mRNA_L-elsbetiae_contig1905.5606.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1905.5606.1
Unique NamemRNA_L-elsbetiae_contig1905.5606.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1905.5606.1 vs. uniprot
Match: D8LD01_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD01_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 3.630e-29
Identity = 83/126 (65.87%), Postives = 90/126 (71.43%), Query Frame = 1 
Query:  190 RSCRVRRGSLQLALTGEVLVVGA--VAGVTAIAATRGLSTLAGAFKLADYRTTSGHDLRLDERLQSKRRQLLPSSEAAPPTRSGS--SSEGR-VSGSGLGVDLDWREEIRLASQLPEDVGPVGRGG 552
            RSC  RR  LQLAL  E L VGA  +AG   I A RGLSTLAGAFKLADYRTTSGHDLRLDE+L SKRR+L PSSE    T SGS  S+ GR  S + LGV+ DWREEIRLASQLP+D    G  G
Sbjct:   60 RSCCGRR-ELQLALESEALAVGAAVIAGAAIIGAGRGLSTLAGAFKLADYRTTSGHDLRLDEKLGSKRRRLDPSSE----TTSGSLESTGGRGASETALGVETDWREEIRLASQLPDDSVVFGGSG 180
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1905.5606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD01_ECTSI3.630e-2965.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1905contigL-elsbetiae_contig1905:1210..4109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_001730.1
Exons3
Model size1410
Cds size543
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1905.5606.1prot_L-elsbetiae_contig1905.5606.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1905 1279..3311 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815792.1593692-UTR-L-elsbetiae_contig1905:1209..12781622815792.1593692-UTR-L-elsbetiae_contig1905:1209..1278Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1905 1210..1278 +
1691683105.810717-UTR-L-elsbetiae_contig1905:1209..12781691683105.810717-UTR-L-elsbetiae_contig1905:1209..1278Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1905 1210..1278 +
1622815792.208445-UTR-L-elsbetiae_contig1905:3311..41091622815792.208445-UTR-L-elsbetiae_contig1905:3311..4109Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1905 3312..4109 +
1691683105.8596864-UTR-L-elsbetiae_contig1905:3311..41091691683105.8596864-UTR-L-elsbetiae_contig1905:3311..4109Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1905 3312..4109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815792.1751866-CDS-L-elsbetiae_contig1905:1278..14681622815792.1751866-CDS-L-elsbetiae_contig1905:1278..1468Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1905 1279..1468 +
1691683105.823104-CDS-L-elsbetiae_contig1905:1278..14681691683105.823104-CDS-L-elsbetiae_contig1905:1278..1468Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1905 1279..1468 +
1622815792.1854823-CDS-L-elsbetiae_contig1905:2092..21771622815792.1854823-CDS-L-elsbetiae_contig1905:2092..2177Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1905 2093..2177 +
1691683105.8356528-CDS-L-elsbetiae_contig1905:2092..21771691683105.8356528-CDS-L-elsbetiae_contig1905:2092..2177Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1905 2093..2177 +
1622815792.1952248-CDS-L-elsbetiae_contig1905:3043..33111622815792.1952248-CDS-L-elsbetiae_contig1905:3043..3311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1905 3044..3311 +
1691683105.8468144-CDS-L-elsbetiae_contig1905:3043..33111691683105.8468144-CDS-L-elsbetiae_contig1905:3043..3311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1905 3044..3311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1905.5606.1

>prot_L-elsbetiae_contig1905.5606.1 ID=prot_L-elsbetiae_contig1905.5606.1|Name=mRNA_L-elsbetiae_contig1905.5606.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=181bp
MRVCYSDAKTATLVLLLSLSPAFGFTHHASRLSSPLRPEGRSCRVRRGSL
QLALTGEVLVVGAVAGVTAIAATRGLSTLAGAFKLADYRTTSGHDLRLDE
RLQSKRRQLLPSSEAAPPTRSGSSSEGRVSGSGLGVDLDWREEIRLASQL
PEDVGPVGRGGPTVVARVEETGREIGRHRD*
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mRNA from alignment at L-elsbetiae_contig1905:1210..4109+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1905.5606.1 ID=mRNA_L-elsbetiae_contig1905.5606.1|Name=mRNA_L-elsbetiae_contig1905.5606.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2900bp|location=Sequence derived from alignment at L-elsbetiae_contig1905:1210..4109+ (Laminarionema elsbetiae ELsaHSoW15)
GTACTTGGTAGTACAGCCCCACAGCCTCCACACACCACCCAGAGCATCCA
AGCGCCCAAGCTTCTGATAATGAGAGTGTGCTATTCGGATGCTAAGACTG
CTACGCTTGTGCTGCTGTTGAGTCTCTCTCCCGCGTTTGGTTTCACACAC
CATGCGTCTCGTTTGTCGTCTCCACTTCGACCAGAAGGCCGTTCCTGCCG
GGTGAGGCGAGGGTCTCTTCAACTGGCACTGACTGGCGAAGTGCTGGTGG
TCGGGGCAGGTGAGACAAATGTGGCGTTTGGGATGGCCAGCCTAGATAGA
AGACTGACCGGGGGGGTAGATCAATCCTAGAGAGAAAGGGAGAGAGCGAG
TGGAGAGAAAAGTGGCCCTCTGCAACACGCGAGTGATATGAAGACTATTT
GTGTAGAGCAACAACGCAACATTCGTTGTGGATATGCATGTGAATACGAA
GTACCGGTATGTACATACCAGCACCCAAAGGGAAAAGAGTCACACCTACG
AGATGTTCCTCGGGTGTTTGCCTTTCACGCCCGGAAGGAGCTGGCAGCAA
TCATGCATTCATCTGTTTGGTAAAACACTCGTCTTCAACCCTCGCGACCT
CGTGGGTTGCTCCGTGATTTTCGGTGCCCGGCCCAAGTGGAATGTACTGG
CATTTCATAGACATGGTTAGATACATATTGTAGGACGCCGAAGAAGGCGA
CAGAGAGGCCTTCAGCAGCGAAATCATCATCGCACCGGAAAGATGGCACC
CACCGTTTTCCCCCAACGTGAACGTGCAGCCGTTCAACCCTCGGTTCTGA
CACAAGCGGCTCCCGTCTGTTTCCTCTGCGTTGCTCGTTTTCTCGCTGTG
CGCATCTTGTGCTTGGGGGGGGGGGGGTAGTAGTTGCGGGAGTCACAGCG
ATCGCAGCTACCCGAGGACTTTCGACCCTCGCCGGGGCGTTTAAGCTCGC
GGACTACCGAACCACGAGGTAGGAACGGCAGTCAGTGTTTGGTTCGATTT
TCGTCGTTCTGAAAGAAAAATACCCCGGATGCACTACAAATGATGTAGGC
GATGGAGGGAAATTTGTGACAAGTGCTGTTTGTCAGCTTACGGTTTTGTC
CGTACCACTTTTGCTCCAGTCTTGCTTGTAGGCTTCTTCTTTACATATAA
AGCGCTGGATTATGGTTTTTCGTAGTTCCTTGCCACCGACATCTGGTACA
GCTCGAAGTCATGATATCGGGGTACCGATGTCTGGCTAGGCCCGCCCTAC
CTGGGCACCCACTTAAATGTGACACCGACTAAGATTAGCAAGGTGGGTCC
TCGGCTCTTCGCAATAGCCGGCTCTATGGAAATCATGATCAACATGATAG
ATGCCACTCCAGGAAAACTGGAGTATGGAATATTTTGTCGTTTTGAAGCG
CAATCGCCTGCTTCTTCCTCCGCTTTGCTTCCCTAAAATGCGGTTTTCGC
AGCGGTCCTTTTCACAACCTCCGTCTCCACTCACAGCAGTCACTCCCCCA
CTTCTTTCGAGCACTCACACGCCGGGAAAATCTTCCACACAACAACACTA
AGCACGGTTTGTGCTGCCGTGTGTCTGGATCCTTCCTGGCTTGCATGTCA
TCACCCATTCGCTCGCCATGGCTTTTGGTTTTGCCATGTGTTGTGTCAAT
CGCTTCTTGGCGCATGGATTCATACTTGTCACGCTGTTGCCTGATCGCGT
ACCACATGCATGCGAAGTACGAAGTACATAAAATATGTTTCGTTCCGCGC
AACATTGTTTCCTCACCATGCCACCACCGTAGTAACATCACCCCCACCCC
TTTCCCCTTGTCCTGCCTTGGTCTCTCCTGCCAGCGGTCACGATCTGCGC
CTGGACGAGAGGCTACAGTCGAAGCGGCGTCAACTCCTTCCGTCGTCGGA
AGCGGCGCCTCCAACTCGTTCGGGGAGTTCAAGCGAGGGGCGCGTATCTG
GATCGGGGTTGGGGGTGGACTTGGATTGGCGAGAAGAGATTCGGCTGGCC
TCGCAACTACCAGAAGATGTTGGCCCTGTTGGGCGTGGCGGTCCCACAGT
CGTGGCGAGAGTAGAGGAAACGGGGCGTGAGATAGGGCGACACCGCGATT
AGATAGATAGCGTGAGCGTTAGGGTTCGCGAGGAGGGTGCTGAGGACGCG
CCTGGTGGGTAAACGCGGTCGGTTTATGGTCGAGGTGACAGCAACGGTAC
AGGCAAGAAGCGTGTATGTGTATGTGGGTTCTTCGAGGACGTTCAGCCGC
ATGGTGTTTGTACGGTGAAGGGCAGGCGTGGACAAATTGTAAATAGGCAC
GCTCAGGTGGTGAGTATGAGTGATCAACGTGAGATTTCCATCTACCAAGA
AACCTTCATACGGCGTTGCCTCCCTGGATTTCAAGATTTGCGGGGTTGGC
CATTGATGATAGTAGCGAGCGACACAGGCGCCTTGTGGCCGTTCGGGTTC
GCGTGCAACGTGCGAGGTACCCAGTCGACATGAGCGTGACCGCATTCATC
CCGCAAGTTCAGAGATAACACAGCTTCGAAGACAACCTACATACACATGT
TGTCTTCCGCTGTGATGATAAAGCCGGTATCACCCCCGCGGTCTCCCTCG
CAGAGGTCTGTGGAGAAGGGCGAGACGACTTGCGAAGAATCTGTTGATTA
CTCCTGTTCTTTGTTCTTGGCGCGGGGTTGCTAACCAGTCGCCAACAACA
GAAGTGTTGGTGGTAGTTTGCTAGAAAACTAAACATGTGATATTCGTTCT
TGTTCACAATGCCGAGGGGGGAAGCTTGATCTGGAAAAAAACAGGACGTT
GCAGGTAAATACCGTGCGCAATTAGCCTAGGATCGTAGATTGCAACTGAC
ATTATTCGAATGTCTCGTTTTGGTTGTGAGCCAACAAAGTTTTTAGTGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1905:1210..4109+

>mRNA_L-elsbetiae_contig1905.5606.1 ID=mRNA_L-elsbetiae_contig1905.5606.1|Name=mRNA_L-elsbetiae_contig1905.5606.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1086bp|location=Sequence derived from alignment at L-elsbetiae_contig1905:1210..4109+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGAGTGTGCTATTCGGATGCTAAGACTGCTACGCTTGTGCTGCTGTT
GAGTCTCTCTCCCGCGTTTGGTTTCACACACCATGCGTCTCGTTTGTCGT
CTCCACTTCGACCAGAAGGCCGTTCCTGCCGGGTGAGGCGAGGGTCTCTT
CAACTGGCACTGACTGGCGAAGTGCTGGTGGTCGGGGCAGATGAGAGTGT
GCTATTCGGATGCTAAGACTGCTACGCTTGTGCTGCTGTTGAGTCTCTCT
CCCGCGTTTGGTTTCACACACCATGCGTCTCGTTTGTCGTCTCCACTTCG
ACCAGAAGGCCGTTCCTGCCGGGTGAGGCGAGGGTCTCTTCAACTGGCAC
TGACTGGCGAAGTGCTGGTGGTCGGGGCAGTTGCGGGAGTCACAGCGATC
GCAGCTACCCGAGGACTTTCGACCCTCGCCGGGGCGTTTAAGCTCGCGGA
CTACCGAACCACGAGTTGCGGGAGTCACAGCGATCGCAGCTACCCGAGGA
CTTTCGACCCTCGCCGGGGCGTTTAAGCTCGCGGACTACCGAACCACGAG
CGGTCACGATCTGCGCCTGGACGAGAGGCTACAGTCGAAGCGGCGTCAAC
TCCTTCCGTCGTCGGAAGCGGCGCCTCCAACTCGTTCGGGGAGTTCAAGC
GAGGGGCGCGTATCTGGATCGGGGTTGGGGGTGGACTTGGATTGGCGAGA
AGAGATTCGGCTGGCCTCGCAACTACCAGAAGATGTTGGCCCTGTTGGGC
GTGGCGGTCCCACAGTCGTGGCGAGAGTAGAGGAAACGGGGCGTGAGATA
GGGCGACACCGCGATTAGCGGTCACGATCTGCGCCTGGACGAGAGGCTAC
AGTCGAAGCGGCGTCAACTCCTTCCGTCGTCGGAAGCGGCGCCTCCAACT
CGTTCGGGGAGTTCAAGCGAGGGGCGCGTATCTGGATCGGGGTTGGGGGT
GGACTTGGATTGGCGAGAAGAGATTCGGCTGGCCTCGCAACTACCAGAAG
ATGTTGGCCCTGTTGGGCGTGGCGGTCCCACAGTCGTGGCGAGAGTAGAG
GAAACGGGGCGTGAGATAGGGCGACACCGCGATTAG
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