mRNA_L-elsbetiae_contig19310.5720.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19310.5720.1
Unique NamemRNA_L-elsbetiae_contig19310.5720.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19310.5720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19310contigL-elsbetiae_contig19310:1194..1976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size281
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815801.715307-CDS-L-elsbetiae_contig19310:1194..13381622815801.715307-CDS-L-elsbetiae_contig19310:1194..1338Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19310 1195..1338 -
1691683111.8007936-CDS-L-elsbetiae_contig19310:1194..13381691683111.8007936-CDS-L-elsbetiae_contig19310:1194..1338Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19310 1195..1338 -
1622815801.7297664-CDS-L-elsbetiae_contig19310:1841..19761622815801.7297664-CDS-L-elsbetiae_contig19310:1841..1976Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19310 1842..1976 -
1691683111.814484-CDS-L-elsbetiae_contig19310:1841..19761691683111.814484-CDS-L-elsbetiae_contig19310:1841..1976Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19310 1842..1976 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19310.5720.1prot_L-elsbetiae_contig19310.5720.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19310 1195..1976 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19310.5720.1

>prot_L-elsbetiae_contig19310.5720.1 ID=prot_L-elsbetiae_contig19310.5720.1|Name=mRNA_L-elsbetiae_contig19310.5720.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
ALGECCPGLQRLDVKGCDGVTDVGLAWMSSGCPALEYLDVSGCVKVSNAG
VTSLCEKCPLLAHLGMASLKHVTDTGVARLGSGCTRLTHLDMS
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mRNA from alignment at L-elsbetiae_contig19310:1194..1976-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19310.5720.1 ID=mRNA_L-elsbetiae_contig19310.5720.1|Name=mRNA_L-elsbetiae_contig19310.5720.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=783bp|location=Sequence derived from alignment at L-elsbetiae_contig19310:1194..1976- (Laminarionema elsbetiae ELsaHSoW15)
GCATTGGGCGAGTGTTGTCCTGGCCTCCAGCGGCTCGATGTGAAGGGATG
TGACGGCGTGACTGATGTTGGGCTTGCGTGGATGTCAAGCGGCTGCCCTG
CCTTGGAATACCTGGACGTGTCTGGCTGCGTGAAGGTAAGGAAGGCGTGT
GGCGTGCCTGTACATGTGCTAAGGGGGGGGGGGGGGGGGGGGCAACAAGG
CGCCCCCGACCAAAGGGGCCCGGCCCCCCGGGCCGCNNNTAATTACGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGTGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGTGTTGAATGAAGTGGCACTAGAACAAA
GGAGGCATGCAATGCGGGAGTCATCGGACGTTGCTTCAGAACCATCCTTG
GAAAACGGGCAATTGGCTGTTACTCGACTTCTTCACCCATGTTACGCCTC
CAAAACACAAGCCCCGTCGCAGCAAAAGGGGCGTTATCTGCTGGTTCGTA
GCAAAGAAGGAAAGGAGAGGGGAGGGGACAGATAGACCTCATTTTTTTTC
CAGGCATTTAGTTTGATGTCAGCACGACATCTCATCTCGCCACCACCATC
ACCATCACCACCACCACCATCTCCACCGCCACCACCAGGTTTCGAACGCG
GGAGTCACAAGCCTCTGCGAGAAGTGCCCCCTGCTCGCCCACCTCGGGAT
GGCGTCCCTCAAGCACGTGACTGACACCGGCGTGGCCAGGCTCGGTTCCG
GGTGCACAAGGCTGACCCATCTCGACATGTCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19310:1194..1976-

>mRNA_L-elsbetiae_contig19310.5720.1 ID=mRNA_L-elsbetiae_contig19310.5720.1|Name=mRNA_L-elsbetiae_contig19310.5720.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig19310:1194..1976- (Laminarionema elsbetiae ELsaHSoW15)
GCATTGGGCGAGTGTTGTCCTGGCCTCCAGCGGCTCGATGTGAAGGGATG
TGACGGCGTGACTGATGTTGGGCTTGCGTGGATGTCAAGCGGCTGCCCTG
CCTTGGAATACCTGGACGTGTCTGGCTGCGTGAAGGCATTGGGCGAGTGT
TGTCCTGGCCTCCAGCGGCTCGATGTGAAGGGATGTGACGGCGTGACTGA
TGTTGGGCTTGCGTGGATGTCAAGCGGCTGCCCTGCCTTGGAATACCTGG
ACGTGTCTGGCTGCGTGAAGGTTTCGAACGCGGGAGTCACAAGCCTCTGC
GAGAAGTGCCCCCTGCTCGCCCACCTCGGGATGGCGTCCCTCAAGCACGT
GACTGACACCGGCGTGGCCAGGCTCGGTTCCGGGTGCACAAGGCTGACCC
ATCTCGACATGTCCGTTTCGAACGCGGGAGTCACAAGCCTCTGCGAGAAG
TGCCCCCTGCTCGCCCACCTCGGGATGGCGTCCCTCAAGCACGTGACTGA
CACCGGCGTGGCCAGGCTCGGTTCCGGGTGCACAAGGCTGACCCATCTCG
ACATGTCC
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