Homology
BLAST of mRNA_L-elsbetiae_contig1905.5606.1 vs. uniprot
Match:
D8LD01_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD01_ECTSI)
HSP 1 Score: 122 bits (307), Expect = 3.630e-29
Identity = 83/126 (65.87%), Postives = 90/126 (71.43%), Query Frame = 1
Query: 190 RSCRVRRGSLQLALTGEVLVVGA--VAGVTAIAATRGLSTLAGAFKLADYRTTSGHDLRLDERLQSKRRQLLPSSEAAPPTRSGS--SSEGR-VSGSGLGVDLDWREEIRLASQLPEDVGPVGRGG 552
RSC RR LQLAL E L VGA +AG I A RGLSTLAGAFKLADYRTTSGHDLRLDE+L SKRR+L PSSE T SGS S+ GR S + LGV+ DWREEIRLASQLP+D G G
Sbjct: 60 RSCCGRR-ELQLALESEALAVGAAVIAGAAIIGAGRGLSTLAGAFKLADYRTTSGHDLRLDEKLGSKRRRLDPSSE----TTSGSLESTGGRGASETALGVETDWREEIRLASQLPDDSVVFGGSG 180
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1905.5606.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 3.63e-29 / Id = 65.87 Sequence D8LD01_ECTSI
Match Name E-value Identity Description
D8LD01_ECTSI 3.630e-29 65.87 Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category chloroplast
Ec32 ortholog description expressed unknown protein
Ec32 ortholog Ec-01_001730.1
Exons 3
Model size 1410
Cds size 543
Stop 1
Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815792.1593692-UTR-L-elsbetiae_contig1905:1209..1278 1622815792.1593692-UTR-L-elsbetiae_contig1905:1209..1278 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig1905 1210..1278 +
1691683105.810717-UTR-L-elsbetiae_contig1905:1209..1278 1691683105.810717-UTR-L-elsbetiae_contig1905:1209..1278 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig1905 1210..1278 +
1622815792.208445-UTR-L-elsbetiae_contig1905:3311..4109 1622815792.208445-UTR-L-elsbetiae_contig1905:3311..4109 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig1905 3312..4109 +
1691683105.8596864-UTR-L-elsbetiae_contig1905:3311..4109 1691683105.8596864-UTR-L-elsbetiae_contig1905:3311..4109 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig1905 3312..4109 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815792.1751866-CDS-L-elsbetiae_contig1905:1278..1468 1622815792.1751866-CDS-L-elsbetiae_contig1905:1278..1468 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig1905 1279..1468 +
1691683105.823104-CDS-L-elsbetiae_contig1905:1278..1468 1691683105.823104-CDS-L-elsbetiae_contig1905:1278..1468 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig1905 1279..1468 +
1622815792.1854823-CDS-L-elsbetiae_contig1905:2092..2177 1622815792.1854823-CDS-L-elsbetiae_contig1905:2092..2177 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig1905 2093..2177 +
1691683105.8356528-CDS-L-elsbetiae_contig1905:2092..2177 1691683105.8356528-CDS-L-elsbetiae_contig1905:2092..2177 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig1905 2093..2177 +
1622815792.1952248-CDS-L-elsbetiae_contig1905:3043..3311 1622815792.1952248-CDS-L-elsbetiae_contig1905:3043..3311 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig1905 3044..3311 +
1691683105.8468144-CDS-L-elsbetiae_contig1905:3043..3311 1691683105.8468144-CDS-L-elsbetiae_contig1905:3043..3311 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig1905 3044..3311 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1905.5606.1
>prot_L-elsbetiae_contig1905.5606.1 ID=prot_L-elsbetiae_contig1905.5606.1|Name=mRNA_L-elsbetiae_contig1905.5606.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=181bp
MRVCYSDAKTATLVLLLSLSPAFGFTHHASRLSSPLRPEGRSCRVRRGSL QLALTGEVLVVGAVAGVTAIAATRGLSTLAGAFKLADYRTTSGHDLRLDE RLQSKRRQLLPSSEAAPPTRSGSSSEGRVSGSGLGVDLDWREEIRLASQL PEDVGPVGRGGPTVVARVEETGREIGRHRD* back to top mRNA from alignment at L-elsbetiae_contig1905:1210..4109+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1905.5606.1 ID=mRNA_L-elsbetiae_contig1905.5606.1|Name=mRNA_L-elsbetiae_contig1905.5606.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2900bp|location=Sequence derived from alignment at L-elsbetiae_contig1905:1210..4109+ (Laminarionema elsbetiae ELsaHSoW15)GTACTTGGTAGTACAGCCCCACAGCCTCCACACACCACCCAGAGCATCCA
AGCGCCCAAGCTTCTGATA ATGAGAGTGTGCTATTCGGATGCTAAGACTG
CTACGCTTGTGCTGCTGTTGAGTCTCTCTCCCGCGTTTGGTTTCACACAC
CATGCGTCTCGTTTGTCGTCTCCACTTCGACCAGAAGGCCGTTCCTGCCG
GGTGAGGCGAGGGTCTCTTCAACTGGCACTGACTGGCGAAGTGCTGGTGG
TCGGGGCAG GTGAGACAAATGTGGCGTTTGGGATGGCCAGCCTAGATAGA
AGACTGACCGGGGGGGTAGATCAATCCTAGAGAGAAAGGGAGAGAGCGAG
TGGAGAGAAAAGTGGCCCTCTGCAACACGCGAGTGATATGAAGACTATTT
GTGTAGAGCAACAACGCAACATTCGTTGTGGATATGCATGTGAATACGAA
GTACCGGTATGTACATACCAGCACCCAAAGGGAAAAGAGTCACACCTACG
AGATGTTCCTCGGGTGTTTGCCTTTCACGCCCGGAAGGAGCTGGCAGCAA
TCATGCATTCATCTGTTTGGTAAAACACTCGTCTTCAACCCTCGCGACCT
CGTGGGTTGCTCCGTGATTTTCGGTGCCCGGCCCAAGTGGAATGTACTGG
CATTTCATAGACATGGTTAGATACATATTGTAGGACGCCGAAGAAGGCGA
CAGAGAGGCCTTCAGCAGCGAAATCATCATCGCACCGGAAAGATGGCACC
CACCGTTTTCCCCCAACGTGAACGTGCAGCCGTTCAACCCTCGGTTCTGA
CACAAGCGGCTCCCGTCTGTTTCCTCTGCGTTGCTCGTTTTCTCGCTGTG
CGCATCTTGTGCTTGGGGGGGGGGGGGTAGTAGTTGCGGGAGTCACAGCG
ATCGCAGCTACCCGAGGACTTTCGACCCTCGCCGGGGCGTTTAAGCTCGC
GGACTACCGAACCACGAG GTAGGAACGGCAGTCAGTGTTTGGTTCGATTT
TCGTCGTTCTGAAAGAAAAATACCCCGGATGCACTACAAATGATGTAGGC
GATGGAGGGAAATTTGTGACAAGTGCTGTTTGTCAGCTTACGGTTTTGTC
CGTACCACTTTTGCTCCAGTCTTGCTTGTAGGCTTCTTCTTTACATATAA
AGCGCTGGATTATGGTTTTTCGTAGTTCCTTGCCACCGACATCTGGTACA
GCTCGAAGTCATGATATCGGGGTACCGATGTCTGGCTAGGCCCGCCCTAC
CTGGGCACCCACTTAAATGTGACACCGACTAAGATTAGCAAGGTGGGTCC
TCGGCTCTTCGCAATAGCCGGCTCTATGGAAATCATGATCAACATGATAG
ATGCCACTCCAGGAAAACTGGAGTATGGAATATTTTGTCGTTTTGAAGCG
CAATCGCCTGCTTCTTCCTCCGCTTTGCTTCCCTAAAATGCGGTTTTCGC
AGCGGTCCTTTTCACAACCTCCGTCTCCACTCACAGCAGTCACTCCCCCA
CTTCTTTCGAGCACTCACACGCCGGGAAAATCTTCCACACAACAACACTA
AGCACGGTTTGTGCTGCCGTGTGTCTGGATCCTTCCTGGCTTGCATGTCA
TCACCCATTCGCTCGCCATGGCTTTTGGTTTTGCCATGTGTTGTGTCAAT
CGCTTCTTGGCGCATGGATTCATACTTGTCACGCTGTTGCCTGATCGCGT
ACCACATGCATGCGAAGTACGAAGTACATAAAATATGTTTCGTTCCGCGC
AACATTGTTTCCTCACCATGCCACCACCGTAGTAACATCACCCCCACCCC
TTTCCCCTTGTCCTGCCTTGGTCTCTCCTGCCAGCGGTCACGATCTGCGC
CTGGACGAGAGGCTACAGTCGAAGCGGCGTCAACTCCTTCCGTCGTCGGA
AGCGGCGCCTCCAACTCGTTCGGGGAGTTCAAGCGAGGGGCGCGTATCTG
GATCGGGGTTGGGGGTGGACTTGGATTGGCGAGAAGAGATTCGGCTGGCC
TCGCAACTACCAGAAGATGTTGGCCCTGTTGGGCGTGGCGGTCCCACAGT
CGTGGCGAGAGTAGAGGAAACGGGGCGTGAGATAGGGCGACACCGCGATT
AG ATAGATAGCGTGAGCGTTAGGGTTCGCGAGGAGGGTGCTGAGGACGCG
CCTGGTGGGTAAACGCGGTCGGTTTATGGTCGAGGTGACAGCAACGGTAC
AGGCAAGAAGCGTGTATGTGTATGTGGGTTCTTCGAGGACGTTCAGCCGC
ATGGTGTTTGTACGGTGAAGGGCAGGCGTGGACAAATTGTAAATAGGCAC
GCTCAGGTGGTGAGTATGAGTGATCAACGTGAGATTTCCATCTACCAAGA
AACCTTCATACGGCGTTGCCTCCCTGGATTTCAAGATTTGCGGGGTTGGC
CATTGATGATAGTAGCGAGCGACACAGGCGCCTTGTGGCCGTTCGGGTTC
GCGTGCAACGTGCGAGGTACCCAGTCGACATGAGCGTGACCGCATTCATC
CCGCAAGTTCAGAGATAACACAGCTTCGAAGACAACCTACATACACATGT
TGTCTTCCGCTGTGATGATAAAGCCGGTATCACCCCCGCGGTCTCCCTCG
CAGAGGTCTGTGGAGAAGGGCGAGACGACTTGCGAAGAATCTGTTGATTA
CTCCTGTTCTTTGTTCTTGGCGCGGGGTTGCTAACCAGTCGCCAACAACA
GAAGTGTTGGTGGTAGTTTGCTAGAAAACTAAACATGTGATATTCGTTCT
TGTTCACAATGCCGAGGGGGGAAGCTTGATCTGGAAAAAAACAGGACGTT
GCAGGTAAATACCGTGCGCAATTAGCCTAGGATCGTAGATTGCAACTGAC
ATTATTCGAATGTCTCGTTTTGGTTGTGAGCCAACAAAGTTTTTAGTGGT
back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1905:1210..4109+
>mRNA_L-elsbetiae_contig1905.5606.1 ID=mRNA_L-elsbetiae_contig1905.5606.1|Name=mRNA_L-elsbetiae_contig1905.5606.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1086bp|location=Sequence derived from alignment at L-elsbetiae_contig1905:1210..4109+ (Laminarionema elsbetiae ELsaHSoW15) ATGAGAGTGTGCTATTCGGATGCTAAGACTGCTACGCTTGTGCTGCTGTT GAGTCTCTCTCCCGCGTTTGGTTTCACACACCATGCGTCTCGTTTGTCGT CTCCACTTCGACCAGAAGGCCGTTCCTGCCGGGTGAGGCGAGGGTCTCTT CAACTGGCACTGACTGGCGAAGTGCTGGTGGTCGGGGCAGATGAGAGTGT GCTATTCGGATGCTAAGACTGCTACGCTTGTGCTGCTGTTGAGTCTCTCT CCCGCGTTTGGTTTCACACACCATGCGTCTCGTTTGTCGTCTCCACTTCG ACCAGAAGGCCGTTCCTGCCGGGTGAGGCGAGGGTCTCTTCAACTGGCAC TGACTGGCGAAGTGCTGGTGGTCGGGGCAGTTGCGGGAGTCACAGCGATC GCAGCTACCCGAGGACTTTCGACCCTCGCCGGGGCGTTTAAGCTCGCGGA CTACCGAACCACGAGTTGCGGGAGTCACAGCGATCGCAGCTACCCGAGGA CTTTCGACCCTCGCCGGGGCGTTTAAGCTCGCGGACTACCGAACCACGAG CGGTCACGATCTGCGCCTGGACGAGAGGCTACAGTCGAAGCGGCGTCAAC TCCTTCCGTCGTCGGAAGCGGCGCCTCCAACTCGTTCGGGGAGTTCAAGC GAGGGGCGCGTATCTGGATCGGGGTTGGGGGTGGACTTGGATTGGCGAGA AGAGATTCGGCTGGCCTCGCAACTACCAGAAGATGTTGGCCCTGTTGGGC GTGGCGGTCCCACAGTCGTGGCGAGAGTAGAGGAAACGGGGCGTGAGATA GGGCGACACCGCGATTAGCGGTCACGATCTGCGCCTGGACGAGAGGCTAC AGTCGAAGCGGCGTCAACTCCTTCCGTCGTCGGAAGCGGCGCCTCCAACT CGTTCGGGGAGTTCAAGCGAGGGGCGCGTATCTGGATCGGGGTTGGGGGT GGACTTGGATTGGCGAGAAGAGATTCGGCTGGCCTCGCAACTACCAGAAG ATGTTGGCCCTGTTGGGCGTGGCGGTCCCACAGTCGTGGCGAGAGTAGAG GAAACGGGGCGTGAGATAGGGCGACACCGCGATTAG back to top