mRNA_L-elsbetiae_contig18505.5382.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18505.5382.1
Unique NamemRNA_L-elsbetiae_contig18505.5382.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig18505.5382.1 vs. uniprot
Match: D7G0M4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M4_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 1.880e-5
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 PNVVTYNAAIQACGSAGRWHEALGLLRAMLAEKIA 105
            PNV T+NAA+QA GSAG W EAL LLR MLAEKIA
Sbjct:  518 PNVATFNAAMQAAGSAGEWREALTLLRGMLAEKIA 552
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18505.5382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0M4_ECTSI1.880e-577.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18505contigL-elsbetiae_contig18505:580..1167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size588
Cds size588
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815771.3107297-CDS-L-elsbetiae_contig18505:579..11671622815771.3107297-CDS-L-elsbetiae_contig18505:579..1167Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18505 580..1167 -
1691683091.6938198-CDS-L-elsbetiae_contig18505:579..11671691683091.6938198-CDS-L-elsbetiae_contig18505:579..1167Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18505 580..1167 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18505.5382.1prot_L-elsbetiae_contig18505.5382.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18505 580..1167 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18505.5382.1

>prot_L-elsbetiae_contig18505.5382.1 ID=prot_L-elsbetiae_contig18505.5382.1|Name=mRNA_L-elsbetiae_contig18505.5382.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=196bp
PNVVTYNAAIQACGSAGRWHEALGLLRAMLAEKIAPNATSFTSAIAACGS
AGEWEQARRLLGAVKGAQGGTPLSVGCYNAAIRACGDAGRHEEAVEVLRE
MEADARGEGTGGTVAAPPPDATTYTAAIKASGAAHEQALLLLREMPARGL
APNRISYNAAIHACGRSGEWELAESLFAELAQLGLSPDVISYNSVI
back to top

mRNA from alignment at L-elsbetiae_contig18505:580..1167-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18505.5382.1 ID=mRNA_L-elsbetiae_contig18505.5382.1|Name=mRNA_L-elsbetiae_contig18505.5382.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig18505:580..1167- (Laminarionema elsbetiae ELsaHSoW15)
CCGAACGTCGTAACGTACAACGCGGCCATACAGGCGTGCGGGAGCGCGGG
GCGGTGGCACGAGGCTTTGGGGCTCCTGCGAGCCATGCTCGCCGAGAAGA
TAGCCCCGAACGCTACGAGCTTCACCTCGGCCATCGCCGCCTGCGGCTCC
GCGGGCGAGTGGGAGCAGGCGCGGCGGCTGCTCGGAGCCGTCAAAGGAGC
CCAGGGAGGGACGCCGCTGAGCGTCGGCTGCTACAACGCGGCAATCAGGG
CCTGCGGTGATGCCGGCCGGCACGAGGAAGCGGTCGAGGTTTTGAGGGAG
ATGGAGGCCGACGCACGGGGGGAGGGGACGGGGGGGACCGTCGCCGCTCC
GCCGCCGGACGCGACGACGTACACGGCGGCCATCAAGGCGAGCGGGGCCG
CGCACGAGCAGGCGCTCCTGCTGCTGAGAGAGATGCCGGCGAGAGGCCTG
GCCCCGAACAGGATCAGCTACAACGCCGCCATCCACGCGTGCGGCCGGAG
CGGAGAGTGGGAGCTCGCGGAGTCGCTCTTCGCGGAGCTGGCGCAGCTGG
GGCTGAGCCCAGACGTTATCAGCTACAACTCGGTGATC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig18505:580..1167-

>mRNA_L-elsbetiae_contig18505.5382.1 ID=mRNA_L-elsbetiae_contig18505.5382.1|Name=mRNA_L-elsbetiae_contig18505.5382.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1176bp|location=Sequence derived from alignment at L-elsbetiae_contig18505:580..1167- (Laminarionema elsbetiae ELsaHSoW15)
CCGAACGTCGTAACGTACAACGCGGCCATACAGGCGTGCGGGAGCGCGGG
GCGGTGGCACGAGGCTTTGGGGCTCCTGCGAGCCATGCTCGCCGAGAAGA
TAGCCCCGAACGCTACGAGCTTCACCTCGGCCATCGCCGCCTGCGGCTCC
GCGGGCGAGTGGGAGCAGGCGCGGCGGCTGCTCGGAGCCGTCAAAGGAGC
CCAGGGAGGGACGCCGCTGAGCGTCGGCTGCTACAACGCGGCAATCAGGG
CCTGCGGTGATGCCGGCCGGCACGAGGAAGCGGTCGAGGTTTTGAGGGAG
ATGGAGGCCGACGCACGGGGGGAGGGGACGGGGGGGACCGTCGCCGCTCC
GCCGCCGGACGCGACGACGTACACGGCGGCCATCAAGGCGAGCGGGGCCG
CGCACGAGCAGGCGCTCCTGCTGCTGAGAGAGATGCCGGCGAGAGGCCTG
GCCCCGAACAGGATCAGCTACAACGCCGCCATCCACGCGTGCGGCCGGAG
CGGAGAGTGGGAGCTCGCGGAGTCGCTCTTCGCGGAGCTGGCGCAGCTGG
GGCTGAGCCCAGACGTTATCAGCTACAACTCGGTGATCCCGAACGTCGTA
ACGTACAACGCGGCCATACAGGCGTGCGGGAGCGCGGGGCGGTGGCACGA
GGCTTTGGGGCTCCTGCGAGCCATGCTCGCCGAGAAGATAGCCCCGAACG
CTACGAGCTTCACCTCGGCCATCGCCGCCTGCGGCTCCGCGGGCGAGTGG
GAGCAGGCGCGGCGGCTGCTCGGAGCCGTCAAAGGAGCCCAGGGAGGGAC
GCCGCTGAGCGTCGGCTGCTACAACGCGGCAATCAGGGCCTGCGGTGATG
CCGGCCGGCACGAGGAAGCGGTCGAGGTTTTGAGGGAGATGGAGGCCGAC
GCACGGGGGGAGGGGACGGGGGGGACCGTCGCCGCTCCGCCGCCGGACGC
GACGACGTACACGGCGGCCATCAAGGCGAGCGGGGCCGCGCACGAGCAGG
CGCTCCTGCTGCTGAGAGAGATGCCGGCGAGAGGCCTGGCCCCGAACAGG
ATCAGCTACAACGCCGCCATCCACGCGTGCGGCCGGAGCGGAGAGTGGGA
GCTCGCGGAGTCGCTCTTCGCGGAGCTGGCGCAGCTGGGGCTGAGCCCAG
ACGTTATCAGCTACAACTCGGTGATC
back to top