mRNA_L-elsbetiae_contig1874.5483.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1874.5483.1
Unique NamemRNA_L-elsbetiae_contig1874.5483.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1874.5483.1 vs. uniprot
Match: A0A6H5JGC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGC1_9PHAE)

HSP 1 Score: 317 bits (813), Expect = 2.760e-104
Identity = 171/319 (53.61%), Postives = 198/319 (62.07%), Query Frame = 1
Query:   22 MSEEGVGGDESLRMTRSFTIFHALVRLFGTGNLPSSLVLHVLGADHREGTTPEETRSVFAELFQRLGRDEHVRDLDLLFCGPNIALRLHDTLHSFSCSHPPAERGQHVSTTPISHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTLVVKLRYNSGLYHDVSELFPAPNALFLFNAGLWGYDDWEPTLEHVLDCGCKSSACRETGDVINRP-----------------PVVVTSYCPEEASDDMETIQRVVVLEGDERCKCLV------VSGLEWLWKPEVNPHRSLVPRQTRCGVEGRVLFENQSWQALR 909
            MSEE +G DESLR+TRSFTIFHAL+R+FG GNLPS LVLH+LGADHREGTTP++TR++F +L QRLG DEHV DLD + CGPNI   LH T H+F   H PA      +   +                                       G L V+L YNSGLYHDVS LF  P+A+FLFNAGLWGYDDWEPTLE++L  GC  +AC  +  V NR                  PVVVTSYC EEASDDMET++RV++ E     +         V GLEWLWKPEVNPHRS VPR+T CGVEGR LFEN SWQALR
Sbjct:   17 MSEECIGEDESLRLTRSFTIFHALMRIFGCGNLPSHLVLHILGADHREGTTPQQTRAMFVDLLQRLGHDEHVLDLDFVLCGPNIPPHLHGTRHTFVHHHAPAAAKMDQNICGLD------------GVWQESPAATPGMRTTRCCDSPPSTAGALTVRLWYNSGLYHDVSGLFATPDAIFLFNAGLWGYDDWEPTLEYIL--GCDRAAC-PSDHVGNRQASPPPIPATNPRPRNVAPVVVTSYCSEEASDDMETLERVLLAEDGSFVEVSPGVASSPVGGLEWLWKPEVNPHRSRVPRRTECGVEGRALFENHSWQALR 320          
BLAST of mRNA_L-elsbetiae_contig1874.5483.1 vs. uniprot
Match: D7FNZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNZ1_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 1.060e-70
Identity = 129/262 (49.24%), Postives = 148/262 (56.49%), Query Frame = 1
Query:  193 VFAELFQRLGRDEHVRDLDLLFCGPNIALRLHDTLHSFSCSHPPAERGQHVSTTPISHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTLVVKLRYNSGLYHDVSELFPAPNALFLFNAGLWGYDDWEPTLEHVLDCGCKSSACRETGDVINRP-----------------PVVVTSYCPEEASDDMETIQRVVV------LEGDERCKCLVVSGLEWLWKPEVNPHRSLVPRQTRCGVEGRVLFENQSWQALR 909
            +F +LFQRLG DEHV+DLD +FCGPNI   LH T H+    H PA   +  +   +                                       G L V+L YNSGLYHDVS LF  P+ALFLFNAGLWGYDDWEPTLEH+L  GC  +AC  +  V NR                  PVVVTSYC EEASDDMET++RV++      +E         V GLEWLWKPEVNPHRS VPR+T CGVEGR LFEN SWQALR
Sbjct:    1 MFVDLFQRLGHDEHVQDLDFVFCGPNIPPHLHGTRHTLVHHHAPAAATKDQTICGLD------------GVWQESPAATPGMMTTRCCDSPPSTAGALTVRLWYNSGLYHDVSGLFATPDALFLFNAGLWGYDDWEPTLEHIL--GCDRAAC-PSDHVGNRQASPPPIPATKSGPRNAVPVVVTSYCSEEASDDMETLERVLLGEDGNFVELSPGVASSPVGGLEWLWKPEVNPHRSRVPRRTECGVEGRALFENHSWQALR 247          
BLAST of mRNA_L-elsbetiae_contig1874.5483.1 vs. uniprot
Match: A0A835YGP4_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGP4_9STRA)

HSP 1 Score: 124 bits (312), Expect = 4.900e-28
Identity = 133/306 (43.46%), Postives = 163/306 (53.27%), Query Frame = 1
Query:   64 TRSFTIFHALVR----LFGTGNLPSSLVLHVLGADHREGTTPEETRSVFAELFQRLGRDEHVRDLDLLFCGPNIALRLHDTLHSFSCSHPPAERGQHVSTTPISHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------GTLVVKLRYNSGLYHDV----SELFPAPNALFLFNAGLWGYDDWEPTLEHVLDCGCKSSACRETGDVINRPP---VVVTSYCPEEASDDMETIQRVV-VLEGDERCKCLVVSGLEWLWKPEVNPHRSLVPRQTRCGVEGRVLFENQSWQAL 906
            +RS T   A++R    L G   +P  LV+HV+GAD  EGT+P ET  +F  LF+ L        +DL+  GPN+   L     + + +                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX               + V++RY  GLY +V    SE    P+   LFNAGLWGYD W PTL  +L    +   C    D   +P    VVVTSYC  EA+DD++ I+ V+ V EGD       VS   WLW PE+NPHRSLV R  R  V     +EN  WQ L
Sbjct:  427 SRSATALGAILRAQQLLSGKRAMPQHLVVHVVGADLNEGTSPPETLRLFGGLFEGLASRAACASVDLVLVGPNVPHGLDGVASARTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAECGACVAVRVRYACGLYDEVVGALSEAVRDPHVALLFNAGLWGYDTWRPTLARLLCAPNEIPCCGLDADA--QPALRIVVVTSYCASEATDDLDVIEDVLGVEEGD-------VS--RWLWLPELNPHRSLVARDRRGHVTRHEQYENHHWQCL 721          
BLAST of mRNA_L-elsbetiae_contig1874.5483.1 vs. uniprot
Match: A0A485KGC5_9STRA (Aste57867_5070 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KGC5_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.830e-21
Identity = 92/320 (28.75%), Postives = 127/320 (39.69%), Query Frame = 1
Query:   37 VGGDESLRMTRSFTIFHALVRLF----------------GTGNLPSSLVLHVLGADHREGTTPEETRSVFAELFQRL---------GR---DEHVRDLDLLFCGPNIALRLHDTLHSFSCSHPPAERGQHVSTTPISHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTLVVKLRYNSGLYHD--VSELFPAPNALFLFNAGLWGYDDWEPTLEHVLDCGCKSSACRETGDVINRPPVVVTSYCPEEASDDMETIQRVVVLEGDERCKCLVVSGLEWLWKPEVNPHRSLVPRQTRCGVEGRVLFENQSWQAL 906
            V  D S   +RSFTI HAL RL                    + P  LVLH++GAD REG    ET   F +L             G+   D    +L L+  GPN+A +LH             ER    S++  S                                      G   V+L Y + L+ +      + +P+A+F FNAG+WGYD+W PT +H++   C+ +A           P++VTSY   EA DD + I     +EG             W W+ E NP  SL PR ++  +  RVL EN  WQ  
Sbjct:    7 VASDASNVNSRSFTILHALERLDLLHAKNHALKRKHKLPDEVDPPVRLVLHIVGADFREGNDVAETLRAFDQLITAFHTAPPPTAKGKPTPDHGYDELVLVMIGPNVARKLHGV----------EERVVFPSSSSSS--------------------------------------GGKSVRLLYATELWEEYLAGPRYLSPSAVFCFNAGVWGYDEWLPTFQHMM---CEDAAL----------PILVTSYNEFEAVDDADAIDD---MEGP----------WVWRWQQEPNPFASLTPRSSQNTIANRVLHENAYWQCF 252          
BLAST of mRNA_L-elsbetiae_contig1874.5483.1 vs. uniprot
Match: A0A1V9ZX77_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZX77_9STRA)

HSP 1 Score: 100 bits (249), Expect = 6.120e-21
Identity = 76/270 (28.15%), Postives = 111/270 (41.11%), Query Frame = 1
Query:  124 SSLVLHVLGADHREGTTPEETRSVFAELFQRLGRDEHVRDLD-------LLFCGPNIALRLHDTLHSFSCSHPPAERGQHVSTTPISHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTLVVKLRYNSGLYHD--VSELFPAPNALFLFNAGLWGYDDWEPTLEHVLDCGCKSSACRETGDVINRPPVVVTSYCPEEASDDMETIQRVVVLEGDERCKCLVVSGLEWLWKPEVNPHRSLVPRQTRCGVEGRVLFENQSWQAL 906
            S LVLH++GAD+REG +  ET  VF +L    G   HV  LD       L+  GPN+  RLH T+H                T+PI   G                                       V+L Y S ++      + +  P+A+F FNAG+WGYD+W P  + ++             + I+ P +++TSY   EASDD + ++ + +                W WK E NP   L  R ++  +  RVL EN  WQ +
Sbjct:   92 SKLVLHIVGADYREGNSAAETLRVFEQLIAAFG---HVEQLDHGYTELVLVLVGPNVEQRLHGTVH----------------TSPIEGTGKS-------------------------------------VRLIYGSEIWSSYLAGQNYMVPSAIFCFNAGVWGYDEWIPAFQLMMQ------------EAIHTP-IIITSYNALEASDDADCLEDIEI-------------PFVWRWKHEPNPFLCLKQRASQHTLADRVLKENSCWQCI 279          
BLAST of mRNA_L-elsbetiae_contig1874.5483.1 vs. uniprot
Match: A0A662YGW6_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YGW6_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 9.440e-21
Identity = 84/300 (28.00%), Postives = 116/300 (38.67%), Query Frame = 1
Query:   37 VGGDESLRMTRSFTIFHALVRLF----GTGNLP---SSLVLHVLGADHREGTTPEETRSVFAELFQRLGRDEHVRDLDLLFCGPNIALRLHDTLHSFSCSHPPAERGQHVSTTPISHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTLVVKLRYNSGLYHDV---SELFPAPNALFLFNAGLWGYDDWEPTLEHVLDCGCKSSACRETGDVINRPPVVVTSYCPEEASDDMETIQRVVVLEGDERCKCLVVSGLEWLWKPEVNPHRSLVPRQTRCGVEGRVLFENQSWQAL 906
              G  S R TR+ T+   L RL      T +     ++L +H+LGADHREG TP ET  VF    + L  D     L+L+  GPN+A  LH   HS  C                                                        T  ++L Y  G + +      L+ AP+ +  FNAG+WGYD+W PT+  VL         +E      + P++VTSY   EA DD + +  +              +   WLW+ E NP  +  PR T     G VL EN  W  +
Sbjct:    3 TAGVTSARETRAATLVAWLERLHDYDVATADATEHKTTLTVHLLGADHREGNTPSETVEVFRSFSRYLAVDPRFSTLELVLVGPNLARTLHLQKHSQLCD---------------------------------------------------AAGKTCQMELSYFVGGFEEYFADKALYLAPDLVACFNAGIWGYDEWLPTIRLVL---------KEV-----QAPLLVTSYNENEAGDDEDVLDDL--------------APARWLWRAEKNPSGARTPRATN-NPAGEVLKENDYWMCV 222          
BLAST of mRNA_L-elsbetiae_contig1874.5483.1 vs. uniprot
Match: A0A1V9ZMY5_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZMY5_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.000e-20
Identity = 77/265 (29.06%), Postives = 108/265 (40.75%), Query Frame = 1
Query:  130 LVLHVLGADHREGTTPEETRSVFAEL---FQRLGRDEHVRD-LDLLFCGPNIALRLHDTLHSFSCSHPPAERGQHVSTTPISHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTLVVKLRYNSGLYHD--VSELFPAPNALFLFNAGLWGYDDWEPTLEHVLDCGCKSSACRETGDVINRPPVVVTSYCPEEASDDMETIQRVVVLEGDERCKCLVVSGLEWLWKPEVNPHRSLVPRQTRCGVEGRVLFENQSWQAL 906
            LVLH++GAD REG   +ET + FA+L   F   G  +H  D L L+  GPNI  RLH T                  T  IS  G                                       +++ Y S ++ D     L+ +P A+F FNAG+WGYD+W P  +H++         RE        P+++TSY   EA DD + ++ +              +   W WK E N    L  R T+  +  RVL EN SWQ +
Sbjct:   70 LVLHIVGADQREGRNVQETMAAFAQLITAFGNAGNHDHGYDELVLVLIGPNIETRLHST----------------SQTESISSSGKS-------------------------------------IRVVYASEVWSDHVAGSLYESPTAIFCFNAGVWGYDEWIPAFQHMM---------REE----IHTPIIITSYNELEAIDDADCLEDIE-------------TPFVWRWKHEPNAFLCLKRRATQHTLADRVLNENSSWQCI 255          
BLAST of mRNA_L-elsbetiae_contig1874.5483.1 vs. uniprot
Match: A0A8K1FAU4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FAU4_PYTOL)

HSP 1 Score: 97.1 bits (240), Expect = 6.960e-20
Identity = 74/264 (28.03%), Postives = 108/264 (40.91%), Query Frame = 1
Query:  127 SLVLHVLGADHREGTTPEETRSVFAELFQRLGRDEHVRD-LDLLFCGPNIALRLHDTLHSFSCSHPPAERGQHVSTTPISHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTLVVKLRYNSGLYHDV---SELFPAPNALFLFNAGLWGYDDWEPTLEHVLDCGCKSSACRETGDVINRPPVVVTSYCPEEASDDMETIQRVVVLEGDERCKCLVVSGLEWLWKPEVNPHRSLVPRQTRCGVEGRVLFENQSWQAL 906
            +L +H++GADHREG T  ET  +F + FQ L  D+   + L L+  GPNIA +LH+  H  +          H+ TT                                           + ++L Y  G + D    ++ +  P+    FNAG+WGYD W PTL  ++                 + P+++TSY   EASDD +      VL+         V+   W W+ E NP  SL  R TR    G +L EN  W  +
Sbjct:   53 TLTIHLVGADHREGNTVAETLGIFDQFFQYLAVDDRCYETLQLVLVGPNIAHKLHNDSHEST----------HIDTTATLEA--------------------------------KATAAAIQIELSYYVGSFDDYYGETDQYVRPDLAVCFNAGIWGYDQWLPTLRLLVHQ--------------IQTPLLITSYNENEASDDED------VLDDS-------VAPPRWFWRAEKNPFGSLTHRSTR-NEYGSILRENDFWMCV 246          
BLAST of mRNA_L-elsbetiae_contig1874.5483.1 vs. uniprot
Match: K3WG78_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WG78_GLOUD)

HSP 1 Score: 95.9 bits (237), Expect = 1.880e-19
Identity = 73/264 (27.65%), Postives = 106/264 (40.15%), Query Frame = 1
Query:  124 SSLVLHVLGADHREGTTPEETRSVFAELFQRLGRDEHVRDLDLLFCGPNIALRLHDTLHSFSCSHPPAERGQHVSTTPISHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTLVVKLRYNSGLYHDV---SELFPAPNALFLFNAGLWGYDDWEPTLEHVLDCGCKSSACRETGDVINRPPVVVTSYCPEEASDDMETIQRVVVLEGDERCKCLVVSGLEWLWKPEVNPHRSLVPRQTRCGVEGRVLFENQSWQAL 906
            S L +H++GADHREG T  ET  +F   F+ L  +     L L+  GPNIA  LH +  S+S     A  G++++    +                                       T  +++ Y  G + D      L+  P+    FNAG+WGYD+W P+L  +L                 + P++VTSY   EA DD + +                ++  +W W+ E NPH SL  R T     G VL EN  W  L
Sbjct:   53 SVLTIHLVGADHREGNTGAETCVIFDTFFRALAEEGRFATLQLVLVGPNIARLLHQS--SYSRPWTSALEGENMNIVAAN----------------------------------AAEPSTCQIEISYFVGSFDDYFLDKALYLPPDLAVCFNAGIWGYDEWLPSLRLLLHT--------------IKTPLLVTSYNENEAMDDEDVLD--------------TLAPPQWFWRAEKNPHGSLRHRATNNNF-GSVLKENDYWMCL 251          
BLAST of mRNA_L-elsbetiae_contig1874.5483.1 vs. uniprot
Match: W4H9R8_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H9R8_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 3.190e-18
Identity = 85/302 (28.15%), Postives = 116/302 (38.41%), Query Frame = 1
Query:   64 TRSFTIFHALVRLFGTGNLPS----------------SLVLHVLGADHREGTTPEETRSVFAEL---FQRLGRDEHVRDLDLLFCGPNIALRLHDTLHSFSCSHPPAERGQHVSTTPISHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTLVVKLRYNSGLYHDV--SELFPAPNALFLFNAGLWGYDDWEPTLEHVLDCGCKSSACRETGDVINRPPVVVTSYCPEEASDDMETIQRVVVLEGDERCKCLVVSGLEWLWKPEVNPHRSLVPRQTRCGVEGRVLFENQSWQAL 906
            +RSFT+  AL RL      P                  LVLH++GAD REG    ET  +F +L   FQ  G+     +L L+F GPN+A +LH              + +HVS   + +G                                        V+++Y + L+ +   S  + +P  LF FNAG+WGYD+W PT + ++                   P+VVTSY   EA DD + I  V V              + W W  E NP  S   R  R     RVL EN  WQ  
Sbjct:   33 SRSFTVLKALERLHLLHPTPPLHKHKHKLPDHVDPHVQLVLHIVGADFREGNEVSETLRIFDQLVAAFQSQGQTNTWDELVLVFIGPNVARKLHG-------------KNEHVS---LLNGKS--------------------------------------VRVQYVAELWDEYLRSRAYISPAVLFCFNAGVWGYDEWLPTFQRMVQ-------------EAPHAPIVVTSYNECEAIDDSDAIADVEV-------------PISWQWTMEANPFAS---RSARPSHHDRVLHENAYWQCF 251          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1874.5483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGC1_9PHAE2.760e-10453.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNZ1_ECTSI1.060e-7049.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YGP4_9STRA4.900e-2843.46Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A485KGC5_9STRA1.830e-2128.75Aste57867_5070 protein n=1 Tax=Aphanomyces stellat... [more]
A0A1V9ZX77_9STRA6.120e-2128.15Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A662YGW6_9STRA9.440e-2128.00Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A1V9ZMY5_9STRA2.000e-2029.06Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A8K1FAU4_PYTOL6.960e-2028.03Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WG78_GLOUD1.880e-1927.65Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
W4H9R8_9STRA3.190e-1828.15Uncharacterized protein n=5 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1874contigL-elsbetiae_contig1874:19775..21360 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score233.8
Seed ortholog evalue1.1e-58
Seed eggNOG ortholog2880.D7FNZ1
Hectar predicted targeting categoryother localisation
EggNOG OGs2AWSX@1,2RZZH@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_004890.2
Exons2
Model size966
Cds size942
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1874.5483.1prot_L-elsbetiae_contig1874.5483.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1874 19796..21357 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815780.1854386-UTR-L-elsbetiae_contig1874:19774..197951622815780.1854386-UTR-L-elsbetiae_contig1874:19774..19795Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1874 19775..19795 +
1691683097.6232734-UTR-L-elsbetiae_contig1874:19774..197951691683097.6232734-UTR-L-elsbetiae_contig1874:19774..19795Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1874 19775..19795 +
1622815780.218113-UTR-L-elsbetiae_contig1874:21357..213601622815780.218113-UTR-L-elsbetiae_contig1874:21357..21360Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1874 21358..21360 +
1691683097.667418-UTR-L-elsbetiae_contig1874:21357..213601691683097.667418-UTR-L-elsbetiae_contig1874:21357..21360Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1874 21358..21360 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815780.196791-CDS-L-elsbetiae_contig1874:19795..199351622815780.196791-CDS-L-elsbetiae_contig1874:19795..19935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1874 19796..19935 +
1691683097.6371014-CDS-L-elsbetiae_contig1874:19795..199351691683097.6371014-CDS-L-elsbetiae_contig1874:19795..19935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1874 19796..19935 +
1622815780.2077248-CDS-L-elsbetiae_contig1874:20555..213571622815780.2077248-CDS-L-elsbetiae_contig1874:20555..21357Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1874 20556..21357 +
1691683097.6556113-CDS-L-elsbetiae_contig1874:20555..213571691683097.6556113-CDS-L-elsbetiae_contig1874:20555..21357Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1874 20556..21357 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1874.5483.1

>prot_L-elsbetiae_contig1874.5483.1 ID=prot_L-elsbetiae_contig1874.5483.1|Name=mRNA_L-elsbetiae_contig1874.5483.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=314bp
MSEEGVGGDESLRMTRSFTIFHALVRLFGTGNLPSSLVLHVLGADHREGT
TPEETRSVFAELFQRLGRDEHVRDLDLLFCGPNIALRLHDTLHSFSCSHP
PAERGQHVSTTPISHGGGADGGGQQSSTLSPSPPPLLSAAAAGAEAEAAA
AAGTLVVKLRYNSGLYHDVSELFPAPNALFLFNAGLWGYDDWEPTLEHVL
DCGCKSSACRETGDVINRPPVVVTSYCPEEASDDMETIQRVVVLEGDERC
KCLVVSGLEWLWKPEVNPHRSLVPRQTRCGVEGRVLFENQSWQALRRSRG
KGASPSSRVATET*
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mRNA from alignment at L-elsbetiae_contig1874:19775..21360+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1874.5483.1 ID=mRNA_L-elsbetiae_contig1874.5483.1|Name=mRNA_L-elsbetiae_contig1874.5483.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1586bp|location=Sequence derived from alignment at L-elsbetiae_contig1874:19775..21360+ (Laminarionema elsbetiae ELsaHSoW15)
GACACACATCGACAGCGCACAATGTCGGAGGAGGGCGTTGGGGGCGATGA GAGCCTCCGCATGACGCGAAGCTTTACCATCTTCCATGCTCTTGTGAGAC TATTCGGCACTGGAAACCTGCCTTCGAGTCTCGTGCTCCACGTCCTTGGG GCGGATCACAGGTAGGAGGTACTACAAGCTTGTCGTACATATCTCTAGAC TATGTACATGGCTAAGTCTAGCAGAAGGTTTCATTTTGGACCTTGAAAGT AGTCATGCTTTTAGGTGCCAGCGTTTAGTTAACGAGTGAGGTTATGATGT CCTCTTTGTGCACACCATGTCAACAACCCCGCCGTATCAACTCTTCACAT GACGACACAGCAGTAATTAGACTAGATACATAGATATAGGGATAGTCTAG TCCATCTAGACCTCTATGTGCGTATAGACTAGTATATCTATAGATAGATC TACAACAGGTACGTAGTCAACTTACACGTTGCGTAGGCTAGCTCTGCGGC TGTACTACACTGCTAGGCTCCCTAGATACTACAAACCGCTGACTGACGTG TGGGCGAAGCGCCACATAAGTTTATCTGCCTTGACTACGATCGCGAAAGC AAATAGTAGCTTGTGTCGAAGCGAAATAAGAACAAGCGACTTATTGTAGA AGTCACCCGCTGTGTGTAGTGGCAGTCCTCATCCCTCGGTACAGTGTGTA CCTATGTGTAACCCTCGTGACCGGTCAGTCCCGAATCTGCCACCTTTTTT TGCTGTCGTCCTTGTGCAAACATAATCGCAGAGAGGGCACAACACCGGAA GAAACGCGGTCCGTGTTTGCAGAGCTCTTCCAACGTCTCGGGCGAGACGA GCACGTGCGGGACCTGGATCTGCTCTTCTGTGGCCCCAACATTGCTTTGC GCCTGCATGACACGCTTCACAGCTTCTCCTGTTCCCACCCTCCCGCCGAA AGGGGACAACACGTCAGCACCACTCCCATCAGCCACGGTGGTGGAGCCGA CGGCGGAGGACAACAAAGTTCGACTTTGTCGCCATCACCACCACCACTAC TATCAGCAGCAGCAGCAGGAGCAGAAGCAGAAGCAGCAGCAGCAGCGGGG ACGCTCGTGGTCAAGCTCCGCTACAACTCCGGCCTCTACCACGACGTGTC CGAGCTGTTCCCCGCTCCAAACGCCCTGTTTCTCTTCAACGCGGGTCTTT GGGGCTACGACGACTGGGAACCCACGCTAGAACACGTTCTCGACTGCGGG TGCAAAAGTTCCGCTTGCCGTGAAACCGGTGACGTCATCAATCGACCACC GGTGGTCGTAACAAGCTACTGCCCAGAGGAGGCCTCCGACGACATGGAAA CGATCCAGAGGGTAGTAGTGCTGGAAGGCGACGAACGTTGCAAGTGCTTG GTAGTTAGCGGGCTAGAGTGGTTGTGGAAACCGGAGGTAAATCCGCATCG ATCATTGGTACCGAGGCAGACCAGGTGTGGGGTGGAGGGGAGAGTTTTGT TCGAAAACCAGAGCTGGCAGGCCCTGCGCCGGTCGCGTGGCAAAGGTGCC TCGCCCTCCTCGCGGGTTGCTACAGAAACGTGACTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1874:19775..21360+

>mRNA_L-elsbetiae_contig1874.5483.1 ID=mRNA_L-elsbetiae_contig1874.5483.1|Name=mRNA_L-elsbetiae_contig1874.5483.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1884bp|location=Sequence derived from alignment at L-elsbetiae_contig1874:19775..21360+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGGAGGAGGGCGTTGGGGGCGATGAGAGCCTCCGCATGACGCGAAG
CTTTACCATCTTCCATGCTCTTGTGAGACTATTCGGCACTGGAAACCTGC
CTTCGAGTCTCGTGCTCCACGTCCTTGGGGCGGATCACAGATGTCGGAGG
AGGGCGTTGGGGGCGATGAGAGCCTCCGCATGACGCGAAGCTTTACCATC
TTCCATGCTCTTGTGAGACTATTCGGCACTGGAAACCTGCCTTCGAGTCT
CGTGCTCCACGTCCTTGGGGCGGATCACAGAGAGGGCACAACACCGGAAG
AAACGCGGTCCGTGTTTGCAGAGCTCTTCCAACGTCTCGGGCGAGACGAG
CACGTGCGGGACCTGGATCTGCTCTTCTGTGGCCCCAACATTGCTTTGCG
CCTGCATGACACGCTTCACAGCTTCTCCTGTTCCCACCCTCCCGCCGAAA
GGGGACAACACGTCAGCACCACTCCCATCAGCCACGGTGGTGGAGCCGAC
GGCGGAGGACAACAAAGTTCGACTTTGTCGCCATCACCACCACCACTACT
ATCAGCAGCAGCAGCAGGAGCAGAAGCAGAAGCAGCAGCAGCAGCGGGGA
CGCTCGTGGTCAAGCTCCGCTACAACTCCGGCCTCTACCACGACGTGTCC
GAGCTGTTCCCCGCTCCAAACGCCCTGTTTCTCTTCAACGCGGGTCTTTG
GGGCTACGACGACTGGGAACCCACGCTAGAACACGTTCTCGACTGCGGGT
GCAAAAGTTCCGCTTGCCGTGAAACCGGTGACGTCATCAATCGACCACCG
GTGGTCGTAACAAGCTACTGCCCAGAGGAGGCCTCCGACGACATGGAAAC
GATCCAGAGGGTAGTAGTGCTGGAAGGCGACGAACGTTGCAAGTGCTTGG
TAGTTAGCGGGCTAGAGTGGTTGTGGAAACCGGAGGTAAATCCGCATCGA
TCATTGGTACCGAGGCAGACCAGGTGTGGGGTGGAGGGGAGAGTTTTGTT
CGAAAACCAGAGCTGGCAGGCCCTGCGCCGGTCGCGTGGCAAAGGTGCCT
CGCCCTCCTCGCGGGTTGCTACAGAAACGTGAAGAGGGCACAACACCGGA
AGAAACGCGGTCCGTGTTTGCAGAGCTCTTCCAACGTCTCGGGCGAGACG
AGCACGTGCGGGACCTGGATCTGCTCTTCTGTGGCCCCAACATTGCTTTG
CGCCTGCATGACACGCTTCACAGCTTCTCCTGTTCCCACCCTCCCGCCGA
AAGGGGACAACACGTCAGCACCACTCCCATCAGCCACGGTGGTGGAGCCG
ACGGCGGAGGACAACAAAGTTCGACTTTGTCGCCATCACCACCACCACTA
CTATCAGCAGCAGCAGCAGGAGCAGAAGCAGAAGCAGCAGCAGCAGCGGG
GACGCTCGTGGTCAAGCTCCGCTACAACTCCGGCCTCTACCACGACGTGT
CCGAGCTGTTCCCCGCTCCAAACGCCCTGTTTCTCTTCAACGCGGGTCTT
TGGGGCTACGACGACTGGGAACCCACGCTAGAACACGTTCTCGACTGCGG
GTGCAAAAGTTCCGCTTGCCGTGAAACCGGTGACGTCATCAATCGACCAC
CGGTGGTCGTAACAAGCTACTGCCCAGAGGAGGCCTCCGACGACATGGAA
ACGATCCAGAGGGTAGTAGTGCTGGAAGGCGACGAACGTTGCAAGTGCTT
GGTAGTTAGCGGGCTAGAGTGGTTGTGGAAACCGGAGGTAAATCCGCATC
GATCATTGGTACCGAGGCAGACCAGGTGTGGGGTGGAGGGGAGAGTTTTG
TTCGAAAACCAGAGCTGGCAGGCCCTGCGCCGGTCGCGTGGCAAAGGTGC
CTCGCCCTCCTCGCGGGTTGCTACAGAAACGTGA
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