mRNA_L-elsbetiae_contig1879.5503.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1879.5503.1
Unique NamemRNA_L-elsbetiae_contig1879.5503.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1879.5503.1 vs. uniprot
Match: A0A6H5KHY4_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KHY4_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.880e-25
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = 2 
Query:    2 PYAMAMCFLVGGVGFGITYYINTAVTEWGAEEMVYPVMAMIYVYARNARFFESDDESATKILEGHG 199
            PYA+A+  LVGGVGF  T+Y NT ++EWG +E+ YP+MAMIYVYARNARFFESD+ES+ KIL GHG
Sbjct:    7 PYAVALSLLVGGVGFCTTFYFNTEISEWGKDEIAYPMMAMIYVYARNARFFESDEESSAKILGGHG 72
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1879.5503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KHY4_9PHAE1.880e-2569.70Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1879contigL-elsbetiae_contig1879:18043..21889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant
Ec32 orthologEc-23_002130.1
Exons2
Model size262
Cds size252
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1879.5503.1prot_L-elsbetiae_contig1879.5503.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1879 18053..21889 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815781.8661392-UTR-L-elsbetiae_contig1879:18042..180521622815781.8661392-UTR-L-elsbetiae_contig1879:18042..18052Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1879 18043..18052 +
1691683098.7629793-UTR-L-elsbetiae_contig1879:18042..180521691683098.7629793-UTR-L-elsbetiae_contig1879:18042..18052Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1879 18043..18052 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815781.8769734-CDS-L-elsbetiae_contig1879:18052..181631622815781.8769734-CDS-L-elsbetiae_contig1879:18052..18163Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1879 18053..18163 +
1691683098.7713006-CDS-L-elsbetiae_contig1879:18052..181631691683098.7713006-CDS-L-elsbetiae_contig1879:18052..18163Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1879 18053..18163 +
1622815781.8868785-CDS-L-elsbetiae_contig1879:21748..218891622815781.8868785-CDS-L-elsbetiae_contig1879:21748..21889Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1879 21749..21889 +
1691683098.7793186-CDS-L-elsbetiae_contig1879:21748..218891691683098.7793186-CDS-L-elsbetiae_contig1879:21748..21889Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1879 21749..21889 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1879.5503.1

>prot_L-elsbetiae_contig1879.5503.1 ID=prot_L-elsbetiae_contig1879.5503.1|Name=mRNA_L-elsbetiae_contig1879.5503.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
MAMCFLVGGVGFGITYYINTAVTEWGAEEMVYPVMAMIYVYARNARFFES
DDESATKILEGHGQTTADSSKGSSRHGGASGNDG
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mRNA from alignment at L-elsbetiae_contig1879:18043..21889+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1879.5503.1 ID=mRNA_L-elsbetiae_contig1879.5503.1|Name=mRNA_L-elsbetiae_contig1879.5503.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3847bp|location=Sequence derived from alignment at L-elsbetiae_contig1879:18043..21889+ (Laminarionema elsbetiae ELsaHSoW15)
TCCCTATGCAATGGCCATGTGCTTCCTAGTGGGAGGCGTGGGCTTCGGGA
TCACCTACTACATTAACACCGCCGTGACCGAGTGGGGAGCGGAGGAGATG
GTCTACCCTGTGATGGCGATGGTGAGACCTCCTCAGACAGACTGCTCGTG
GTAGCACGACAGCAAGCAGGTGGTGGGCAGAGGACACAAAGCCCTGTGGT
GAACATCCCCTCTCTGGTTGGCTACTTTGAGCTCTCTATCCCCAAAAGTG
ATGAGAAGAGAGAAAGGGAGACGATGTATGTAAGTAGCTACATAGTACAA
GTTCTGTTAGAGGTGTGTAGACTACACGTATGTACATGTCTTTGTGTATA
TCGCAGATAGAGTGTGAGAGGCAGAGCCGAGCGGGCGTGAACAGCCATGG
GCCCTCCGCCGAAACAACAGGCAGATCCGCAAGGGAGGTCTCAAAGTCAC
GAGTTGCAGTGCAATCTACAACAAGTGCTTCTTTAGGGGCGTTCCAGTGG
CATCACGGAGATCTGTGTTTGTCTGGACGGGCAAGATTAGGATCGCAAGA
ATGCATGCCCGTCGCGCAGTACTAGCTAGTTAGGGGCATAATGAGCCGCA
CACCAACCACAGCACCGGCTCAATACCGTGCAGTAGGCTGACCCACCCAT
CACCACCCGTGGACCCACGGCCCCAACCCCCAGCGGTGATAACGTGGAGT
GTCACGACATACATACGGTTAACTTGGTTTCAGTTGATGCCACTGGCACA
CCGTTGTGGCTCGAGGTCTATTCTCTGCGTTCTGGCGAGAAAATCAATTT
CTGCCAGAGTGCACAGCTTTCCCTGCCTGCTGGTGTGTGTTAAGCTGTGT
GCGAGCCATACGCTCTCGGCTGTCACCTGACTCTCTGTCTCTGTCTTTGC
GCGCACACACACAAGCACACATACACCGGTTTTGACTCTCTTCCCTTGGC
GAACAGAAAGTTATTCCGGACAGAGCAACCATTAAGGTGTTGGCGCCTAG
TACAATGTACCAGGACGGACTACTTGTTAGGTGTTGGCGCCTAGTACAAT
GTACCAGGACGGACTACTTGGTAGTCGTTTGCCGCCACTAATACATTGTA
TCAGTGAAAACATGGGAGAATCGGTGTGCGTGCGCTTCGTCCAATCTGTT
TTTTTTCCGAGAACTCGGATTTCTGGCAAATGGTCAACCATTTTGAGACC
AGTTGGTGTGGCATCGAATGCTTTGAGATCAGTTCGTCGTGTGGCCGCCC
GCGAAAACACAAGCCCGGCCCTCTCCTCAAAGCTTAAAACCCACCCCTCC
CACCACACAATCCATGGCAGCAGGAGCAAAAGACAAGAGCTATGTCGCCT
GCAAACCTCAGTCGGTTTTTGCATACCCCCAACAAAAATAGACCAACTTG
TTGATGTCATCTCCAAAAACAAAGCTCCGTTGCTTGATTATGGTGAGGTC
GTCGATCATCAGATATGTTTTGTATTGTATCCCTCCTCACCGATCGTAGT
ACCATATGGTCGGCTATATAATAGTAAGAAGCGTTGATACGTGCGGCAGT
TATGGCAGCAACGGGCTCCAGCTTATTATCTCTTGCACGCGTTCTCTGCT
GCAGTGGCGACTAAAACCAGCTGACTAAAACACCGCGGCGTCGTCGCACG
TCAGTGCCGTCATCGCCCCGTACCGGGCGTTCAATTATTTTGCACATTGC
GCGCACACCTGCCCTCCCCATCTCCCTCTTCAGTGAGGATTGTAGAGCGC
CTCGTGGGGGACTACTGTAGAAGAGGACAGTAAGATGTGGCGCTGGCAGT
CTGGTTCGTTTGCCGTGTCGCATGCGCGCAGGCGGCCTGACGTGGTTTGA
AGTCCGGGCATTTCCCGCCAATTAGAAGAGCTCGGTAGGGCCGCACCAAT
CAGGGGGCTGGTCCGATGACTGTTGGGGCGGTGATAGTTCCTGGCAGTTT
ATGCTCTCCTGCTCGTACATTTTACTTGCGGGTTTTCGTAGTTCGGCAAA
TTTGCGTATATCTCTTGTTACAATGTACTTGGAACCATCTGTAATATTTC
CGCAGAGTCTTTCCGCCGATAAATAACCCACCCGAGCTGGTCGTTGCCTG
GTACATTGTACTAGGCGCCAACACCATATTGTGAAGCCAATTCGTCGAGG
AGAGGTACACCCAAAGACCAAAGAGCTCCGAACAAAGAGCGCGAGTAGAG
CTGTCGACACATCTGCTCAGCCCAAATTCCTCGGGCCAGCCCAAATTCCA
ATTTGGAACCCCCTGCTTACATTGCGTGCGAGACCCATACATGCCTCACC
GTTGCTCCCCAGATTTGGCTCCGAGGCAGACACACCAATGGAGCACACGG
ACGGTAGCGAAGGCTAGACTGCAAACAGGTCTCTATTAGTCGAGCACGCA
GCGAAAATGACCATTTTCGCGGATTCCAACGTAGAAAGCAACCAGACACA
TAAATACCCGGAAAAAATTGTCAGCGCCCCCCGCGGCTTTCAATTTGAAA
TCTACCTAAAACAAATGGCCTTAAGAGCGGCCTTAAGAGCCTTTTTTCCC
CGTGCTGGGATGAAGGGAAAAATCATGAAAAAAGGTCGCGGCTTCGCCGC
TCGCGGCTCATTTAAAACTTGCTTCCCTGCTGGAAACCGCGATGCACCCA
CCCGGAGTGCTTTTATCTGTTTCTGAGATCCATTTTTTTTTTTTTTTTTT
TGCCCATTTTTGGCTTTTTTTCGTCTTCCCTCTGGCCCCCATCCTCCACT
TCTACTCTCGCTAGACGACCCAACCGGGGTCACATAGGAGGGGGGGGTTG
GACCCCCCTGTACGTTNNNNNNNNNNCCGCCGTCCCCCCCCCCGGAGTGC
TTTTATCTGTTTCTGAGATCCATTTTTTTTTTTTTTTTGTCTGCCCATTA
TTGGCTTTTTGTCGTCTGCCCTCTGGCCCCCATCCTCCACTTCTACTCTC
GCTAGACGACCCAACCGGGGTCACGTAGATACATGTATATGGATGTATGA
ATGCCAGTCGCCCCGGTGGTCTTCTTAGTATCTACGCAACCTTCTGAGAA
CCAGGTCCTGGGTTGGAGCCTTTGCGAAACGAGTTTTTTCCCCACATTCG
TTCCTGGAAAATTGAAAGCGATTTCGTAATTTAGTAAATGCTACTTCGAC
TCCATTGTTGACGAGGGTGGGGAGTGCTGAACCCTGCTCCCGATACAAAC
ATTTAAGGCAGGCACCGCAGGAGGGGGTCCAACCCCCCTTCCTGTGTAAC
CCCGGTTGGGTCGTCTAGCTAGTCGTAGTGGAGGAAGGGAGGCCAGTGGG
GCAGACGACACACATGCCAATGGTGGGAGAAAAATAAAAAAAGAAGAAAA
AATACAGACATATGACCCGCTTCCGGAAGTGTAAATAGATACACACAGCG
TGGGGGTTGTTGTCTGGGAATACCATTACAAGAAAGAATTACGCGCAGAG
CAGTGTCCCATCTCTCGTATCTCGTAGCGAAAGTGGTCGGCTGCGAGTGT
TTTCGTCCCGTGCTGCACAACAATTATTTCGCGCATTCCCCTCCCAGCCC
ACGCCCCTTCTCTCGTTTGCGCCCGCCCCTCCCGTTCCCTTCCTTGCAAA
AATACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGGGGGCCGC
ACGGTCGGGGGCCCCGGGAGCGGCGCGCCGTCCCGCGGGGACGACCCGTG
CGCCAGATTTACGTGTACGCTCGTAACGCGCGGTTCTTCGAGAGCGACGA
CGAGTCCGCCACGAAGATTCTCGAGGGCCACGGCCAGACCACCGCCGACA
GCAGCAAGGGAAGCAGCAGGCATGGAGGCGCGTCCGGCAACGACGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1879:18043..21889+

>mRNA_L-elsbetiae_contig1879.5503.1 ID=mRNA_L-elsbetiae_contig1879.5503.1|Name=mRNA_L-elsbetiae_contig1879.5503.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig1879:18043..21889+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCATGTGCTTCCTAGTGGGAGGCGTGGGCTTCGGGATCACCTACTA
CATTAACACCGCCGTGACCGAGTGGGGAGCGGAGGAGATGGTCTACCCTG
TGATGGCGATGATGGCCATGTGCTTCCTAGTGGGAGGCGTGGGCTTCGGG
ATCACCTACTACATTAACACCGCCGTGACCGAGTGGGGAGCGGAGGAGAT
GGTCTACCCTGTGATGGCGATGATTTACGTGTACGCTCGTAACGCGCGGT
TCTTCGAGAGCGACGACGAGTCCGCCACGAAGATTCTCGAGGGCCACGGC
CAGACCACCGCCGACAGCAGCAAGGGAAGCAGCAGGCATGGAGGCGCGTC
CGGCAACGACGGGATTTACGTGTACGCTCGTAACGCGCGGTTCTTCGAGA
GCGACGACGAGTCCGCCACGAAGATTCTCGAGGGCCACGGCCAGACCACC
GCCGACAGCAGCAAGGGAAGCAGCAGGCATGGAGGCGCGTCCGGCAACGA
CGGG
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