mRNA_L-elsbetiae_contig19089.5621.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig19089.5621.1 vs. uniprot
Match: A0A8E6D2H5_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D2H5_9PHAE) HSP 1 Score: 175 bits (443), Expect = 2.820e-54 Identity = 86/123 (69.92%), Postives = 107/123 (86.99%), Query Frame = 1 Query: 10 NNLVIKINSTQIINSIEKPYIKKDIPKILVGDNVKIGVLIREGNKERIQYFQGLVICQRNSGINKTIMVRKVIQGIGVERIFLLNSPKLESITIQKSSQIRRSKLYYLRYLAGKASRLKQKFS 378 NNL+I NST++ S+EKP+IK +P + GD VKIGVLI+EGNKERIQY+QG+VI Q N GINKTI+VR++IQGIGVER FLL+SPK+ESI I+KSS++RRSKLYYLR L+GKASRLKQ+F+ Sbjct: 6 NNLIISFNSTKVFQSLEKPFIKTSLPILSPGDTVKIGVLIKEGNKERIQYYQGVVIAQNNRGINKTILVRRIIQGIGVERTFLLHSPKVESIEIKKSSRVRRSKLYYLRALSGKASRLKQRFN 128
BLAST of mRNA_L-elsbetiae_contig19089.5621.1 vs. uniprot
Match: A0A7S6UA05_9STRA (50S ribosomal protein L19, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA05_9STRA) HSP 1 Score: 162 bits (410), Expect = 2.640e-49 Identity = 76/122 (62.30%), Postives = 103/122 (84.43%), Query Frame = 1 Query: 13 NLVIKINSTQIINSIEKPYIKKDIPKILVGDNVKIGVLIREGNKERIQYFQGLVICQRNSGINKTIMVRKVIQGIGVERIFLLNSPKLESITIQKSSQIRRSKLYYLRYLAGKASRLKQKFS 378 N V+ N +I S+E Y K D+P + +GD VKIGVLI+EG KERIQY+QG++I ++N+GINKTI+VR+V+QGIGVER+FL++SPKL SI I++SS++R+SKLYYLR L+GKASRLKQ+F+ Sbjct: 3 NFVVTFNKNSLIQSVEHKYYKSDLPTLFIGDTVKIGVLIKEGTKERIQYYQGIIIAKQNTGINKTIIVRRVLQGIGVERMFLIHSPKLNSIEIKRSSRVRKSKLYYLRGLSGKASRLKQRFN 124
BLAST of mRNA_L-elsbetiae_contig19089.5621.1 vs. uniprot
Match: A0A2U9NPS4_9STRA (50S ribosomal protein L19, chloroplastic n=1 Tax=Attheya longicornis TaxID=451786 RepID=A0A2U9NPS4_9STRA) HSP 1 Score: 158 bits (399), Expect = 1.100e-47 Identity = 75/119 (63.03%), Postives = 102/119 (85.71%), Query Frame = 1 Query: 19 VIKINSTQIINSIEKPYIKKDIPKILVGDNVKIGVLIREGNKERIQYFQGLVICQRNSGINKTIMVRKVIQGIGVERIFLLNSPKLESITIQKSSQIRRSKLYYLRYLAGKASRLKQKF 375 + K+N+ + +N++E +IKK +PK+ +GDNVKIGV I EGNKERIQ+++G VI ++NS IN TI VRKV+QGIG+ERIFL++SPK++SIT+ +SS++RRSKLYYLR L GKASRLKQ+F Sbjct: 1 MFKLNTEETLNTLESTFIKKSLPKVSIGDNVKIGVKIIEGNKERIQFYEGTVIAKKNSSINCTITVRKVLQGIGIERIFLIHSPKVDSITVLRSSKVRRSKLYYLRNLKGKASRLKQRF 119
BLAST of mRNA_L-elsbetiae_contig19089.5621.1 vs. uniprot
Match: A0A8F0FAK4_9PHAE (Ribosomal protein L19 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAK4_9PHAE) HSP 1 Score: 157 bits (397), Expect = 3.030e-47 Identity = 78/116 (67.24%), Postives = 98/116 (84.48%), Query Frame = 1 Query: 28 INSTQIINSIEKPYIKKDIPKILVGDNVKIGVLIREGNKERIQYFQGLVICQRNSGINKTIMVRKVIQGIGVERIFLLNSPKLESITIQKSSQIRRSKLYYLRYLAGKASRLKQKF 375 +NS +IIN +E+ KKDIPKI VGD VKIG+LI+EGNKERIQY+QG+++ ++NSGIN I VRKV QGIGVER FL++SPK ESIT+ KSS++RRSKLYYLR + GK SRLK++F Sbjct: 12 LNSEKIINLVEEAQKKKDIPKIFVGDTVKIGILIKEGNKERIQYYQGIILGKKNSGINLMISVRKVFQGIGVERNFLIHSPKFESITVIKSSRVRRSKLYYLRNIIGKKSRLKERF 127
BLAST of mRNA_L-elsbetiae_contig19089.5621.1 vs. uniprot
Match: A0A023HAL8_9STRA (50S ribosomal protein L19, chloroplastic n=1 Tax=Didymosphenia geminata TaxID=1115533 RepID=A0A023HAL8_9STRA) HSP 1 Score: 156 bits (395), Expect = 4.470e-47 Identity = 69/120 (57.50%), Postives = 103/120 (85.83%), Query Frame = 1 Query: 19 VIKINSTQIINSIEKPYIKKDIPKILVGDNVKIGVLIREGNKERIQYFQGLVICQRNSGINKTIMVRKVIQGIGVERIFLLNSPKLESITIQKSSQIRRSKLYYLRYLAGKASRLKQKFS 378 ++K+N+ + I ++E ++KKD+P + +GDN+KIGV I EGNKER+Q+++G ++ ++NS IN TI VRK++QG+G+ER+FL++SPK+ESIT+ KSS++RR+KLYYLR L GKASRLKQKF+ Sbjct: 1 MLKLNTQKTIRNVENSFLKKDLPTLQIGDNIKIGVKIVEGNKERVQFYEGTILAKKNSSINTTITVRKILQGVGIERVFLIHSPKIESITVLKSSKVRRAKLYYLRDLKGKASRLKQKFN 120
BLAST of mRNA_L-elsbetiae_contig19089.5621.1 vs. uniprot
Match: A0A516Z9W5_9STRA (50S ribosomal protein L19, chloroplastic n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A516Z9W5_9STRA) HSP 1 Score: 155 bits (392), Expect = 1.450e-46 Identity = 74/121 (61.16%), Postives = 102/121 (84.30%), Query Frame = 1 Query: 13 NLVIKINSTQIINSIEKPYIKKDIPKILVGDNVKIGVLIREGNKERIQYFQGLVICQRNSGINKTIMVRKVIQGIGVERIFLLNSPKLESITIQKSSQIRRSKLYYLRYLAGKASRLKQKF 375 N + KIN+T ++N +E YIK+D+P + VGD V++GV IREG K R Q ++G++I Q+NSGINKTI VR+V+QGIGVER FLL+SPK+++I I++SS++RRSKLYYLR L+GKA+RLKQ+F Sbjct: 4 NEITKINNTALLNKVESEYIKEDLPNVRVGDTVRLGVEIREGKKTRTQAYEGVIISQKNSGINKTITVRRVMQGIGVERCFLLHSPKIKTIEIKRSSKVRRSKLYYLRELSGKATRLKQRF 124
BLAST of mRNA_L-elsbetiae_contig19089.5621.1 vs. uniprot
Match: A0A8F5PLI7_9STRA (50S ribosomal protein L19, chloroplastic n=4 Tax=Chaetoceros TaxID=49237 RepID=A0A8F5PLI7_9STRA) HSP 1 Score: 155 bits (391), Expect = 1.820e-46 Identity = 73/119 (61.34%), Postives = 100/119 (84.03%), Query Frame = 1 Query: 19 VIKINSTQIINSIEKPYIKKDIPKILVGDNVKIGVLIREGNKERIQYFQGLVICQRNSGINKTIMVRKVIQGIGVERIFLLNSPKLESITIQKSSQIRRSKLYYLRYLAGKASRLKQKF 375 ++K+N Q I ++ K ++KKD+PKI +GD+VKIGV I EGNKER+Q+++G +I ++NS IN TI VRKV+QGIG+ERIFL++SPK++SI + +SS++RRSKLYYLR L GKASRLKQ F Sbjct: 1 MVKLNKQQTIENLHKHFLKKDLPKISIGDSVKIGVKIIEGNKERVQFYEGTIIAKKNSSINTTITVRKVLQGIGIERIFLIHSPKIDSIEVLRSSKVRRSKLYYLRNLKGKASRLKQAF 119
BLAST of mRNA_L-elsbetiae_contig19089.5621.1 vs. uniprot
Match: A0A023JEN2_9STRA (50S ribosomal protein L19, chloroplastic n=1 Tax=Eunotia naegelii TaxID=1458866 RepID=A0A023JEN2_9STRA) HSP 1 Score: 154 bits (389), Expect = 3.550e-46 Identity = 76/119 (63.87%), Postives = 99/119 (83.19%), Query Frame = 1 Query: 19 VIKINSTQIINSIEKPYIKKDIPKILVGDNVKIGVLIREGNKERIQYFQGLVICQRNSGINKTIMVRKVIQGIGVERIFLLNSPKLESITIQKSSQIRRSKLYYLRYLAGKASRLKQKF 375 + K+NS + IN +EK ++KKD+P I +GD VKIGV I EGNKERIQ+++G VI ++NS IN TI VRK++QGIGVERIFL++SPK++SI I +SS++RRSKLYYLR L GKA+RLKQ F Sbjct: 1 MFKLNSQKTINDLEKNFVKKDLPIISIGDTVKIGVKIIEGNKERIQFYEGTVIAKKNSSINTTITVRKILQGIGVERIFLVHSPKIDSINILRSSKVRRSKLYYLRNLKGKATRLKQVF 119
BLAST of mRNA_L-elsbetiae_contig19089.5621.1 vs. uniprot
Match: A0A8F0WGV8_9STRA (50S ribosomal protein L19, chloroplastic n=1 Tax=Tryblionella apiculata TaxID=1003145 RepID=A0A8F0WGV8_9STRA) HSP 1 Score: 154 bits (389), Expect = 3.660e-46 Identity = 75/117 (64.10%), Postives = 99/117 (84.62%), Query Frame = 1 Query: 25 KINSTQIINSIEKPYIKKDIPKILVGDNVKIGVLIREGNKERIQYFQGLVICQRNSGINKTIMVRKVIQGIGVERIFLLNSPKLESITIQKSSQIRRSKLYYLRYLAGKASRLKQKF 375 K+N Q IN++EK ++K+++P I +GDNVKIGV I EGNKER+Q+++G VI ++NS IN TI VRK +QGIG+ERIFL++SPKLESIT+ +SS++RRSKLYYLR L GKASRLK+ F Sbjct: 3 KLNIQQTINNVEKGFLKENLPVIKIGDNVKIGVKIIEGNKERVQFYEGTVIAKKNSSINTTITVRKTLQGIGIERIFLIHSPKLESITVLRSSKVRRSKLYYLRNLKGKASRLKEIF 119
BLAST of mRNA_L-elsbetiae_contig19089.5621.1 vs. uniprot
Match: A0A8F0F7M0_9PHAE (Ribosomal protein L19 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7M0_9PHAE) HSP 1 Score: 154 bits (388), Expect = 7.090e-46 Identity = 80/127 (62.99%), Postives = 101/127 (79.53%), Query Frame = 1 Query: 1 MTNNNL--VIKINSTQIINSIEKPYIKKDIPKILVGDNVKIGVLIREGNKERIQYFQGLVICQRNSGINKTIMVRKVIQGIGVERIFLLNSPKLESITIQKSSQIRRSKLYYLRYLAGKASRLKQKF 375 M N+NL V + + +I++ +E YIKKD+ KI VGD VKIGV I+EGNKERIQY+QG+++ + NSG+N TI VRKV QGIGVER FL++SPK ESI I KSS++RRSKLYYLR + GK SRLKQ+F Sbjct: 1 MKNSNLRQVPLLPTAKIMDFVESTYIKKDVSKIFVGDTVKIGVFIKEGNKERIQYYQGIILGKNNSGVNLTISVRKVFQGIGVERRFLIHSPKFESIEIIKSSRVRRSKLYYLRSIVGKGSRLKQRF 127 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19089.5621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig19089.5621.1 >prot_L-elsbetiae_contig19089.5621.1 ID=prot_L-elsbetiae_contig19089.5621.1|Name=mRNA_L-elsbetiae_contig19089.5621.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp MTNNNLVIKINSTQIINSIEKPYIKKDIPKILVGDNVKIGVLIREGNKERback to top mRNA from alignment at L-elsbetiae_contig19089:80..460+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig19089.5621.1 ID=mRNA_L-elsbetiae_contig19089.5621.1|Name=mRNA_L-elsbetiae_contig19089.5621.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=381bp|location=Sequence derived from alignment at L-elsbetiae_contig19089:80..460+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig19089:80..460+ >mRNA_L-elsbetiae_contig19089.5621.1 ID=mRNA_L-elsbetiae_contig19089.5621.1|Name=mRNA_L-elsbetiae_contig19089.5621.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig19089:80..460+ (Laminarionema elsbetiae ELsaHSoW15)back to top |