Homology
BLAST of mRNA_L-elsbetiae_contig191.5627.1 vs. uniprot
Match:
A0A6H5JH11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH11_9PHAE)
HSP 1 Score: 102 bits (253), Expect = 7.920e-25
Identity = 56/67 (83.58%), Postives = 58/67 (86.57%), Query Frame = -2
Query: 208 PFLDSVMDETVAFVSGLVLTLVEFIACLVIYRLYRDGFITSRVRLVLNAVAVSCMAGKMCLALVAIF 408
PFLDSVMD TVAF S L LTLVEFIACLVIYRLYR+ +TSRVRLVL VAVSCM GKMCLALVAIF
Sbjct: 8 PFLDSVMDGTVAFASVLTLTLVEFIACLVIYRLYRNDDLTSRVRLVLTVVAVSCMVGKMCLALVAIF 74
BLAST of mRNA_L-elsbetiae_contig191.5627.1 vs. uniprot
Match:
A0A6H5JJ93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ93_9PHAE)
HSP 1 Score: 82.8 bits (203), Expect = 7.990e-16
Identity = 45/66 (68.18%), Postives = 50/66 (75.76%), Query Frame = -2
Query: 211 PFLDSVMDETVAFVSGLVLTLVEFIACLVIYRLYRDGFITSRVRLVLNAVAVSCMAGKMCLALVAI 408
PFLDS+MDET AF GLVLTLVEFI C+VIY +Y + + SR RLVL VA CM GKMCLA VAI
Sbjct: 326 PFLDSIMDETTAFGIGLVLTLVEFIVCMVIYHVYMNDDLPSRARLVLVTVASCCMVGKMCLAWVAI 391
BLAST of mRNA_L-elsbetiae_contig191.5627.1 vs. uniprot
Match:
A0A6H5JL60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL60_9PHAE)
HSP 1 Score: 79.3 bits (194), Expect = 1.150e-14
Identity = 43/66 (65.15%), Postives = 49/66 (74.24%), Query Frame = -2
Query: 211 PFLDSVMDETVAFVSGLVLTLVEFIACLVIYRLYRDGFITSRVRLVLNAVAVSCMAGKMCLALVAI 408
PFLDS+MDET AF +GLVLTLVEFI C+VIY +Y+ + S RLVL VA CM GKMCLA V I
Sbjct: 238 PFLDSIMDETTAFGTGLVLTLVEFILCVVIYHVYKHDDLPSGARLVLVTVASCCMVGKMCLAWVTI 303
BLAST of mRNA_L-elsbetiae_contig191.5627.1 vs. uniprot
Match:
A0A6H5KD04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD04_9PHAE)
HSP 1 Score: 71.6 bits (174), Expect = 6.590e-12
Identity = 40/67 (59.70%), Postives = 48/67 (71.64%), Query Frame = -2
Query: 208 PFLDSVMDETVAFVSGLVLTLVEFIACLVIYRLYRDGFITSRVRLVLNAVAVSCMAGKMCLALVAIF 408
PFLDSVMD + AF GLV+TLVEFI C+VIY LY + + +RL L VA SCM GK+ LA +AIF
Sbjct: 340 PFLDSVMDGSAAFGLGLVVTLVEFIVCVVIYHLYNHDDLPTNLRLGLYVVASSCMVGKLLLAALAIF 406
BLAST of mRNA_L-elsbetiae_contig191.5627.1 vs. uniprot
Match:
D8LFI4_ECTSI (Leucine Rich Repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFI4_ECTSI)
HSP 1 Score: 67.4 bits (163), Expect = 2.130e-10
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = -2
Query: 211 PFLDSVMDETVAFVSGLVLTLVEFIACLVIYRLYRDGFITSRVRLVLNAVAVSCMAGKMCLALVAI 408
PF+DS++D T AF +GLVLTLVEF+AC+V Y L+ + R L +++ CM GKM LAL+AI
Sbjct: 463 PFIDSILDGTRAFGAGLVLTLVEFVACIVTYHLFSSDHLPPHARWTLTIISICCMVGKMRLALLAI 528
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig191.5627.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 5
0 1 Expect = 7.92e-25 / Id = 83.58 Expect = 7.99e-16 / Id = 68.18 Expect = 1.15e-14 / Id = 65.15 Expect = 6.59e-12 / Id = 59.70 Expect = 2.13e-10 / Id = 51.52 Sequence A0A6H5JH11_9PHAE A0A6H5JJ93_9PHAE A0A6H5JL60_9PHAE A0A6H5KD04_9PHAE D8LFI4_ECTSI
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Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815793.5663438-UTR-L-elsbetiae_contig191:34157..34221 1622815793.5663438-UTR-L-elsbetiae_contig191:34157..34221 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig191 34158..34221 +
1691683106.695495-UTR-L-elsbetiae_contig191:34157..34221 1691683106.695495-UTR-L-elsbetiae_contig191:34157..34221 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig191 34158..34221 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815793.5770147-CDS-L-elsbetiae_contig191:34221..34566 1622815793.5770147-CDS-L-elsbetiae_contig191:34221..34566 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig191 34222..34566 +
1691683106.7088122-CDS-L-elsbetiae_contig191:34221..34566 1691683106.7088122-CDS-L-elsbetiae_contig191:34221..34566 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig191 34222..34566 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig191.5627.1
>prot_L-elsbetiae_contig191.5627.1 ID=prot_L-elsbetiae_contig191.5627.1|Name=mRNA_L-elsbetiae_contig191.5627.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MWTRHVWQAVVASAPKVLFHTQPSPPSCRHLRTCYRFVRDYPTRIHERNI ATSAKHILPAMQLTATAFSTSRTREVIKPSLYKRYITKHAMNSTRVSTSP DTNATVSSMTESRNG back to top mRNA from alignment at L-elsbetiae_contig191:34158..34566+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig191.5627.1 ID=mRNA_L-elsbetiae_contig191.5627.1|Name=mRNA_L-elsbetiae_contig191.5627.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=409bp|location=Sequence derived from alignment at L-elsbetiae_contig191:34158..34566+ (Laminarionema elsbetiae ELsaHSoW15)ATCCCATACACAGACTCTTAAGCATCCTCTACCTTGGCGTCTCCGCTAGC
CGAACTCGTTGCCA ATGTGGACACGGCATGTGTGGCAGGCTGTGGTTGCC
TCCGCTCCAAAGGTGCTATTCCACACTCAACCTTCGCCTCCTTCATGCCG
TCATCTCCGAACCTGCTACAGATTCGTCCGTGACTACCCCACCCGTATCC
ACGAAAGGAATATCGCTACCAGCGCCAAACACATCTTACCCGCCATGCAA
CTAACGGCCACCGCATTTAGCACCAGCCGCACGCGCGAGGTTATAAAACC
GTCTCTGTACAAGCGGTATATCACCAAGCACGCGATGAACTCCACGAGGG
TCAGCACTAGTCCGGACACGAACGCTACCGTCTCGTCCATGACCGAGTCC
AGAAACGGC back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig191:34158..34566+
>mRNA_L-elsbetiae_contig191.5627.1 ID=mRNA_L-elsbetiae_contig191.5627.1|Name=mRNA_L-elsbetiae_contig191.5627.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig191:34158..34566+ (Laminarionema elsbetiae ELsaHSoW15) ATGTGGACACGGCATGTGTGGCAGGCTGTGGTTGCCTCCGCTCCAAAGGT GCTATTCCACACTCAACCTTCGCCTCCTTCATGCCGTCATCTCCGAACCT GCTACAGATTCGTCCGTGACTACCCCACCCGTATCCACGAAAGGAATATC GCTACCAGCGCCAAACACATCTTACCCGCCATGCAACTAACGGCCACCGC ATTTAGCACCAGCCGCACGCGCGAGGTTATAAAACCGTCTCTGTACAAGC GGTATATCACCAAGCACGCGATGAACTCCACGAGGGTCAGCACTAGTCCG GACACGAACGCTACCGTCTCGTCCATGACCGAGTCCAGAAACGGCATGTG GACACGGCATGTGTGGCAGGCTGTGGTTGCCTCCGCTCCAAAGGTGCTAT TCCACACTCAACCTTCGCCTCCTTCATGCCGTCATCTCCGAACCTGCTAC AGATTCGTCCGTGACTACCCCACCCGTATCCACGAAAGGAATATCGCTAC CAGCGCCAAACACATCTTACCCGCCATGCAACTAACGGCCACCGCATTTA GCACCAGCCGCACGCGCGAGGTTATAAAACCGTCTCTGTACAAGCGGTAT ATCACCAAGCACGCGATGAACTCCACGAGGGTCAGCACTAGTCCGGACAC GAACGCTACCGTCTCGTCCATGACCGAGTCCAGAAACGGC back to top