mRNA_L-elsbetiae_contig18554.5401.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18554.5401.1
Unique NamemRNA_L-elsbetiae_contig18554.5401.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig18554.5401.1 vs. uniprot
Match: D8LP21_ECTSI (Methyl transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP21_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 1.530e-58
Identity = 89/121 (73.55%), Postives = 101/121 (83.47%), Query Frame = 1
Query:    4 VFSQVDLEIVEHPSPLPREAYGAALVFNYLHRPLIPNVRDSIKPGGLVLYKTFTWEHPSVGVRPSNPAFLLGPGELRDELFPGWEVLHFFEGVEVVEDGVVEDKATSTRRAAVSSIVCRKP 366
            V  + DLE  E+PSPLPRE +GA LVFNYLHRPL+ N+RDS+KPGGLVLYKTFTW+HPSVGVRPSNPAFLLGPGEL+DE+F GWEV+ FFEGV VVE G    + +  RR AVSSIVCRKP
Sbjct:   76 VHQETDLETEENPSPLPRETFGAVLVFNYLHRPLVANLRDSVKPGGLVLYKTFTWQHPSVGVRPSNPAFLLGPGELKDEMFAGWEVIDFFEGVVVVE-GNASAEGSGVRRVAVSSIVCRKP 195          
BLAST of mRNA_L-elsbetiae_contig18554.5401.1 vs. uniprot
Match: A0A6H5JPT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPT9_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 3.550e-58
Identity = 89/121 (73.55%), Postives = 101/121 (83.47%), Query Frame = 1
Query:    4 VFSQVDLEIVEHPSPLPREAYGAALVFNYLHRPLIPNVRDSIKPGGLVLYKTFTWEHPSVGVRPSNPAFLLGPGELRDELFPGWEVLHFFEGVEVVEDGVVEDKATSTRRAAVSSIVCRKP 366
            + +Q DLE  E+PSPLP EA+GA LVFNYLHRPL+ N+RDS++PGGLVLYKTFTW+HPSVGVRPSNPAFLLGPGEL+DE+F GWEV+ FFEGV VVE G         RRAAVSSIVCRKP
Sbjct:   94 LLAQTDLETEENPSPLPEEAFGAVLVFNYLHRPLVANLRDSVQPGGLVLYKTFTWQHPSVGVRPSNPAFLLGPGELKDEMFAGWEVIDFFEGVVVVE-GTASADGGGVRRAAVSSIVCRKP 213          
BLAST of mRNA_L-elsbetiae_contig18554.5401.1 vs. uniprot
Match: A0A7X7SNU5_9ACTN (Methyltransferase domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X7SNU5_9ACTN)

HSP 1 Score: 103 bits (258), Expect = 1.320e-25
Identity = 59/122 (48.36%), Postives = 78/122 (63.93%), Query Frame = 1
Query:    1 AVFSQVDLEIVEHPSPLPREAYGAALVFNYLHRPLIPNVRDSIKPGGLVLYKTFTWEHPSVGVRPSNPAFLLGPGELRDELFPGWEVLHFFEGVEVVEDGVVEDKATSTRRAAVSSIVCRKP 366
            A F +VDLE     +PL +E Y   LVF YLHRPL+P++R+ ++ GG+++Y+TFT E P  G +P NPA+LL PGEL    F  WE+LH FEG+       +ED      R AV+ IVCRKP
Sbjct:   68 ARFWEVDLET--DANPLRQEYYRGILVFRYLHRPLMPHIREGVRKGGVLIYETFTTEQPRYG-KPRNPAYLLEPGELTG-WFADWEILHCFEGL-------LEDP-----RRAVAQIVCRKP 173          
BLAST of mRNA_L-elsbetiae_contig18554.5401.1 vs. uniprot
Match: A0A3A5AQG0_9DELT (Class I SAM-dependent methyltransferase n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A3A5AQG0_9DELT)

HSP 1 Score: 103 bits (258), Expect = 1.350e-25
Identity = 57/120 (47.50%), Postives = 77/120 (64.17%), Query Frame = 1
Query:    7 FSQVDLEIVEHPSPLPREAYGAALVFNYLHRPLIPNVRDSIKPGGLVLYKTFTWEHPSVGVRPSNPAFLLGPGELRDELFPGWEVLHFFEGVEVVEDGVVEDKATSTRRAAVSSIVCRKP 366
            + QVDLE  E  +PL  ++YG  LVF YLHRPLIP+VR+++ PGG++LY+T+T E    G +P NP FLL PGEL + LF  W+V+H+ EG+    D             AV+ IVC+KP
Sbjct:   71 YWQVDLE-QEEENPLQGKSYGGILVFRYLHRPLIPSVREALAPGGVLLYETYTLEQARFG-KPRNPDFLLKPGEL-ERLFGDWDVIHYHEGIYKNPD------------RAVAGIVCKKP 175          
BLAST of mRNA_L-elsbetiae_contig18554.5401.1 vs. uniprot
Match: A0A2K2VVX4_9DELT (TehB domain-containing protein n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2K2VVX4_9DELT)

HSP 1 Score: 102 bits (255), Expect = 3.730e-25
Identity = 59/118 (50.00%), Postives = 75/118 (63.56%), Query Frame = 1
Query:   13 QVDLEIVEHPSPLPREAYGAALVFNYLHRPLIPNVRDSIKPGGLVLYKTFTWEHPSVGVRPSNPAFLLGPGELRDELFPGWEVLHFFEGVEVVEDGVVEDKATSTRRAAVSSIVCRKP 366
            QVDLE  E  +PLP  AYGA LVF YLHRPLIP ++ +++ GGL+LY+TFT E P  G +P NP +LL  GEL   +F  WE + +FEG+          K   TR  AV+ I+CRKP
Sbjct:   72 QVDLE-PEGVNPLPEHAYGAILVFRYLHRPLIPCIKKALRKGGLLLYETFTAEQPRFG-KPRNPDYLLQSGELG-HMFADWEEIFYFEGI----------KENPTR--AVAQIICRKP 174          
BLAST of mRNA_L-elsbetiae_contig18554.5401.1 vs. uniprot
Match: A0A7V0QL57_9DELT (Class I SAM-dependent methyltransferase n=2 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V0QL57_9DELT)

HSP 1 Score: 102 bits (255), Expect = 6.030e-25
Identity = 59/119 (49.58%), Postives = 79/119 (66.39%), Query Frame = 1
Query:    7 FSQVDLEIVEHPSPLPREAYGAALVFNYLHRPLIPNVRDSIKPGGLVLYKTFTWEHPSVGVRPSNPAFLLGPGELRDELFPGWEVLHFFEGVEVVEDGVVEDKATSTRRAAVSSIVCRK 363
            F Q DLEI +  SPLP+E +G  LVF YL+R L P +R ++KPGGL++Y+TFT + P  G +P NP+FLL PGELR  +F  W VLH+ EG+  V+D    D+A       V+ IVC+K
Sbjct:   90 FWQKDLEIGDE-SPLPQEHFGVILVFRYLYRRLFPEIRAALKPGGLLIYETFTTQQPQFG-KPKNPSFLLRPGELR-MVFGDWRVLHYIEGI--VKD---PDRA-------VAQIVCKK 193          
BLAST of mRNA_L-elsbetiae_contig18554.5401.1 vs. uniprot
Match: UPI0019D93D20 (Class I SAM-dependent methyltransferase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019D93D20)

HSP 1 Score: 101 bits (252), Expect = 2.010e-24
Identity = 59/118 (50.00%), Postives = 77/118 (65.25%), Query Frame = 1
Query:   13 QVDLEIVEHPSPLPREAYGAALVFNYLHRPLIPNVRDSIKPGGLVLYKTFTWEHPSVGVRPSNPAFLLGPGELRDELFPGWEVLHFFEGVEVVEDGVVEDKATSTRRAAVSSIVCRKP 366
            QVDLE+    +P     +G  LV+NYLHRPL+ N++ ++ PGGLV Y+TFT E    G RPSNP FLL PGELRD  F  W+VLH FEGV       VE+++ S  RA ++ +V +KP
Sbjct:   79 QVDLELTG-VNPFDDRLFGGILVYNYLHRPLMQNLKRAVLPGGLVFYETFTTEQVKFG-RPSNPDFLLRPGELRD-CFKQWQVLHDFEGV-------VENESGSGARA-IAQLVAKKP 185          
BLAST of mRNA_L-elsbetiae_contig18554.5401.1 vs. uniprot
Match: A0LGR6_SYNFM (Methyltransferase type 12 n=2 Tax=Syntrophobacter TaxID=29526 RepID=A0LGR6_SYNFM)

HSP 1 Score: 100 bits (248), Expect = 3.520e-24
Identity = 56/118 (47.46%), Postives = 76/118 (64.41%), Query Frame = 1
Query:   13 QVDLEIVEHPSPLPREAYGAALVFNYLHRPLIPNVRDSIKPGGLVLYKTFTWEHPSVGVRPSNPAFLLGPGELRDELFPGWEVLHFFEGVEVVEDGVVEDKATSTRRAAVSSIVCRKP 366
            Q DLE V   +PLP EA+GA +VF YLHRPL P +R +++ GG+++Y+TFT +H   G +P NP  LL PGELR ++F  WE +H+FEG          +K    R  AV+ IVCR+P
Sbjct:   59 QEDLE-VPGVNPLPVEAFGAIVVFRYLHRPLFPAIRKALRQGGILVYETFTADHAKFG-KPRNPDHLLQPGELR-KVFEDWETIHWFEG----------EKTDPLR--AVAQIVCRRP 161          
BLAST of mRNA_L-elsbetiae_contig18554.5401.1 vs. uniprot
Match: A0A2T5CFF8_9DELT (Methyltransf_25 domain-containing protein n=2 Tax=Desulfonatronum TaxID=66848 RepID=A0A2T5CFF8_9DELT)

HSP 1 Score: 99.8 bits (247), Expect = 7.110e-24
Identity = 58/117 (49.57%), Postives = 71/117 (60.68%), Query Frame = 1
Query:   19 DLEIVEHPSPLPREAYGAALVFNYLHRPLIPNVRDSIKPGGLVLYKTFTWEHPSVGVRPSNPAFLLGPGELRDELFPGWEVLHFFEGVEVVEDGVVEDKATSTRRAAVSSIVCRKPS 369
            DLE  +  +PLP   +GA LVF YLHRPLIP +R +++PGG V+Y+TFT + P  G  P NP  LL PGEL +E F  WEVLH FEGV    D             A++ IV RKPS
Sbjct:   80 DLEAADR-APLPENTFGAVLVFRYLHRPLIPEIRRAVRPGGYVIYETFTVDQPKFGP-PRNPDHLLKPGEL-EEWFRDWEVLHRFEGVLNDPD------------RAMARIVARKPS 181          
BLAST of mRNA_L-elsbetiae_contig18554.5401.1 vs. uniprot
Match: A0A2A4MNQ8_9GAMM (MTS domain-containing protein n=1 Tax=SAR86 cluster bacterium TaxID=2030880 RepID=A0A2A4MNQ8_9GAMM)

HSP 1 Score: 100 bits (248), Expect = 7.810e-24
Identity = 57/127 (44.88%), Postives = 79/127 (62.20%), Query Frame = 1
Query:    1 AVFSQVDLEIV-----EHPSPLPREAYGAALVFNYLHRPLIPNVRDSIKPGGLVLYKTFTWEHPSVGVRPSNPAFLLGPGELRDELFPGWEVLHFFEGVEVVEDGVVEDKATSTRRAAVSSIVCRKP 366
            A F Q+DLE           PL    +   LVFNYLHRP++P +++++KPGGL+LY+TFT+   ++G RPSN  FLL PGELR ELF  W++L++FEG           + TS +RA  + +V RKP
Sbjct:   87 AQFCQLDLEAGFLTDGVAAKPLGGRVFDTVLVFNYLHRPIMPWLKETVKPGGLILYETFTYAQAAIG-RPSNRGFLLAPGELR-ELFDNWQILYYFEG-----------EFTSPKRAK-ACLVARKP 199          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18554.5401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LP21_ECTSI1.530e-5873.55Methyl transferase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JPT9_9PHAE3.550e-5873.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7X7SNU5_9ACTN1.320e-2548.36Methyltransferase domain-containing protein n=1 Ta... [more]
A0A3A5AQG0_9DELT1.350e-2547.50Class I SAM-dependent methyltransferase n=1 Tax=De... [more]
A0A2K2VVX4_9DELT3.730e-2550.00TehB domain-containing protein n=2 Tax=Proteobacte... [more]
A0A7V0QL57_9DELT6.030e-2549.58Class I SAM-dependent methyltransferase n=2 Tax=De... [more]
UPI0019D93D202.010e-2450.00Class I SAM-dependent methyltransferase n=1 Tax=Pr... [more]
A0LGR6_SYNFM3.520e-2447.46Methyltransferase type 12 n=2 Tax=Syntrophobacter ... [more]
A0A2T5CFF8_9DELT7.110e-2449.57Methyltransf_25 domain-containing protein n=2 Tax=... [more]
A0A2A4MNQ8_9GAMM7.810e-2444.88MTS domain-containing protein n=1 Tax=SAR86 cluste... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18554contigL-elsbetiae_contig18554:2297..2677 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score115.9
Seed ortholog evalue1.3e-23
Seed eggNOG ortholog690850.Desaf_2779
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Tellurite resistance protein TehB
EggNOG OGs1QUYS@1224,2MC63@213115,2WQQU@28221,42UV8@68525,COG2890@1,COG2890@2
COG Functional cat.J
Best tax levelDesulfovibrionales
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionMethyl transferase
Ec32 orthologEc-06_006900.1
Exons1
Model size381
Cds size381
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815772.765979-CDS-L-elsbetiae_contig18554:2296..26771622815772.765979-CDS-L-elsbetiae_contig18554:2296..2677Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18554 2297..2677 -
1691683092.6118727-CDS-L-elsbetiae_contig18554:2296..26771691683092.6118727-CDS-L-elsbetiae_contig18554:2296..2677Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18554 2297..2677 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18554.5401.1prot_L-elsbetiae_contig18554.5401.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18554 2297..2677 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18554.5401.1

>prot_L-elsbetiae_contig18554.5401.1 ID=prot_L-elsbetiae_contig18554.5401.1|Name=mRNA_L-elsbetiae_contig18554.5401.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
AVFSQVDLEIVEHPSPLPREAYGAALVFNYLHRPLIPNVRDSIKPGGLVL
YKTFTWEHPSVGVRPSNPAFLLGPGELRDELFPGWEVLHFFEGVEVVEDG
VVEDKATSTRRAAVSSIVCRKPSSVS*
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mRNA from alignment at L-elsbetiae_contig18554:2297..2677-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18554.5401.1 ID=mRNA_L-elsbetiae_contig18554.5401.1|Name=mRNA_L-elsbetiae_contig18554.5401.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=381bp|location=Sequence derived from alignment at L-elsbetiae_contig18554:2297..2677- (Laminarionema elsbetiae ELsaHSoW15)
GCCGTTTTTTCACAGGTTGACCTGGAGATCGTAGAACACCCGTCACCTCT GCCCAGAGAAGCGTACGGGGCAGCGCTCGTCTTCAACTACCTTCACCGGC CCCTGATCCCGAACGTGCGCGACTCCATCAAGCCGGGAGGGCTGGTGTTG TATAAGACGTTTACGTGGGAACACCCCTCCGTCGGTGTGCGCCCATCCAA CCCGGCTTTTCTGCTCGGTCCGGGCGAACTGAGGGACGAGCTGTTCCCGG GGTGGGAAGTCCTACATTTTTTCGAGGGGGTGGAGGTGGTGGAAGACGGG GTTGTGGAAGACAAGGCAACCAGCACGCGGCGAGCGGCAGTTTCGAGCAT CGTCTGCCGAAAGCCTTCGTCGGTTAGCTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18554:2297..2677-

>mRNA_L-elsbetiae_contig18554.5401.1 ID=mRNA_L-elsbetiae_contig18554.5401.1|Name=mRNA_L-elsbetiae_contig18554.5401.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig18554:2297..2677- (Laminarionema elsbetiae ELsaHSoW15)
GCCGTTTTTTCACAGGTTGACCTGGAGATCGTAGAACACCCGTCACCTCT
GCCCAGAGAAGCGTACGGGGCAGCGCTCGTCTTCAACTACCTTCACCGGC
CCCTGATCCCGAACGTGCGCGACTCCATCAAGCCGGGAGGGCTGGTGTTG
TATAAGACGTTTACGTGGGAACACCCCTCCGTCGGTGTGCGCCCATCCAA
CCCGGCTTTTCTGCTCGGTCCGGGCGAACTGAGGGACGAGCTGTTCCCGG
GGTGGGAAGTCCTACATTTTTTCGAGGGGGTGGAGGTGGTGGAAGACGGG
GTTGTGGAAGACAAGGCAACCAGCACGCGGCGAGCGGCAGTTTCGAGCAT
CGTCTGCCGAAAGCCTTCGTCGGTTAGCTAAGCCGTTTTTTCACAGGTTG
ACCTGGAGATCGTAGAACACCCGTCACCTCTGCCCAGAGAAGCGTACGGG
GCAGCGCTCGTCTTCAACTACCTTCACCGGCCCCTGATCCCGAACGTGCG
CGACTCCATCAAGCCGGGAGGGCTGGTGTTGTATAAGACGTTTACGTGGG
AACACCCCTCCGTCGGTGTGCGCCCATCCAACCCGGCTTTTCTGCTCGGT
CCGGGCGAACTGAGGGACGAGCTGTTCCCGGGGTGGGAAGTCCTACATTT
TTTCGAGGGGGTGGAGGTGGTGGAAGACGGGGTTGTGGAAGACAAGGCAA
CCAGCACGCGGCGAGCGGCAGTTTCGAGCATCGTCTGCCGAAAGCCTTCG
TCGGTTAGCTAA
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