mRNA_L-elsbetiae_contig19089.5621.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19089.5621.1
Unique NamemRNA_L-elsbetiae_contig19089.5621.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig19089.5621.1 vs. uniprot
Match: A0A8E6D2H5_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D2H5_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 2.820e-54
Identity = 86/123 (69.92%), Postives = 107/123 (86.99%), Query Frame = 1
Query:   10 NNLVIKINSTQIINSIEKPYIKKDIPKILVGDNVKIGVLIREGNKERIQYFQGLVICQRNSGINKTIMVRKVIQGIGVERIFLLNSPKLESITIQKSSQIRRSKLYYLRYLAGKASRLKQKFS 378
            NNL+I  NST++  S+EKP+IK  +P +  GD VKIGVLI+EGNKERIQY+QG+VI Q N GINKTI+VR++IQGIGVER FLL+SPK+ESI I+KSS++RRSKLYYLR L+GKASRLKQ+F+
Sbjct:    6 NNLIISFNSTKVFQSLEKPFIKTSLPILSPGDTVKIGVLIKEGNKERIQYYQGVVIAQNNRGINKTILVRRIIQGIGVERTFLLHSPKVESIEIKKSSRVRRSKLYYLRALSGKASRLKQRFN 128          
BLAST of mRNA_L-elsbetiae_contig19089.5621.1 vs. uniprot
Match: A0A7S6UA05_9STRA (50S ribosomal protein L19, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA05_9STRA)

HSP 1 Score: 162 bits (410), Expect = 2.640e-49
Identity = 76/122 (62.30%), Postives = 103/122 (84.43%), Query Frame = 1
Query:   13 NLVIKINSTQIINSIEKPYIKKDIPKILVGDNVKIGVLIREGNKERIQYFQGLVICQRNSGINKTIMVRKVIQGIGVERIFLLNSPKLESITIQKSSQIRRSKLYYLRYLAGKASRLKQKFS 378
            N V+  N   +I S+E  Y K D+P + +GD VKIGVLI+EG KERIQY+QG++I ++N+GINKTI+VR+V+QGIGVER+FL++SPKL SI I++SS++R+SKLYYLR L+GKASRLKQ+F+
Sbjct:    3 NFVVTFNKNSLIQSVEHKYYKSDLPTLFIGDTVKIGVLIKEGTKERIQYYQGIIIAKQNTGINKTIIVRRVLQGIGVERMFLIHSPKLNSIEIKRSSRVRKSKLYYLRGLSGKASRLKQRFN 124          
BLAST of mRNA_L-elsbetiae_contig19089.5621.1 vs. uniprot
Match: A0A2U9NPS4_9STRA (50S ribosomal protein L19, chloroplastic n=1 Tax=Attheya longicornis TaxID=451786 RepID=A0A2U9NPS4_9STRA)

HSP 1 Score: 158 bits (399), Expect = 1.100e-47
Identity = 75/119 (63.03%), Postives = 102/119 (85.71%), Query Frame = 1
Query:   19 VIKINSTQIINSIEKPYIKKDIPKILVGDNVKIGVLIREGNKERIQYFQGLVICQRNSGINKTIMVRKVIQGIGVERIFLLNSPKLESITIQKSSQIRRSKLYYLRYLAGKASRLKQKF 375
            + K+N+ + +N++E  +IKK +PK+ +GDNVKIGV I EGNKERIQ+++G VI ++NS IN TI VRKV+QGIG+ERIFL++SPK++SIT+ +SS++RRSKLYYLR L GKASRLKQ+F
Sbjct:    1 MFKLNTEETLNTLESTFIKKSLPKVSIGDNVKIGVKIIEGNKERIQFYEGTVIAKKNSSINCTITVRKVLQGIGIERIFLIHSPKVDSITVLRSSKVRRSKLYYLRNLKGKASRLKQRF 119          
BLAST of mRNA_L-elsbetiae_contig19089.5621.1 vs. uniprot
Match: A0A8F0FAK4_9PHAE (Ribosomal protein L19 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAK4_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 3.030e-47
Identity = 78/116 (67.24%), Postives = 98/116 (84.48%), Query Frame = 1
Query:   28 INSTQIINSIEKPYIKKDIPKILVGDNVKIGVLIREGNKERIQYFQGLVICQRNSGINKTIMVRKVIQGIGVERIFLLNSPKLESITIQKSSQIRRSKLYYLRYLAGKASRLKQKF 375
            +NS +IIN +E+   KKDIPKI VGD VKIG+LI+EGNKERIQY+QG+++ ++NSGIN  I VRKV QGIGVER FL++SPK ESIT+ KSS++RRSKLYYLR + GK SRLK++F
Sbjct:   12 LNSEKIINLVEEAQKKKDIPKIFVGDTVKIGILIKEGNKERIQYYQGIILGKKNSGINLMISVRKVFQGIGVERNFLIHSPKFESITVIKSSRVRRSKLYYLRNIIGKKSRLKERF 127          
BLAST of mRNA_L-elsbetiae_contig19089.5621.1 vs. uniprot
Match: A0A023HAL8_9STRA (50S ribosomal protein L19, chloroplastic n=1 Tax=Didymosphenia geminata TaxID=1115533 RepID=A0A023HAL8_9STRA)

HSP 1 Score: 156 bits (395), Expect = 4.470e-47
Identity = 69/120 (57.50%), Postives = 103/120 (85.83%), Query Frame = 1
Query:   19 VIKINSTQIINSIEKPYIKKDIPKILVGDNVKIGVLIREGNKERIQYFQGLVICQRNSGINKTIMVRKVIQGIGVERIFLLNSPKLESITIQKSSQIRRSKLYYLRYLAGKASRLKQKFS 378
            ++K+N+ + I ++E  ++KKD+P + +GDN+KIGV I EGNKER+Q+++G ++ ++NS IN TI VRK++QG+G+ER+FL++SPK+ESIT+ KSS++RR+KLYYLR L GKASRLKQKF+
Sbjct:    1 MLKLNTQKTIRNVENSFLKKDLPTLQIGDNIKIGVKIVEGNKERVQFYEGTILAKKNSSINTTITVRKILQGVGIERVFLIHSPKIESITVLKSSKVRRAKLYYLRDLKGKASRLKQKFN 120          
BLAST of mRNA_L-elsbetiae_contig19089.5621.1 vs. uniprot
Match: A0A516Z9W5_9STRA (50S ribosomal protein L19, chloroplastic n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A516Z9W5_9STRA)

HSP 1 Score: 155 bits (392), Expect = 1.450e-46
Identity = 74/121 (61.16%), Postives = 102/121 (84.30%), Query Frame = 1
Query:   13 NLVIKINSTQIINSIEKPYIKKDIPKILVGDNVKIGVLIREGNKERIQYFQGLVICQRNSGINKTIMVRKVIQGIGVERIFLLNSPKLESITIQKSSQIRRSKLYYLRYLAGKASRLKQKF 375
            N + KIN+T ++N +E  YIK+D+P + VGD V++GV IREG K R Q ++G++I Q+NSGINKTI VR+V+QGIGVER FLL+SPK+++I I++SS++RRSKLYYLR L+GKA+RLKQ+F
Sbjct:    4 NEITKINNTALLNKVESEYIKEDLPNVRVGDTVRLGVEIREGKKTRTQAYEGVIISQKNSGINKTITVRRVMQGIGVERCFLLHSPKIKTIEIKRSSKVRRSKLYYLRELSGKATRLKQRF 124          
BLAST of mRNA_L-elsbetiae_contig19089.5621.1 vs. uniprot
Match: A0A8F5PLI7_9STRA (50S ribosomal protein L19, chloroplastic n=4 Tax=Chaetoceros TaxID=49237 RepID=A0A8F5PLI7_9STRA)

HSP 1 Score: 155 bits (391), Expect = 1.820e-46
Identity = 73/119 (61.34%), Postives = 100/119 (84.03%), Query Frame = 1
Query:   19 VIKINSTQIINSIEKPYIKKDIPKILVGDNVKIGVLIREGNKERIQYFQGLVICQRNSGINKTIMVRKVIQGIGVERIFLLNSPKLESITIQKSSQIRRSKLYYLRYLAGKASRLKQKF 375
            ++K+N  Q I ++ K ++KKD+PKI +GD+VKIGV I EGNKER+Q+++G +I ++NS IN TI VRKV+QGIG+ERIFL++SPK++SI + +SS++RRSKLYYLR L GKASRLKQ F
Sbjct:    1 MVKLNKQQTIENLHKHFLKKDLPKISIGDSVKIGVKIIEGNKERVQFYEGTIIAKKNSSINTTITVRKVLQGIGIERIFLIHSPKIDSIEVLRSSKVRRSKLYYLRNLKGKASRLKQAF 119          
BLAST of mRNA_L-elsbetiae_contig19089.5621.1 vs. uniprot
Match: A0A023JEN2_9STRA (50S ribosomal protein L19, chloroplastic n=1 Tax=Eunotia naegelii TaxID=1458866 RepID=A0A023JEN2_9STRA)

HSP 1 Score: 154 bits (389), Expect = 3.550e-46
Identity = 76/119 (63.87%), Postives = 99/119 (83.19%), Query Frame = 1
Query:   19 VIKINSTQIINSIEKPYIKKDIPKILVGDNVKIGVLIREGNKERIQYFQGLVICQRNSGINKTIMVRKVIQGIGVERIFLLNSPKLESITIQKSSQIRRSKLYYLRYLAGKASRLKQKF 375
            + K+NS + IN +EK ++KKD+P I +GD VKIGV I EGNKERIQ+++G VI ++NS IN TI VRK++QGIGVERIFL++SPK++SI I +SS++RRSKLYYLR L GKA+RLKQ F
Sbjct:    1 MFKLNSQKTINDLEKNFVKKDLPIISIGDTVKIGVKIIEGNKERIQFYEGTVIAKKNSSINTTITVRKILQGIGVERIFLVHSPKIDSINILRSSKVRRSKLYYLRNLKGKATRLKQVF 119          
BLAST of mRNA_L-elsbetiae_contig19089.5621.1 vs. uniprot
Match: A0A8F0WGV8_9STRA (50S ribosomal protein L19, chloroplastic n=1 Tax=Tryblionella apiculata TaxID=1003145 RepID=A0A8F0WGV8_9STRA)

HSP 1 Score: 154 bits (389), Expect = 3.660e-46
Identity = 75/117 (64.10%), Postives = 99/117 (84.62%), Query Frame = 1
Query:   25 KINSTQIINSIEKPYIKKDIPKILVGDNVKIGVLIREGNKERIQYFQGLVICQRNSGINKTIMVRKVIQGIGVERIFLLNSPKLESITIQKSSQIRRSKLYYLRYLAGKASRLKQKF 375
            K+N  Q IN++EK ++K+++P I +GDNVKIGV I EGNKER+Q+++G VI ++NS IN TI VRK +QGIG+ERIFL++SPKLESIT+ +SS++RRSKLYYLR L GKASRLK+ F
Sbjct:    3 KLNIQQTINNVEKGFLKENLPVIKIGDNVKIGVKIIEGNKERVQFYEGTVIAKKNSSINTTITVRKTLQGIGIERIFLIHSPKLESITVLRSSKVRRSKLYYLRNLKGKASRLKEIF 119          
BLAST of mRNA_L-elsbetiae_contig19089.5621.1 vs. uniprot
Match: A0A8F0F7M0_9PHAE (Ribosomal protein L19 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7M0_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 7.090e-46
Identity = 80/127 (62.99%), Postives = 101/127 (79.53%), Query Frame = 1
Query:    1 MTNNNL--VIKINSTQIINSIEKPYIKKDIPKILVGDNVKIGVLIREGNKERIQYFQGLVICQRNSGINKTIMVRKVIQGIGVERIFLLNSPKLESITIQKSSQIRRSKLYYLRYLAGKASRLKQKF 375
            M N+NL  V  + + +I++ +E  YIKKD+ KI VGD VKIGV I+EGNKERIQY+QG+++ + NSG+N TI VRKV QGIGVER FL++SPK ESI I KSS++RRSKLYYLR + GK SRLKQ+F
Sbjct:    1 MKNSNLRQVPLLPTAKIMDFVESTYIKKDVSKIFVGDTVKIGVFIKEGNKERIQYYQGIILGKNNSGVNLTISVRKVFQGIGVERRFLIHSPKFESIEIIKSSRVRRSKLYYLRSIVGKGSRLKQRF 127          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19089.5621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8E6D2H5_9PHAE2.820e-5469.9250S ribosomal protein L19, chloroplastic n=1 Tax=I... [more]
A0A7S6UA05_9STRA2.640e-4962.3050S ribosomal protein L19, chloroplastic n=1 Tax=S... [more]
A0A2U9NPS4_9STRA1.100e-4763.0350S ribosomal protein L19, chloroplastic n=1 Tax=A... [more]
A0A8F0FAK4_9PHAE3.030e-4767.24Ribosomal protein L19 n=1 Tax=Desmarestia aculeata... [more]
A0A023HAL8_9STRA4.470e-4757.5050S ribosomal protein L19, chloroplastic n=1 Tax=D... [more]
A0A516Z9W5_9STRA1.450e-4661.1650S ribosomal protein L19, chloroplastic n=1 Tax=F... [more]
A0A8F5PLI7_9STRA1.820e-4661.3450S ribosomal protein L19, chloroplastic n=4 Tax=C... [more]
A0A023JEN2_9STRA3.550e-4663.8750S ribosomal protein L19, chloroplastic n=1 Tax=E... [more]
A0A8F0WGV8_9STRA3.660e-4664.1050S ribosomal protein L19, chloroplastic n=1 Tax=T... [more]
A0A8F0F7M0_9PHAE7.090e-4662.99Ribosomal protein L19 n=2 Tax=Laminariales TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19089contigL-elsbetiae_contig19089:80..460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.4
Seed ortholog evalue3e-31
Seed eggNOG ortholog159749.E7BWJ0
Preferred namerpl19
KEGG koko:K02884
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0031974,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.Ribosomal protein L19
EggNOG OGs2XFXY@2836,COG0335@1,KOG1698@2759
COG Functional cat.J
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size381
Cds size381
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815793.2781723-CDS-L-elsbetiae_contig19089:79..4601622815793.2781723-CDS-L-elsbetiae_contig19089:79..460Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19089 80..460 +
1691683106.5121477-CDS-L-elsbetiae_contig19089:79..4601691683106.5121477-CDS-L-elsbetiae_contig19089:79..460Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19089 80..460 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19089.5621.1prot_L-elsbetiae_contig19089.5621.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19089 80..460 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19089.5621.1

>prot_L-elsbetiae_contig19089.5621.1 ID=prot_L-elsbetiae_contig19089.5621.1|Name=mRNA_L-elsbetiae_contig19089.5621.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
MTNNNLVIKINSTQIINSIEKPYIKKDIPKILVGDNVKIGVLIREGNKER
IQYFQGLVICQRNSGINKTIMVRKVIQGIGVERIFLLNSPKLESITIQKS
SQIRRSKLYYLRYLAGKASRLKQKFS*
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mRNA from alignment at L-elsbetiae_contig19089:80..460+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19089.5621.1 ID=mRNA_L-elsbetiae_contig19089.5621.1|Name=mRNA_L-elsbetiae_contig19089.5621.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=381bp|location=Sequence derived from alignment at L-elsbetiae_contig19089:80..460+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACAAATAATAATCTTGTTATTAAAATTAATTCTACACAAATTATTAA TTCAATTGAAAAACCTTATATAAAAAAAGATATTCCTAAAATACTTGTTG GAGATAATGTGAAAATTGGTGTATTAATTCGAGAAGGAAATAAAGAACGT ATTCAATATTTTCAAGGACTCGTTATTTGTCAAAGAAATAGTGGTATAAA TAAAACTATTATGGTTCGTAAAGTTATTCAAGGGATTGGGGTAGAACGAA TATTTTTATTAAATTCACCGAAATTAGAATCAATTACAATTCAAAAATCA TCCCAAATAAGACGTTCAAAATTATATTATTTACGTTATTTAGCTGGTAA AGCTAGTCGTCTTAAACAAAAATTTTCATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19089:80..460+

>mRNA_L-elsbetiae_contig19089.5621.1 ID=mRNA_L-elsbetiae_contig19089.5621.1|Name=mRNA_L-elsbetiae_contig19089.5621.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig19089:80..460+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACAAATAATAATCTTGTTATTAAAATTAATTCTACACAAATTATTAA
TTCAATTGAAAAACCTTATATAAAAAAAGATATTCCTAAAATACTTGTTG
GAGATAATGTGAAAATTGGTGTATTAATTCGAGAAGGAAATAAAGAACGT
ATTCAATATTTTCAAGGACTCGTTATTTGTCAAAGAAATAGTGGTATAAA
TAAAACTATTATGGTTCGTAAAGTTATTCAAGGGATTGGGGTAGAACGAA
TATTTTTATTAAATTCACCGAAATTAGAATCAATTACAATTCAAAAATCA
TCCCAAATAAGACGTTCAAAATTATATTATTTACGTTATTTAGCTGGTAA
AGCTAGTCGTCTTAAACAAAAATTTTCATAAATGACAAATAATAATCTTG
TTATTAAAATTAATTCTACACAAATTATTAATTCAATTGAAAAACCTTAT
ATAAAAAAAGATATTCCTAAAATACTTGTTGGAGATAATGTGAAAATTGG
TGTATTAATTCGAGAAGGAAATAAAGAACGTATTCAATATTTTCAAGGAC
TCGTTATTTGTCAAAGAAATAGTGGTATAAATAAAACTATTATGGTTCGT
AAAGTTATTCAAGGGATTGGGGTAGAACGAATATTTTTATTAAATTCACC
GAAATTAGAATCAATTACAATTCAAAAATCATCCCAAATAAGACGTTCAA
AATTATATTATTTACGTTATTTAGCTGGTAAAGCTAGTCGTCTTAAACAA
AAATTTTCATAA
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