mRNA_L-elsbetiae_contig19371.5740.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19371.5740.1
Unique NamemRNA_L-elsbetiae_contig19371.5740.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19371.5740.1 vs. uniprot
Match: D7FK36_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK36_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 2.750e-17
Identity = 50/83 (60.24%), Postives = 62/83 (74.70%), Query Frame = 1 
Query:   10 RGDEQHHGSEEQSSRRFSRSYRLGKKMGEGEFANTYGATKRGEKRGERSSCIVKRA-RRGSSKDGEHALAEEARILRLLTHRS 255
            RG EQ+ G E+  S  FSR Y LGKK+GEG FA T+GA +RG+++G + SCIVKRA +RG+S +  H L EEARILRLLTH S
Sbjct:  498 RGTEQNRG-EQPGSSEFSRLYALGKKLGEGAFAETFGAIRRGQRKGSQGSCIVKRAVQRGASHEVMHGLVEEARILRLLTHPS 579
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BLAST of mRNA_L-elsbetiae_contig19371.5740.1 vs. uniprot
Match: D8LK21_ECTSI (Possible Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK21_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.640e-11
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:    7 VRGDEQHHGSEEQSSRRFSRSYRLGKKMGEGEFANTYGATKRGEKRGERSSCIVKRARRGSSKDGEHALAEEARILRLLTH 249
            + G +  H   E  S+RFSRS+ LGKK+GEG FA  + AT +G++ G +S  + +  RRG +K+ E  L EE RILRLL H
Sbjct:   59 LSGGDGKHSFREFHSKRFSRSFNLGKKLGEGAFAEVFEATVKGDRPGGKSYAVKRTVRRGLAKEDEKGLLEEVRILRLLQH 139
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19371.5740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK36_ECTSI2.750e-1760.24Protein kinase domain-containing protein n=2 Tax=E... [more]
D8LK21_ECTSI1.640e-1146.91Possible Ca2+/calmodulin-dependent protein kinase,... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19371contigL-elsbetiae_contig19371:461..1130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue2.2e-14
Seed eggNOG ortholog2880.D7FK36
Hectar predicted targeting categoryother localisation
EggNOG free text desc.calmodulin-dependent protein kinase activity
EggNOG OGsKOG0033@1,KOG0033@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815803.3732314-CDS-L-elsbetiae_contig19371:460..6821622815803.3732314-CDS-L-elsbetiae_contig19371:460..682Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19371 461..682 +
1691683112.8260057-CDS-L-elsbetiae_contig19371:460..6821691683112.8260057-CDS-L-elsbetiae_contig19371:460..682Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19371 461..682 +
1622815803.3854072-CDS-L-elsbetiae_contig19371:1097..11301622815803.3854072-CDS-L-elsbetiae_contig19371:1097..1130Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19371 1098..1130 +
1691683112.8387074-CDS-L-elsbetiae_contig19371:1097..11301691683112.8387074-CDS-L-elsbetiae_contig19371:1097..1130Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19371 1098..1130 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19371.5740.1prot_L-elsbetiae_contig19371.5740.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19371 461..1130 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19371.5740.1

>prot_L-elsbetiae_contig19371.5740.1 ID=prot_L-elsbetiae_contig19371.5740.1|Name=mRNA_L-elsbetiae_contig19371.5740.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
QKVRGDEQHHGSEEQSSRRFSRSYRLGKKMGEGEFANTYGATKRGEKRGE
RSSCIVKRARRGSSKDGEHALAEEARILRLLTHRS
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mRNA from alignment at L-elsbetiae_contig19371:461..1130+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19371.5740.1 ID=mRNA_L-elsbetiae_contig19371.5740.1|Name=mRNA_L-elsbetiae_contig19371.5740.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=670bp|location=Sequence derived from alignment at L-elsbetiae_contig19371:461..1130+ (Laminarionema elsbetiae ELsaHSoW15)
CAAAAGGTGAGAGGCGACGAGCAACACCACGGAAGCGAGGAGCAGTCATC
CCGGAGGTTCTCCCGGTCGTACAGACTGGGCAAGAAGATGGGGGAGGGAG
AATTCGCAAACACGTACGGAGCTACCAAGCGCGGGGAAAAGCGCGGGGAA
AGGTCGTCGTGCATCGTCAAACGGGCTCGACGGGGATCGTCGAAGGACGG
TGAACACGCCTTGGCTGAGGAGGTGAGGCAACTCGGCTGTTTATTCAAGC
GGGAACCTCTTATGTATGATCTCAGGATGTGGTGGTGAAACCGCCGTATG
TAGCATTAAGCAGCTGACGACTACAGCCCGCGCTGCAAGAGCTGTCTCTT
CCACAAGTGCTACCCAGCCTTGCTACAGCAGTAGCGTCAGATTTCTAAAC
TTTGTGTATGTACGTTGTGTGTCATTTTTGTTCGGTGCAAGCGGGCGTCA
TCGCAACGTGTCTGTTCAGCTCGTACACATGTACGCCCACGTGCCCTCCT
CGCTGATTATTTGCCCCAAAGACCATTTCGATCGAAGTGCACTCTAACGA
AAATTGCTACGCTAATGATTTTGGTTTTTTTCGTGCACACGCTTCTCGCG
GGCGTTTTTTTTTTTTTTTTTGCGCCCGCCGAGCAAGGCCCGGATACTGC
GACTGCTGACACACCGAAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19371:461..1130+

>mRNA_L-elsbetiae_contig19371.5740.1 ID=mRNA_L-elsbetiae_contig19371.5740.1|Name=mRNA_L-elsbetiae_contig19371.5740.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig19371:461..1130+ (Laminarionema elsbetiae ELsaHSoW15)
CAAAAGGTGAGAGGCGACGAGCAACACCACGGAAGCGAGGAGCAGTCATC
CCGGAGGTTCTCCCGGTCGTACAGACTGGGCAAGAAGATGGGGGAGGGAG
AATTCGCAAACACGTACGGAGCTACCAAGCGCGGGGAAAAGCGCGGGGAA
AGGTCGTCGTGCATCGTCAAACGGGCTCGACGGGGATCGTCGAAGGACGG
TGAACACGCCTTGGCTGAGGAGCAAAAGGTGAGAGGCGACGAGCAACACC
ACGGAAGCGAGGAGCAGTCATCCCGGAGGTTCTCCCGGTCGTACAGACTG
GGCAAGAAGATGGGGGAGGGAGAATTCGCAAACACGTACGGAGCTACCAA
GCGCGGGGAAAAGCGCGGGGAAAGGTCGTCGTGCATCGTCAAACGGGCTC
GACGGGGATCGTCGAAGGACGGTGAACACGCCTTGGCTGAGGAGGCCCGG
ATACTGCGACTGCTGACACACCGAAGCGCCCGGATACTGCGACTGCTGAC
ACACCGAAGC
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