mRNA_L-elsbetiae_contig191.5627.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig191.5627.1
Unique NamemRNA_L-elsbetiae_contig191.5627.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig191.5627.1 vs. uniprot
Match: A0A6H5JH11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH11_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 7.920e-25
Identity = 56/67 (83.58%), Postives = 58/67 (86.57%), Query Frame = -2 
Query:  208 PFLDSVMDETVAFVSGLVLTLVEFIACLVIYRLYRDGFITSRVRLVLNAVAVSCMAGKMCLALVAIF 408
            PFLDSVMD TVAF S L LTLVEFIACLVIYRLYR+  +TSRVRLVL  VAVSCM GKMCLALVAIF
Sbjct:    8 PFLDSVMDGTVAFASVLTLTLVEFIACLVIYRLYRNDDLTSRVRLVLTVVAVSCMVGKMCLALVAIF 74
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BLAST of mRNA_L-elsbetiae_contig191.5627.1 vs. uniprot
Match: A0A6H5JJ93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ93_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 7.990e-16
Identity = 45/66 (68.18%), Postives = 50/66 (75.76%), Query Frame = -2 
Query:  211 PFLDSVMDETVAFVSGLVLTLVEFIACLVIYRLYRDGFITSRVRLVLNAVAVSCMAGKMCLALVAI 408
            PFLDS+MDET AF  GLVLTLVEFI C+VIY +Y +  + SR RLVL  VA  CM GKMCLA VAI
Sbjct:  326 PFLDSIMDETTAFGIGLVLTLVEFIVCMVIYHVYMNDDLPSRARLVLVTVASCCMVGKMCLAWVAI 391
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BLAST of mRNA_L-elsbetiae_contig191.5627.1 vs. uniprot
Match: A0A6H5JL60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL60_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.150e-14
Identity = 43/66 (65.15%), Postives = 49/66 (74.24%), Query Frame = -2 
Query:  211 PFLDSVMDETVAFVSGLVLTLVEFIACLVIYRLYRDGFITSRVRLVLNAVAVSCMAGKMCLALVAI 408
            PFLDS+MDET AF +GLVLTLVEFI C+VIY +Y+   + S  RLVL  VA  CM GKMCLA V I
Sbjct:  238 PFLDSIMDETTAFGTGLVLTLVEFILCVVIYHVYKHDDLPSGARLVLVTVASCCMVGKMCLAWVTI 303
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BLAST of mRNA_L-elsbetiae_contig191.5627.1 vs. uniprot
Match: A0A6H5KD04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD04_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 6.590e-12
Identity = 40/67 (59.70%), Postives = 48/67 (71.64%), Query Frame = -2 
Query:  208 PFLDSVMDETVAFVSGLVLTLVEFIACLVIYRLYRDGFITSRVRLVLNAVAVSCMAGKMCLALVAIF 408
            PFLDSVMD + AF  GLV+TLVEFI C+VIY LY    + + +RL L  VA SCM GK+ LA +AIF
Sbjct:  340 PFLDSVMDGSAAFGLGLVVTLVEFIVCVVIYHLYNHDDLPTNLRLGLYVVASSCMVGKLLLAALAIF 406
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BLAST of mRNA_L-elsbetiae_contig191.5627.1 vs. uniprot
Match: D8LFI4_ECTSI (Leucine Rich Repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFI4_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 2.130e-10
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = -2 
Query:  211 PFLDSVMDETVAFVSGLVLTLVEFIACLVIYRLYRDGFITSRVRLVLNAVAVSCMAGKMCLALVAI 408
            PF+DS++D T AF +GLVLTLVEF+AC+V Y L+    +    R  L  +++ CM GKM LAL+AI
Sbjct:  463 PFIDSILDGTRAFGAGLVLTLVEFVACIVTYHLFSSDHLPPHARWTLTIISICCMVGKMRLALLAI 528
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig191.5627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JH11_9PHAE7.920e-2583.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJ93_9PHAE7.990e-1668.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL60_9PHAE1.150e-1465.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD04_9PHAE6.590e-1259.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFI4_ECTSI2.130e-1051.52Leucine Rich Repeat protein n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig191contigL-elsbetiae_contig191:34158..34566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size409
Cds size345
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815793.5663438-UTR-L-elsbetiae_contig191:34157..342211622815793.5663438-UTR-L-elsbetiae_contig191:34157..34221Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig191 34158..34221 +
1691683106.695495-UTR-L-elsbetiae_contig191:34157..342211691683106.695495-UTR-L-elsbetiae_contig191:34157..34221Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig191 34158..34221 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815793.5770147-CDS-L-elsbetiae_contig191:34221..345661622815793.5770147-CDS-L-elsbetiae_contig191:34221..34566Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig191 34222..34566 +
1691683106.7088122-CDS-L-elsbetiae_contig191:34221..345661691683106.7088122-CDS-L-elsbetiae_contig191:34221..34566Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig191 34222..34566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig191.5627.1prot_L-elsbetiae_contig191.5627.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig191 34222..34566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig191.5627.1

>prot_L-elsbetiae_contig191.5627.1 ID=prot_L-elsbetiae_contig191.5627.1|Name=mRNA_L-elsbetiae_contig191.5627.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MWTRHVWQAVVASAPKVLFHTQPSPPSCRHLRTCYRFVRDYPTRIHERNI
ATSAKHILPAMQLTATAFSTSRTREVIKPSLYKRYITKHAMNSTRVSTSP
DTNATVSSMTESRNG
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mRNA from alignment at L-elsbetiae_contig191:34158..34566+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig191.5627.1 ID=mRNA_L-elsbetiae_contig191.5627.1|Name=mRNA_L-elsbetiae_contig191.5627.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=409bp|location=Sequence derived from alignment at L-elsbetiae_contig191:34158..34566+ (Laminarionema elsbetiae ELsaHSoW15)
ATCCCATACACAGACTCTTAAGCATCCTCTACCTTGGCGTCTCCGCTAGC
CGAACTCGTTGCCAATGTGGACACGGCATGTGTGGCAGGCTGTGGTTGCC
TCCGCTCCAAAGGTGCTATTCCACACTCAACCTTCGCCTCCTTCATGCCG
TCATCTCCGAACCTGCTACAGATTCGTCCGTGACTACCCCACCCGTATCC
ACGAAAGGAATATCGCTACCAGCGCCAAACACATCTTACCCGCCATGCAA
CTAACGGCCACCGCATTTAGCACCAGCCGCACGCGCGAGGTTATAAAACC
GTCTCTGTACAAGCGGTATATCACCAAGCACGCGATGAACTCCACGAGGG
TCAGCACTAGTCCGGACACGAACGCTACCGTCTCGTCCATGACCGAGTCC
AGAAACGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig191:34158..34566+

>mRNA_L-elsbetiae_contig191.5627.1 ID=mRNA_L-elsbetiae_contig191.5627.1|Name=mRNA_L-elsbetiae_contig191.5627.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig191:34158..34566+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGACACGGCATGTGTGGCAGGCTGTGGTTGCCTCCGCTCCAAAGGT
GCTATTCCACACTCAACCTTCGCCTCCTTCATGCCGTCATCTCCGAACCT
GCTACAGATTCGTCCGTGACTACCCCACCCGTATCCACGAAAGGAATATC
GCTACCAGCGCCAAACACATCTTACCCGCCATGCAACTAACGGCCACCGC
ATTTAGCACCAGCCGCACGCGCGAGGTTATAAAACCGTCTCTGTACAAGC
GGTATATCACCAAGCACGCGATGAACTCCACGAGGGTCAGCACTAGTCCG
GACACGAACGCTACCGTCTCGTCCATGACCGAGTCCAGAAACGGCATGTG
GACACGGCATGTGTGGCAGGCTGTGGTTGCCTCCGCTCCAAAGGTGCTAT
TCCACACTCAACCTTCGCCTCCTTCATGCCGTCATCTCCGAACCTGCTAC
AGATTCGTCCGTGACTACCCCACCCGTATCCACGAAAGGAATATCGCTAC
CAGCGCCAAACACATCTTACCCGCCATGCAACTAACGGCCACCGCATTTA
GCACCAGCCGCACGCGCGAGGTTATAAAACCGTCTCTGTACAAGCGGTAT
ATCACCAAGCACGCGATGAACTCCACGAGGGTCAGCACTAGTCCGGACAC
GAACGCTACCGTCTCGTCCATGACCGAGTCCAGAAACGGC
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