mRNA_L-elsbetiae_contig1869.5464.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1869.5464.1
Unique NamemRNA_L-elsbetiae_contig1869.5464.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1869.5464.1 vs. uniprot
Match: D7FW69_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW69_ECTSI)

HSP 1 Score: 451 bits (1161), Expect = 3.420e-154
Identity = 238/317 (75.08%), Postives = 261/317 (82.33%), Query Frame = 1 
Query:    1 MKLTAGLSLF-LPAVYAFQTVPSFGVSRVGRHAPTTPFSMHAATDELVPLPVNPSAGDLSRTVSFSPSGLEDLKLVESVLQEDQVGKACVLVIPSWRHHLVQYDCLSACLEALKIPTTVQPLPDGLWAFLLQRLQVHSLRKAARKGVLEDLIAHALLRPFDYLDLALRKHSDRNHGRRITVIAPDDSAWLVRAFVNSRSTEWLKEVPLDTAVFVGGYHKSIVGELALDVFPNRPRASGSSPLLEPEGRSVRFFSLNDRKGGRVEEDGDAVGLEASISCMSFEEDTESCILQEYQVESSGWLSLLGSTSLLSLWVPRV 948
            MKLT G++ F L  VYAFQ  P  G+ + G    T      A+TD  V LPVNPSAG  SRTVSFSPS LEDL++VE +LQ+DQVG+ACVL+IPSWRHH VQYDCLSACLEALKIPT VQPLPDGLWA LLQRLQVHSLRKAARKGVLE LI HAL RPF++LDLALR HSDRN GRRITVIA DDSAWLVRAFVNSRS +W KEVPLDTAV VGGYHKSIVG+LALDVFPN P      P   P+GR V+FFSLN R+GGRV+ +GD + LEASISCMSFEED+ESCILQEY+VE SGWLSLLGSTSLLSLWVPRV
Sbjct:    1 MKLTVGVASFSLTVVYAFQARP-LGIPQGGGRRSTAAL---ASTDGWVALPVNPSAGGRSRTVSFSPSNLEDLQVVEKILQQDQVGEACVLIIPSWRHHPVQYDCLSACLEALKIPTAVQPLPDGLWALLLQRLQVHSLRKAARKGVLEQLIVHALHRPFNHLDLALRLHSDRNTGRRITVIASDDSAWLVRAFVNSRSQQWRKEVPLDTAVLVGGYHKSIVGDLALDVFPNPP------PSPPPDGRVVKFFSLNGREGGRVDGNGD-IDLEASISCMSFEEDSESCILQEYEVEHSGWLSLLGSTSLLSLWVPRV 306
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1869.5464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FW69_ECTSI3.420e-15475.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1869contigL-elsbetiae_contig1869:2333..5792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons4
Model size1600
Cds size960
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1869.5464.1prot_L-elsbetiae_contig1869.5464.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1869 2333..5152 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815777.9280453-CDS-L-elsbetiae_contig1869:2332..24481622815777.9280453-CDS-L-elsbetiae_contig1869:2332..2448Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1869 2333..2448 +
1691683095.9638407-CDS-L-elsbetiae_contig1869:2332..24481691683095.9638407-CDS-L-elsbetiae_contig1869:2332..2448Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1869 2333..2448 +
1622815777.938308-CDS-L-elsbetiae_contig1869:3092..32261622815777.938308-CDS-L-elsbetiae_contig1869:3092..3226Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1869 3093..3226 +
1691683095.972988-CDS-L-elsbetiae_contig1869:3092..32261691683095.972988-CDS-L-elsbetiae_contig1869:3092..3226Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1869 3093..3226 +
1622815777.9488623-CDS-L-elsbetiae_contig1869:3658..38101622815777.9488623-CDS-L-elsbetiae_contig1869:3658..3810Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1869 3659..3810 +
1691683095.98127-CDS-L-elsbetiae_contig1869:3658..38101691683095.98127-CDS-L-elsbetiae_contig1869:3658..3810Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1869 3659..3810 +
1622815777.9614792-CDS-L-elsbetiae_contig1869:4594..51521622815777.9614792-CDS-L-elsbetiae_contig1869:4594..5152Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1869 4595..5152 +
1691683095.989385-CDS-L-elsbetiae_contig1869:4594..51521691683095.989385-CDS-L-elsbetiae_contig1869:4594..5152Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1869 4595..5152 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815777.9730713-UTR-L-elsbetiae_contig1869:5152..57921622815777.9730713-UTR-L-elsbetiae_contig1869:5152..5792Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1869 5153..5792 +
1691683095.9976265-UTR-L-elsbetiae_contig1869:5152..57921691683095.9976265-UTR-L-elsbetiae_contig1869:5152..5792Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1869 5153..5792 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1869.5464.1

>prot_L-elsbetiae_contig1869.5464.1 ID=prot_L-elsbetiae_contig1869.5464.1|Name=mRNA_L-elsbetiae_contig1869.5464.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=320bp
MKLTAGLSLFLPAVYAFQTVPSFGVSRVGRHAPTTPFSMHAATDELVPLP
VNPSAGDLSRTVSFSPSGLEDLKLVESVLQEDQVGKACVLVIPSWRHHLV
QYDCLSACLEALKIPTTVQPLPDGLWAFLLQRLQVHSLRKAARKGVLEDL
IAHALLRPFDYLDLALRKHSDRNHGRRITVIAPDDSAWLVRAFVNSRSTE
WLKEVPLDTAVFVGGYHKSIVGELALDVFPNRPRASGSSPLLEPEGRSVR
FFSLNDRKGGRVEEDGDAVGLEASISCMSFEEDTESCILQEYQVESSGWL
SLLGSTSLLSLWVPRVFGG*
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mRNA from alignment at L-elsbetiae_contig1869:2333..5792+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1869.5464.1 ID=mRNA_L-elsbetiae_contig1869.5464.1|Name=mRNA_L-elsbetiae_contig1869.5464.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3460bp|location=Sequence derived from alignment at L-elsbetiae_contig1869:2333..5792+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGCTAACGGCAGGTCTCTCGCTGTTCCTTCCGGCTGTATATGCTTT
TCAGACAGTTCCCTCATTCGGGGTCTCCCGGGTAGGACGTCACGCGCCTA
CAACACCTTTTTCCATGTGAGACACGGGCGGAGCAAATAGTCAGAGTACA
TAATACAAACACTGACGTAACACTGACGGCAGTGGCCTGTTGCGCCCCAC
GCAACTTTGGGAGCTGTAGAATCTGCAAGATATGGGCGGAGTGCAGGTGA
TCTGCACATTAATATGCTTGGTATTTCAAAGACTAGGTCAGCACGTTGCA
GGCAATCTGCGGTATTATGTAGATAAAACATTAGATAGTTAGGTGATAAA
TAGTCTACACATGTTCTGATGTATGTATTCTAGAACATAAGCATTGTTCT
ACTCATCTATATATGTACATATATATTTATGTGTGTACAATAGTAGATGT
CCTAGAGGTAGTGTTTTATGTTCTGGTGTGCCCAGCGACGGGGATGAAAA
GGTGCTTGCGTGTCGTTCTTTATTGCTAATTCAAGAAACAAGCGCTACCA
CTCCTCGTCTCCTCTGTTGGTTCCTCTGACGGTGTTGCGCGTGATCCGAA
AGCGCCAGGCTGATATGGATAGACTATACTGCTGTGGACTACAGCCTGTT
ACTACCCAGTGTCTTGTTGAGGAATTCCTCTGACGTTCTTTCTTTTGAAT
CCTTGAGAGGCGCTGACTTGAAGCTCTTACTGGTGCACATTTTGTTTGTG
GTCGCAGCAGGCACGCAGCGACCGACGAGTTGGTCCCCTTGCCGGTGAAT
CCTTCTGCTGGTGACTTGTCTCGGACAGTCTCGTTCAGCCCGTCGGGCCT
GGAAGACCTGAAGCTGGTCGAAAGCGTTCTCCAGGAAGACCAGGGTGAGG
TAGATGTTGTTGCATCCAGGCAGAGTAAAACGTATTTACGGTTGAGAGAG
GGGTGGTGATGGTACCTTACAGGCGACACGTATCTAAACTCGAACCTTTC
TAGAGGGCCCTTCACTCTAGTCCTTGGTCGGTATCTGCGGGGACCAGACA
TGACGGTCTTCTGTGCGTAATTTCGGAGTTGGCGTTGTGGGCGCAGATCG
CCGGTGGTGTTTGTGTGTGATGATGCTGCTGTTTTGTGGTCGTCCAGACG
GCGAGACACCGGGCAGATGTAGCACCCGTTGTGTCCTAAATTCGCAGTTT
CCTTCCCAAACGTAGATAAGCCAACGACCGTGTGCAACCGCATTGCTGGG
ATTCGATCAATGTCGGCCTCACACCCCCACGCTCTTGTGCCGTTTCTCTA
TATCTGTTGTTCTTTCCTTTGGGTAGTTGGGAAGGCTTGTGTCCTCGTCA
TTCCCAGCTGGCGGCATCACCTTGTCCAGTACGACTGCCTATCGGCCTGT
TTGGAAGCGCTCAAGATCCCCACCACAGTACAGCCTCTTCCTGACGGGTT
GTGGGCTTTTCTCCTCCAACGTCTGCAGGTGATGGGTGTACTATATAGCT
CTTTGAAGCCAGATTGATTTGCCTGTGCCTGTTGTGTTGTGGCCTGGTAT
TTTCTTCCGAGCATACTCGTGTTCCGTTGCAGGAGTTATCGTGGATAGTG
GCATAAAGTCGAAACATCCCGGCCCTATTGCGAGTTACCGGTAAGCGGTG
AAGTGGAAAGGGATCGTACGGCAGGGCACGGATTTAGGGAGCTAGGTATC
TATTTAGGGTAACCAATATCCGGTGAAGAAAATAACGACGATCGGAGCAC
CCTCGATTGTGTTACGCAAGTAGAATGTATGTGAGCTGCGCGCAGGCCCA
TGGCCGTTTCGGTTCCAAGAGGCGAGGCTAACGTTAAGAATTATCATGAC
TTGCAGCGAGAGACAAAACACGGTAAGCTCCATCCCTGTGCCAGAAAGCG
TAACCTCGTTTGGACTTTGGCTGCGGTATGCTTGGGCGTCTATCCATGCA
TGCCAATGTTTGGTCATTTTCAGTTGTCTACTTGCTGCGTCGACGGCGAT
CAATCAAAGTTGTTGAATCCCCGAACGCTCCCAATATTTAGACGCATCAT
GCTTTTTTGGGGAGAGGTCCGTGGCTTTTTTGCTGCTCTCAAGGTGGCAA
GACGGTCATCTCGGAGCGATGTCAAAACCGTTCTACGCGCATTTCTTAAA
ATTGCGAGCCTCGACAAGCACTGGAAATGATCATTTCGGATGCAACCTGT
ATATGCTATCAAAAAAATGTACGAAGTTCGCACTAACCTGCTTCATTGCT
CGAACCCAACAGGTACATTCGCTGCGCAAGGCTGCGAGGAAAGGCGTCCT
AGAAGATTTGATTGCGCACGCTCTCCTTCGACCGTTTGATTACCTGGACC
TAGCGCTTAGAAAGCACTCGGACCGGAATCACGGGCGCCGAATAACCGTT
ATCGCACCCGACGACTCGGCGTGGCTTGTGAGGGCTTTTGTAAACAGTCG
CTCTACGGAATGGCTGAAGGAGGTGCCTTTAGACACGGCGGTTTTTGTAG
GTGGGTATCACAAAAGCATCGTTGGAGAGCTAGCATTGGATGTTTTTCCC
AATCGCCCACGAGCATCCGGAAGCTCACCGCTACTAGAGCCGGAGGGTCG
TTCCGTCAGGTTCTTCAGCTTGAATGACCGCAAAGGCGGCCGAGTGGAGG
AAGATGGTGACGCTGTTGGTCTTGAGGCTTCGATATCGTGTATGTCGTTT
GAAGAGGACACAGAGAGTTGTATCCTGCAAGAGTACCAAGTAGAGAGCAG
TGGGTGGCTTTCTCTGCTTGGTTCAACCTCGCTCCTAAGCCTGTGGGTGC
CTCGTGTGTTTGGTGGTTGATATTGTTGTATTGGGAACACCGGGTTGCTA
AACGTTATCGTTTTTTTCATGAAACGTTTTAGCGGTTTGTAAATATTAAT
ATTTTGGTAAGAAGTAGGAGTGGTGTTTAGTTGACTTTGTGTGCGACACA
GCCTTGCCTGTCGCGAGATTAAGGATTGAAAGCGATTGTCTCGCCGACAT
ATATATATATATAGTGTAAATTATTGACGAGATGAGTGAATATCCGATCG
TGTGGAAATGGACTCATTCATCTTCCATGTCTAGATCTCCCCGGAGGTAC
AGGACTAGAGTACTGTGTAAAGGTATCCATCCGTGTCCAATATCGGGCGC
ACTGGCCATGTAGATATCTATCTTTTTCGGCGGCTCTGGTAGTTTCTAGG
GTGCCTTTGTTTTCCCCAGGAATACAATCGGTGTGCTCGAGGACCAACAG
CTCGTTCGTCCTGTTCGGGATGCAATTTCCAACACCCGTGGGGATTATTA
TCCAAGCATCCAAACCCCAAAGTTATATCTATAGTCTACACACACACACA
CACAGTCTAGGAGTATAAGTTAGTCTAGTCTAGCACAGATGTACTAATGT
GGATGTGGTTGTGACCGTGGGATATAAGGCTGAATCAAGCAGGTCACAGT
TTTTCTGAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1869:2333..5792+

>mRNA_L-elsbetiae_contig1869.5464.1 ID=mRNA_L-elsbetiae_contig1869.5464.1|Name=mRNA_L-elsbetiae_contig1869.5464.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1920bp|location=Sequence derived from alignment at L-elsbetiae_contig1869:2333..5792+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGCTAACGGCAGGTCTCTCGCTGTTCCTTCCGGCTGTATATGCTTT
TCAGACAGTTCCCTCATTCGGGGTCTCCCGGGTAGGACGTCACGCGCCTA
CAACACCTTTTTCCATATGAAGCTAACGGCAGGTCTCTCGCTGTTCCTTC
CGGCTGTATATGCTTTTCAGACAGTTCCCTCATTCGGGGTCTCCCGGGTA
GGACGTCACGCGCCTACAACACCTTTTTCCATGCACGCAGCGACCGACGA
GTTGGTCCCCTTGCCGGTGAATCCTTCTGCTGGTGACTTGTCTCGGACAG
TCTCGTTCAGCCCGTCGGGCCTGGAAGACCTGAAGCTGGTCGAAAGCGTT
CTCCAGGAAGACCAGGGCACGCAGCGACCGACGAGTTGGTCCCCTTGCCG
GTGAATCCTTCTGCTGGTGACTTGTCTCGGACAGTCTCGTTCAGCCCGTC
GGGCCTGGAAGACCTGAAGCTGGTCGAAAGCGTTCTCCAGGAAGACCAGG
TTGGGAAGGCTTGTGTCCTCGTCATTCCCAGCTGGCGGCATCACCTTGTC
CAGTACGACTGCCTATCGGCCTGTTTGGAAGCGCTCAAGATCCCCACCAC
AGTACAGCCTCTTCCTGACGGGTTGTGGGCTTTTCTCCTCCAACGTCTGC
AGTTGGGAAGGCTTGTGTCCTCGTCATTCCCAGCTGGCGGCATCACCTTG
TCCAGTACGACTGCCTATCGGCCTGTTTGGAAGCGCTCAAGATCCCCACC
ACAGTACAGCCTCTTCCTGACGGGTTGTGGGCTTTTCTCCTCCAACGTCT
GCAGGTACATTCGCTGCGCAAGGCTGCGAGGAAAGGCGTCCTAGAAGATT
TGATTGCGCACGCTCTCCTTCGACCGTTTGATTACCTGGACCTAGCGCTT
AGAAAGCACTCGGACCGGAATCACGGGCGCCGAATAACCGTTATCGCACC
CGACGACTCGGCGTGGCTTGTGAGGGCTTTTGTAAACAGTCGCTCTACGG
AATGGCTGAAGGAGGTGCCTTTAGACACGGCGGTTTTTGTAGGTGGGTAT
CACAAAAGCATCGTTGGAGAGCTAGCATTGGATGTTTTTCCCAATCGCCC
ACGAGCATCCGGAAGCTCACCGCTACTAGAGCCGGAGGGTCGTTCCGTCA
GGTTCTTCAGCTTGAATGACCGCAAAGGCGGCCGAGTGGAGGAAGATGGT
GACGCTGTTGGTCTTGAGGCTTCGATATCGTGTATGTCGTTTGAAGAGGA
CACAGAGAGTTGTATCCTGCAAGAGTACCAAGTAGAGAGCAGTGGGTGGC
TTTCTCTGCTTGGTTCAACCTCGCTCCTAAGCCTGTGGGTGCCTCGTGTG
TTTGGTGGTTGAGTACATTCGCTGCGCAAGGCTGCGAGGAAAGGCGTCCT
AGAAGATTTGATTGCGCACGCTCTCCTTCGACCGTTTGATTACCTGGACC
TAGCGCTTAGAAAGCACTCGGACCGGAATCACGGGCGCCGAATAACCGTT
ATCGCACCCGACGACTCGGCGTGGCTTGTGAGGGCTTTTGTAAACAGTCG
CTCTACGGAATGGCTGAAGGAGGTGCCTTTAGACACGGCGGTTTTTGTAG
GTGGGTATCACAAAAGCATCGTTGGAGAGCTAGCATTGGATGTTTTTCCC
AATCGCCCACGAGCATCCGGAAGCTCACCGCTACTAGAGCCGGAGGGTCG
TTCCGTCAGGTTCTTCAGCTTGAATGACCGCAAAGGCGGCCGAGTGGAGG
AAGATGGTGACGCTGTTGGTCTTGAGGCTTCGATATCGTGTATGTCGTTT
GAAGAGGACACAGAGAGTTGTATCCTGCAAGAGTACCAAGTAGAGAGCAG
TGGGTGGCTTTCTCTGCTTGGTTCAACCTCGCTCCTAAGCCTGTGGGTGC
CTCGTGTGTTTGGTGGTTGA
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