5769.1|Name=mRNA_L-elsbetiae_contig19430.5769.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=312bp|location=Sequence derived from alignment at L-elsbetiae_contig19430:2629..2784+ (Laminarionema elsbetiae ELsaHSoW15)
AGTGGTGCGGGACAATCAATCTCCGTAGAATGTGGGACTTGCTACGCCCC
TCCCCCGCGCCCCTGGACGGCACCCCTCCTCCAGGGCTCTTGCTCCAGAT
CGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTAT
CATTAAAGTGGTGCGGGACAATCAATCTCCGTAGAATGTGGGACTTGCTA
CGCCCCTCCCCCGCGCCCCTGGACGGCACCCCTCCTCCAGGGCTCTTGCT
CCAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCG
CCGTATCATTAA
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