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Homology
BLAST of mRNA_L-elsbetiae_contig1934.5728.1 vs. uniprot
Match: D7FKK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKK4_ECTSI) HSP 1 Score: 338 bits (866), Expect = 1.960e-111 Identity = 205/367 (55.86%), Postives = 248/367 (67.57%), Query Frame = 1
Query: 25 MVETDL-QAALLVVGLIFLVVVCALFQRRPRPDAFSHEELGQIRIDRELAKEAMLEEKAQRLKGRARVHRHNRMVLTARKDSGRLLQGAQERWDARGRSIYGDAWDDPQDGNLPLRTLFNLPRGEIDSIREEASRLLQASPASDFSSLPFPPGRLQKFDSSGAQGFSDVGGVGKDEHRAMTASARRGPAY-TSRQLSGAPFVDTRFVNVPTP--IVPPLDLTRLNDASNAHNLQPFPRPS--STTVAPGRKLFHDTSASPSEINPMQINSAAPLREEHDRSTDPAATTTTARGDTNLDLKDFTKQTAPASVSWFQDPGLIHPKPPDIPVSRSKRDDH----GNESLSARLARLAAGGSSRRVVPIEF 1095
MVE+ L QA ++VVGL LV+VC LFQ RPRP+AFS E+LGQIRI+RE+AKEA+LEEKAQRLK RAR+HRHNR+VLTARK +GRLL GAQERWDARGRSIYGDAWDDP DGN+PLRTLFNLP+ EIDSIREEASRLL++ PASDFSSLP PPG+ ++ A +D+HRAMTA ARRGPAY R + APFVD+RFV++ T +VPPLD RLN+ + FP S A G ++ D + + NP NS +R + A A G T D ++ PA +S FQ PGL HP+PP +P R+K + G ESLSARLARLAAG + RVVP+E
Sbjct: 1 MVESGLMQAVVIVVGLTVLVMVCILFQGRPRPNAFSPEQLGQIRINREMAKEALLEEKAQRLKERARIHRHNRLVLTARKGAGRLLHGAQERWDARGRSIYGDAWDDPHDGNVPLRTLFNLPKEEIDSIREEASRLLESEPASDFSSLPTPPGQQRRVRDGSASSVRRTTDSDQDDHRAMTAPARRGPAYGNGRSPTAAPFVDSRFVHLSTSPAVVPPLDFARLNNDPSK-----FPPGDVWSYPAAKGGEMLRDRLPT-QDRNP---NSRQRMRVQ--------ARNGPASGHTTRDDQEL--HGGPAVISSFQAPGLTHPEPPAVPFLRAKPETESKELGRESLSARLARLAAGRTPGRVVPVEL 348
BLAST of mRNA_L-elsbetiae_contig1934.5728.1 vs. uniprot
Match: A0A6H5JIG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG2_9PHAE) HSP 1 Score: 234 bits (596), Expect = 3.830e-73 Identity = 121/158 (76.58%), Postives = 140/158 (88.61%), Query Frame = 1
Query: 25 MVETDL-QAALLVVGLIFLVVVCALFQRRPRPDAFSHEELGQIRIDRELAKEAMLEEKAQRLKGRARVHRHNRMVLTARKDSGRLLQGAQERWDARGRSIYGDAWDDPQDGNLPLRTLFNLPRGEIDSIREEASRLLQAS-PASDFSSLPFPPGRLQK 492
MVE+ L QA ++VVGL LV+VC LFQ RPRP+AFS E+LGQ+RIDRE+AKEA+LEEKAQRLK RAR+HRHNR+VLTARK +GRLL GAQERWDARGRSIYGDAWDDP DGN+PLRTLFNLP+ EIDSIREEASRLL++ PASDF SLP PPG+ ++
Sbjct: 1 MVESGLMQAVVIVVGLTVLVMVCILFQGRPRPNAFSPEQLGQLRIDREMAKEALLEEKAQRLKERARIHRHNRLVLTARKGAGRLLHGAQERWDARGRSIYGDAWDDPHDGNVPLRTLFNLPKEEIDSIREEASRLLESEWPASDFLSLPTPPGQQRR 158
BLAST of mRNA_L-elsbetiae_contig1934.5728.1 vs. uniprot
Match: A0A835ZJ30_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ30_9STRA) HSP 1 Score: 121 bits (303), Expect = 4.810e-28 Identity = 84/219 (38.36%), Postives = 124/219 (56.62%), Query Frame = 1
Query: 31 ETDLQAALLVVGLIFLVVVCALFQ--RRPRPDAFSHEELGQIRIDRELAKEAMLEEKAQRLKGRARVHRHNRMVLTARKDSGRLL--QGAQERWDARGRSIYGDAWDDPQDGNLPLRTLFNLPRGEIDSIREEASRLLQASPASDFS----SLPFP----PGRLQKFDSSGAQGFSDVGGVGKDEHRA----MTASARRGPAYTSRQLSGAPFVDTRFV 639
E +QAAL+VV +I +V+C+L+ R RP F+ EL +IR+ +E +EA L+EK Q ++ R ++H NRM+LTAR + R++ +G + WD +GR++YG AWD+P DGNLPLR LFNLP EI + + +A++L++ + + P P P + S V + +H A MTA A R A SR AP+ D RFV
Sbjct: 2 EQGIQAALIVVAVILFLVICSLYTLFRPRRPRMFTPLELDEIRLRKEEEREAALDEKIQAMQQRKKMHSTNRMMLTARTKTARVVDEEGGAD-WDEKGRAVYGSAWDEPNDGNLPLRELFNLPDEEIRAAKAQAAQLVEMQTYRQLTVRHTAQPPPTTAAPSPRPHYTSPRPTPPLPVTSSAQQQHPAAEPLMTARANR--AAQSRPAYEAPYDDPRFV 217
BLAST of mRNA_L-elsbetiae_contig1934.5728.1 vs. uniprot
Match: A0A7S3ZP92_9STRA (Hypothetical protein (Fragment) n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZP92_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 3.710e-12 Identity = 43/124 (34.68%), Postives = 69/124 (55.65%), Query Frame = 1
Query: 49 ALLVVGLIFLVVVCALFQRRPRPDAFSHEELGQIRIDRELAKEAMLEEKAQRLKGRARVHRHNRMVLTARKDSGRLLQGAQERWDARGRSIYGDAWDDPQDGNLPLRTLFNLPRGEIDSIREEA 420
A + VGL+F +V C R FS ++L ++R R+ E +E + +++K + + + R + R RLL A+ R DARGR +YGD WD+P + +P+R LF L GE+ ++ EA
Sbjct: 52 AYVCVGLVFCIVSCFKVFGHRRRRKFSKKQLDRLRDWRDGRAETKVESQIRKMKDKLKTMKQRRRLERGRDAHERLLDEAEARRDARGREVYGDEWDNPDNDGVPIRDLFALSDGEVRQLQLEA 175
BLAST of mRNA_L-elsbetiae_contig1934.5728.1 vs. uniprot
Match: A0A7S4DFT0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DFT0_HETAK) HSP 1 Score: 54.3 bits (129), Expect = 1.050e-5 Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 1
Query: 274 LLQGAQERWDARGRSIYGDAWDDPQDGNLPLRTLFNLPRGEI 399
+++ ++DA+GR +YGDAWD P DGN PLR L LP E+
Sbjct: 69 MVEDGISQYDAKGREVYGDAWDTPVDGNAPLRELLALPEDEL 110
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 339.0 |
Seed ortholog evalue | 2.8e-90 |
Seed eggNOG ortholog | 2880.D7FKK4 |
Hectar predicted targeting category | signal peptide |
EggNOG OGs | 2EYZZ@1,2T0E5@2759 |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
Ec32 ortholog description | expressed unknown protein |
Ec32 ortholog | Ec-12_001760.1 |
Exons | 4 |
Model size | 1101 |
Cds size | 1077 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815802.2422867-CDS-L-elsbetiae_contig1934:2622..3192 | 1622815802.2422867-CDS-L-elsbetiae_contig1934:2622..3192 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1934 2623..3192 - |
1691683112.1057673-CDS-L-elsbetiae_contig1934:2622..3192 | 1691683112.1057673-CDS-L-elsbetiae_contig1934:2622..3192 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1934 2623..3192 - |
1622815802.2568467-CDS-L-elsbetiae_contig1934:3497..3660 | 1622815802.2568467-CDS-L-elsbetiae_contig1934:3497..3660 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1934 3498..3660 - |
1691683112.115615-CDS-L-elsbetiae_contig1934:3497..3660 | 1691683112.115615-CDS-L-elsbetiae_contig1934:3497..3660 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1934 3498..3660 - |
1622815802.268417-CDS-L-elsbetiae_contig1934:3856..4047 | 1622815802.268417-CDS-L-elsbetiae_contig1934:3856..4047 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1934 3857..4047 - |
1691683112.1258366-CDS-L-elsbetiae_contig1934:3856..4047 | 1691683112.1258366-CDS-L-elsbetiae_contig1934:3856..4047 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1934 3857..4047 - |
1622815802.2810633-CDS-L-elsbetiae_contig1934:4806..4959 | 1622815802.2810633-CDS-L-elsbetiae_contig1934:4806..4959 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1934 4807..4959 - |
1691683112.137029-CDS-L-elsbetiae_contig1934:4806..4959 | 1691683112.137029-CDS-L-elsbetiae_contig1934:4806..4959 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1934 4807..4959 - |
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815802.294427-UTR-L-elsbetiae_contig1934:4959..4983 | 1622815802.294427-UTR-L-elsbetiae_contig1934:4959..4983 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1934 4960..4983 - |
1691683112.1455672-UTR-L-elsbetiae_contig1934:4959..4983 | 1691683112.1455672-UTR-L-elsbetiae_contig1934:4959..4983 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1934 4960..4983 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1934.5728.1 >prot_L-elsbetiae_contig1934.5728.1 ID=prot_L-elsbetiae_contig1934.5728.1|Name=mRNA_L-elsbetiae_contig1934.5728.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=359bp
MVETDLQAALLVVGLIFLVVVCALFQRRPRPDAFSHEELGQIRIDRELAK EAMLEEKAQRLKGRARVHRHNRMVLTARKDSGRLLQGAQERWDARGRSIY GDAWDDPQDGNLPLRTLFNLPRGEIDSIREEASRLLQASPASDFSSLPFP PGRLQKFDSSGAQGFSDVGGVGKDEHRAMTASARRGPAYTSRQLSGAPFV DTRFVNVPTPIVPPLDLTRLNDASNAHNLQPFPRPSSTTVAPGRKLFHDT SASPSEINPMQINSAAPLREEHDRSTDPAATTTTARGDTNLDLKDFTKQT APASVSWFQDPGLIHPKPPDIPVSRSKRDDHGNESLSARLARLAAGGSSR RVVPIEFA* back to topmRNA from alignment at L-elsbetiae_contig1934:2623..4983- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1934.5728.1 ID=mRNA_L-elsbetiae_contig1934.5728.1|Name=mRNA_L-elsbetiae_contig1934.5728.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2361bp|location=Sequence derived from alignment at L-elsbetiae_contig1934:2623..4983- (Laminarionema elsbetiae ELsaHSoW15) TTATGTTTGGGGCCGCGGTGGTCCATGGTCGAAACAGATCTGCAAGCGGC
CCTGCTTGTGGTAGGACTGATATTCCTTGTTGTCGTGTGTGCGTTGTTCC
AGCGACGGCCACGACCAGATGCATTTTCTCACGAAGAGCTAGGCCAGATA
CGGATCGATCGAGAACTGGCGAAGGAGGTGAGGAATACGGGAATCATCAA
TAACTGTGCTGAACTTTGACGCGCAGCCACTCGGTGAGGTACAACGCGTA
TCTTTGTAGATATCGGCAGATGTACCTACGTGCCATAGTAGATAGTTGCA
CAGACAGCACCTGCACCCGTACCTTATGTACTTCGAGTGAGATAGAGCCA
GCCAAACACCTGCTGCCCATTATAGTATTCTGCTATATGTACATACATAT
GTGTATGCATGGTCCTCCCTTTCAGCCTCTCGTGCGGCCGACAGGGGCGG
GCGGGTGTTACGGGTGGCAAGAAGAGGGTTATTTTCCCGCCAGAGGCCCC
TCCTAACAGCAGCAATTCACCGTAATGAGCCCGTGCGTTATAAAATAACT
AGTTTGTTTGACATTCGAGTGAAAATGGTTTTTGTTTTGCACAGTATAAC
TGCAAGAACGAGCAGGCTTACGAGAACCCGGTGCACATAAAAATCGCCGG
TATGCAGACTACATAGCTCTGGTCGTAGCCTATATACCTACTTTTATTTC
ATTGTATCGTTATTGACAGCAGCAGTCCATTGTTGCCCGCCACCGAAGCA
GGCGCGGAAAATAGGACTCGGCAGCACTACTAAACGCGGCAGACAGCACA
CACGCCACACAAGCGACAGTTCGGTGCGCCGTCGATACTGAGGCTTCAAA
AATCAGTCCCCCCTGTGACTACTGCGTGATTTCGTGTGTGCCCCCGTTCT
CTGCTACATAATACTTTACTTGCCCTGTAATAATAGGCGATGTTGGAGGA
GAAAGCGCAACGGCTCAAAGGGCGTGCTCGAGTCCACAGGCACAATCGGA
TGGTCCTCACGGCTCGCAAGGATTCTGGCCGCTTGCTGCAGGGTGCACAG
GAGAGATGGGATGCGAGGGGCAGGTCGATCTATGGCGATGCATGGGACGA
TCCCCAGGATGGGAATCTTCCTCTCAGGTTCGCAGCAAGGGCTATGCAAA
CATGGCTAGCATTCTGTCGTTATATCGCCACTCGACGCCTTCCTCCGATG
GACCGCTTGAGGTGATGCTCAGCTTGGGCACATTTGTTTTGGAAACATGC
ACGATGCACGATTGTTCAAGAGATCAGATTAAAGATGAGACCAATCTCGT
ACGGGTGCTCGTCGCGTTCGCAGGACCCTCTTTAATCTTCCGAGGGGGGA
AATTGATTCGATTCGAGAAGAGGCCAGCAGGCTTCTCCAGGCTTCTCCAG
CAAGTGATTTTTCATCTCTGCCCTTCCCCCCAGGACGTCTGCAAAAATTT
GACAGTAGTGGTGCTCAGGGCTTTTCAGATGTGGGCGTCAGAAAAACGGT
AAGTGGTGCCAACGATCACAGAGAAGCGTCTTTCTAAACAAGCTAGGCTA
CAATGGTCATGAAGACCAGATCGGATATCAAGGCACACAAGTGCCGTACA
CCCACGACAGGCACCGGTATTACAATGTATACTTACATACAGGCACCGAT
ATAAAGTACAATGTTTATCTACTTACATACGCCCGAACCAACCCTCCCCT
GCCCATCATGACGAAATGCGAGCTCAACGTAACTCGTACAAGAAACTACC
CCGTCCGATTGCTCCTTTCCCGGCGAACGTGAAATCGAAAGGGCGTCGGC
AAAGACGAGCACCGTGCGATGACAGCATCCGCCCGCCGGGGGCCTGCCTA
CACCAGTCGTCAACTTTCGGGCGCGCCATTTGTCGACACACGGTTTGTCA
ACGTACCGACACCCATTGTGCCTCCACTCGACCTCACCCGGCTGAACGAC
GCGAGCAATGCACATAACCTGCAACCATTTCCTCGGCCGTCGTCAACTAC
TGTCGCACCCGGCCGCAAACTGTTTCACGACACGAGTGCATCTCCATCAG
AAATAAACCCCATGCAAATAAACTCGGCGGCCCCACTCCGAGAAGAGCAC
GACAGATCCACAGATCCGGCGGCCACGACTACGACCGCTAGGGGCGACAC
CAATTTGGACCTTAAAGATTTCACCAAGCAAACGGCCCCCGCGTCAGTAA
GTTGGTTTCAAGACCCAGGACTAATCCACCCCAAGCCGCCAGATATTCCG
GTTTCGAGATCGAAGAGGGACGACCACGGCAATGAAAGTCTGTCAGCACG
ACTGGCGAGGCTTGCTGCAGGCGGAAGTTCGAGGAGGGTGGTGCCAATAG
AGTTCGCGTAA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1934:2623..4983- >mRNA_L-elsbetiae_contig1934.5728.1 ID=mRNA_L-elsbetiae_contig1934.5728.1|Name=mRNA_L-elsbetiae_contig1934.5728.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2154bp|location=Sequence derived from alignment at L-elsbetiae_contig1934:2623..4983- (Laminarionema elsbetiae ELsaHSoW15) ATGGTCGAAACAGATCTGCAAGCGGCCCTGCTTGTGGTAGGACTGATATT CCTTGTTGTCGTGTGTGCGTTGTTCCAGCGACGGCCACGACCAGATGCAT TTTCTCACGAAGAGCTAGGCCAGATACGGATCGATCGAGAACTGGCGAAG GAGATGGTCGAAACAGATCTGCAAGCGGCCCTGCTTGTGGTAGGACTGAT ATTCCTTGTTGTCGTGTGTGCGTTGTTCCAGCGACGGCCACGACCAGATG CATTTTCTCACGAAGAGCTAGGCCAGATACGGATCGATCGAGAACTGGCG AAGGAGGCGATGTTGGAGGAGAAAGCGCAACGGCTCAAAGGGCGTGCTCG AGTCCACAGGCACAATCGGATGGTCCTCACGGCTCGCAAGGATTCTGGCC GCTTGCTGCAGGGTGCACAGGAGAGATGGGATGCGAGGGGCAGGTCGATC TATGGCGATGCATGGGACGATCCCCAGGATGGGAATCTTCCTCTCAGGCG ATGTTGGAGGAGAAAGCGCAACGGCTCAAAGGGCGTGCTCGAGTCCACAG GCACAATCGGATGGTCCTCACGGCTCGCAAGGATTCTGGCCGCTTGCTGC AGGGTGCACAGGAGAGATGGGATGCGAGGGGCAGGTCGATCTATGGCGAT GCATGGGACGATCCCCAGGATGGGAATCTTCCTCTCAGGACCCTCTTTAA TCTTCCGAGGGGGGAAATTGATTCGATTCGAGAAGAGGCCAGCAGGCTTC TCCAGGCTTCTCCAGCAAGTGATTTTTCATCTCTGCCCTTCCCCCCAGGA CGTCTGCAAAAATTTGACAGTAGTGGTGCTCAGGGCTTTTCAGATGTGGG CGACCCTCTTTAATCTTCCGAGGGGGGAAATTGATTCGATTCGAGAAGAG GCCAGCAGGCTTCTCCAGGCTTCTCCAGCAAGTGATTTTTCATCTCTGCC CTTCCCCCCAGGACGTCTGCAAAAATTTGACAGTAGTGGTGCTCAGGGCT TTTCAGATGTGGGCGGCGTCGGCAAAGACGAGCACCGTGCGATGACAGCA TCCGCCCGCCGGGGGCCTGCCTACACCAGTCGTCAACTTTCGGGCGCGCC ATTTGTCGACACACGGTTTGTCAACGTACCGACACCCATTGTGCCTCCAC TCGACCTCACCCGGCTGAACGACGCGAGCAATGCACATAACCTGCAACCA TTTCCTCGGCCGTCGTCAACTACTGTCGCACCCGGCCGCAAACTGTTTCA CGACACGAGTGCATCTCCATCAGAAATAAACCCCATGCAAATAAACTCGG CGGCCCCACTCCGAGAAGAGCACGACAGATCCACAGATCCGGCGGCCACG ACTACGACCGCTAGGGGCGACACCAATTTGGACCTTAAAGATTTCACCAA GCAAACGGCCCCCGCGTCAGTAAGTTGGTTTCAAGACCCAGGACTAATCC ACCCCAAGCCGCCAGATATTCCGGTTTCGAGATCGAAGAGGGACGACCAC GGCAATGAAAGTCTGTCAGCACGACTGGCGAGGCTTGCTGCAGGCGGAAG TTCGAGGAGGGTGGTGCCAATAGAGTTCGCGTAAGGCGTCGGCAAAGACG AGCACCGTGCGATGACAGCATCCGCCCGCCGGGGGCCTGCCTACACCAGT CGTCAACTTTCGGGCGCGCCATTTGTCGACACACGGTTTGTCAACGTACC GACACCCATTGTGCCTCCACTCGACCTCACCCGGCTGAACGACGCGAGCA ATGCACATAACCTGCAACCATTTCCTCGGCCGTCGTCAACTACTGTCGCA CCCGGCCGCAAACTGTTTCACGACACGAGTGCATCTCCATCAGAAATAAA CCCCATGCAAATAAACTCGGCGGCCCCACTCCGAGAAGAGCACGACAGAT CCACAGATCCGGCGGCCACGACTACGACCGCTAGGGGCGACACCAATTTG GACCTTAAAGATTTCACCAAGCAAACGGCCCCCGCGTCAGTAAGTTGGTT TCAAGACCCAGGACTAATCCACCCCAAGCCGCCAGATATTCCGGTTTCGA GATCGAAGAGGGACGACCACGGCAATGAAAGTCTGTCAGCACGACTGGCG AGGCTTGCTGCAGGCGGAAGTTCGAGGAGGGTGGTGCCAATAGAGTTCGC GTAA back to top
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