mRNA_L-elsbetiae_contig192.5674.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig192.5674.1
Unique NamemRNA_L-elsbetiae_contig192.5674.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig192.5674.1 vs. uniprot
Match: D7FUE4_ECTSI (Aminotran_1_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUE4_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 2.750e-6
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 1 
Query:    1 RSAKPGRWRPGPQRTQYKEYARSALASG 84
            R+A PGRWRPGPQRTQYKEYARSALA+G
Sbjct:  121 RNAIPGRWRPGPQRTQYKEYARSALAAG 148
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BLAST of mRNA_L-elsbetiae_contig192.5674.1 vs. uniprot
Match: A0A836C7I6_9STRA (Pyridoxal phosphate-dependent transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7I6_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 9.370e-6
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:    1 RSAKPGRWRPGPQRTQYKEYARSALASGDPVT 96
            R A+PG+WRPGPQRTQYKEYARSA A+G   T
Sbjct:  103 RQAEPGKWRPGPQRTQYKEYARSAQAAGFSTT 134
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig192.5674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUE4_ECTSI2.750e-689.29Aminotran_1_2 domain-containing protein n=2 Tax=Ec... [more]
A0A836C7I6_9STRA9.370e-675.00Pyridoxal phosphate-dependent transferase n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig192contigL-elsbetiae_contig192:46987..47365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size380
Cds size357
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815797.0014672-CDS-L-elsbetiae_contig192:46986..473431622815797.0014672-CDS-L-elsbetiae_contig192:46986..47343Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig192 46987..47343 +
1691683108.8988433-CDS-L-elsbetiae_contig192:46986..473431691683108.8988433-CDS-L-elsbetiae_contig192:46986..47343Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig192 46987..47343 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815797.017817-UTR-L-elsbetiae_contig192:47343..473651622815797.017817-UTR-L-elsbetiae_contig192:47343..47365Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig192 47344..47365 +
1691683108.907648-UTR-L-elsbetiae_contig192:47343..473651691683108.907648-UTR-L-elsbetiae_contig192:47343..47365Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig192 47344..47365 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig192.5674.1prot_L-elsbetiae_contig192.5674.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig192 46987..47343 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig192.5674.1

>prot_L-elsbetiae_contig192.5674.1 ID=prot_L-elsbetiae_contig192.5674.1|Name=mRNA_L-elsbetiae_contig192.5674.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
RSAKPGRWRPGPQRTQYKEYARSALASGDPVTVGRVEVWRGFHRPHQITR
RFSGDKQVYRCCPFSPTSCIACGSGGSSWLWRPSRSRIARVKSTIIARFA
LFRLLSVAVSNAARKDSQ*
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mRNA from alignment at L-elsbetiae_contig192:46987..47365+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig192.5674.1 ID=mRNA_L-elsbetiae_contig192.5674.1|Name=mRNA_L-elsbetiae_contig192.5674.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=379bp|location=Sequence derived from alignment at L-elsbetiae_contig192:46987..47365+ (Laminarionema elsbetiae ELsaHSoW15)
CGCAGCGCCAAACCCGGCCGATGGCGCCCCGGGCCTCAGCGCACGCAGTA
CAAGGAGTACGCCCGTTCGGCCTTGGCGTCAGGTGACCCAGTCACAGTCG
GTCGGGTCGAGGTCTGGCGTGGCTTTCACCGCCCCCACCAGATAACGCGC
CGCTTTTCGGGGGACAAACAAGTTTATCGTTGCTGCCCGTTTAGTCCCAC
AAGCTGCATCGCTTGTGGTAGTGGCGGGAGTAGCTGGCTCTGGAGACCCA
GTCGAAGTCGTATTGCAAGGGTGAAAAGCACTATTATAGCACGTTTTGCG
TTGTTTCGCCTCCTGTCCGTGGCCGTTTCCAACGCAGCGCGAAAGGATTC
TCAATAAGGCATCGCCACCTTTGTGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig192:46987..47365+

>mRNA_L-elsbetiae_contig192.5674.1 ID=mRNA_L-elsbetiae_contig192.5674.1|Name=mRNA_L-elsbetiae_contig192.5674.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig192:46987..47365+ (Laminarionema elsbetiae ELsaHSoW15)
CGCAGCGCCAAACCCGGCCGATGGCGCCCCGGGCCTCAGCGCACGCAGTA
CAAGGAGTACGCCCGTTCGGCCTTGGCGTCAGGTGACCCAGTCACAGTCG
GTCGGGTCGAGGTCTGGCGTGGCTTTCACCGCCCCCACCAGATAACGCGC
CGCTTTTCGGGGGACAAACAAGTTTATCGTTGCTGCCCGTTTAGTCCCAC
AAGCTGCATCGCTTGTGGTAGTGGCGGGAGTAGCTGGCTCTGGAGACCCA
GTCGAAGTCGTATTGCAAGGGTGAAAAGCACTATTATAGCACGTTTTGCG
TTGTTTCGCCTCCTGTCCGTGGCCGTTTCCAACGCAGCGCGAAAGGATTC
TCAATAACGCAGCGCCAAACCCGGCCGATGGCGCCCCGGGCCTCAGCGCA
CGCAGTACAAGGAGTACGCCCGTTCGGCCTTGGCGTCAGGTGACCCAGTC
ACAGTCGGTCGGGTCGAGGTCTGGCGTGGCTTTCACCGCCCCCACCAGAT
AACGCGCCGCTTTTCGGGGGACAAACAAGTTTATCGTTGCTGCCCGTTTA
GTCCCACAAGCTGCATCGCTTGTGGTAGTGGCGGGAGTAGCTGGCTCTGG
AGACCCAGTCGAAGTCGTATTGCAAGGGTGAAAAGCACTATTATAGCACG
TTTTGCGTTGTTTCGCCTCCTGTCCGTGGCCGTTTCCAACGCAGCGCGAA
AGGATTCTCAATAA
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