|
Homology
BLAST of mRNA_L-elsbetiae_contig1849.5372.1 vs. uniprot
Match: A0A6H5JT36_9PHAE (Non-structural maintenance of chromosomes element 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT36_9PHAE) HSP 1 Score: 112 bits (281), Expect = 7.650e-28 Identity = 77/118 (65.25%), Postives = 93/118 (78.81%), Query Frame = 2
Query: 122 MPDKRGRQREGGGXXXXXXXXXXXSKKSKRVMDASGQTVEERRQLRLEQRNLRSVIIEQQANLGDLNKNTCRELTEENGKLFEQTNFPREAVTDGENMKLIAEGAAAQAKKVNTGAVG 475
M +KR R+REGG XXXXXXXXXXX + K VMD SGQT EERR+LRL+QR L++ IIEQQA++GDLNK+ CRELTEENGK F+QT FPREA D EN+KLIA + QA ++ +VG
Sbjct: 1 MSEKRSRRREGGXXXXXXXXXXXXXXEVK-VMDESGQTNEERRELRLKQRTLKNKIIEQQADIGDLNKDACRELTEENGKQFQQTKFPREAANDAENLKLIAGSSTGQASQLGNSSVG 117
BLAST of mRNA_L-elsbetiae_contig1849.5372.1 vs. uniprot
Match: D7G069_ECTSI (Non-structural maintenance of chromosomes element 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G069_ECTSI) HSP 1 Score: 110 bits (275), Expect = 1.430e-25 Identity = 59/89 (66.29%), Postives = 73/89 (82.02%), Query Frame = 2
Query: 209 RVMDASGQTVEERRQLRLEQRNLRSVIIEQQANLGDLNKNTCRELTEENGKLFEQTNFPREAVTDGENMKLIAEGAAAQAKKVNTGAVG 475
+VMD SGQT EERR+LRL+QR L++ IIEQQA++GDLNK+ CRELTEENGK F+QT FPREA D EN+KLIA G+A QA ++ +VG
Sbjct: 128 KVMDESGQTNEERRELRLKQRTLKNKIIEQQADIGDLNKDACRELTEENGKHFKQTKFPREAANDAENLKLIAVGSAGQACQLGNSSVG 216
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 5 |
Model size | 477 |
Cds size | 450 |
Stop | 1 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815770.1132336-UTR-L-elsbetiae_contig1849:2769..2794 | 1622815770.1132336-UTR-L-elsbetiae_contig1849:2769..2794 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1849 2770..2794 - |
1691683090.8530781-UTR-L-elsbetiae_contig1849:2769..2794 | 1691683090.8530781-UTR-L-elsbetiae_contig1849:2769..2794 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1849 2770..2794 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815770.1237416-CDS-L-elsbetiae_contig1849:2794..2872 | 1622815770.1237416-CDS-L-elsbetiae_contig1849:2794..2872 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1849 2795..2872 - |
1691683090.867648-CDS-L-elsbetiae_contig1849:2794..2872 | 1691683090.867648-CDS-L-elsbetiae_contig1849:2794..2872 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1849 2795..2872 - |
1622815770.1352122-CDS-L-elsbetiae_contig1849:4996..5064 | 1622815770.1352122-CDS-L-elsbetiae_contig1849:4996..5064 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1849 4997..5064 - |
1691683090.8783395-CDS-L-elsbetiae_contig1849:4996..5064 | 1691683090.8783395-CDS-L-elsbetiae_contig1849:4996..5064 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1849 4997..5064 - |
1622815770.1475387-CDS-L-elsbetiae_contig1849:5645..5738 | 1622815770.1475387-CDS-L-elsbetiae_contig1849:5645..5738 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1849 5646..5738 - |
1691683090.8922002-CDS-L-elsbetiae_contig1849:5645..5738 | 1691683090.8922002-CDS-L-elsbetiae_contig1849:5645..5738 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1849 5646..5738 - |
1622815770.1587827-CDS-L-elsbetiae_contig1849:7256..7442 | 1622815770.1587827-CDS-L-elsbetiae_contig1849:7256..7442 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1849 7257..7442 - |
1691683090.9006279-CDS-L-elsbetiae_contig1849:7256..7442 | 1691683090.9006279-CDS-L-elsbetiae_contig1849:7256..7442 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1849 7257..7442 - |
1622815770.1728575-CDS-L-elsbetiae_contig1849:8932..8957 | 1622815770.1728575-CDS-L-elsbetiae_contig1849:8932..8957 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1849 8933..8957 - |
1691683090.9086938-CDS-L-elsbetiae_contig1849:8932..8957 | 1691683090.9086938-CDS-L-elsbetiae_contig1849:8932..8957 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1849 8933..8957 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1849.5372.1 >prot_L-elsbetiae_contig1849.5372.1 ID=prot_L-elsbetiae_contig1849.5372.1|Name=mRNA_L-elsbetiae_contig1849.5372.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=150bp
DFVIDPFKGEETGTLTKEAKRAEHRRRGDINTNQQQQQHQHARQERAAAG GRRERRQRRQRKRCLQKIQEGDGRVRPDGRGAAAAEARAEEPEERHHRTA SESGGSEQEHLPGTDRRKRQAIRTDQLPSRGCDRRREHEAHRRGRRGAG* back to topmRNA from alignment at L-elsbetiae_contig1849:2770..8957- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1849.5372.1 ID=mRNA_L-elsbetiae_contig1849.5372.1|Name=mRNA_L-elsbetiae_contig1849.5372.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6188bp|location=Sequence derived from alignment at L-elsbetiae_contig1849:2770..8957- (Laminarionema elsbetiae ELsaHSoW15) GATTTTGTCATCGACCCCTTCAAAGGTATCGTTCATTTCCTCGAGCGTAA
TTTCTCCTCTCATGTATCTACCAGAGAGAGAGGCATCGAATTAGCGAAAA
TTTGAAAACATCGCATATTATTCGCGGCGTTCATCGAAAGGCTCAAGGTG
GAAAGGTTCGACGCCGTGGGTGCCAATAGGCGGGCGAGGCTAGAGTGCGG
GCGTGTGAATGCGTTGGATCGTCTGCAGGTTTGGGCTGTTGCTGAAGTAA
TAAGGGGTGTCGTCCGAGCGTCCGAGCGCCCACACCTCAAGACTCAAGAC
ATCCATCCCCATCCCCCGCCGTCACAGCCGTTGTTGTTTGTCGGAGCCGG
TCGTAAGTCGTCCCTCGTCATCCGCCGAATTAGGATCGGATCGGCCTTCG
AATTGGCGGACCCGTACTACAATAGAGTACACGGCAGCTGACCTAGCTTC
TGCATGAAACGTCGAGTCAGCAGTGTAACGTCGCCGTGTGGTCGCTGGTC
CGCATGCCGTAACAACTAGTACAACATGCCGTTACATTACAGCAGCAGCA
GTGGCGGCGCTAAACGAACACAGCAGTCAACGCGATTACAGATATGTAGT
CTACTATTTGGATCGCACCTCGTGCCTTGCCTCGGTGGAGATGACCTACC
TACACATACACACGCGCGGTTCGCGCGAAGATGGCGGGGGGAAGAGGAAA
CACCAGAGTATATGTAGAAGACCAGTGCAAGTTTGACCAGTGCCACAACA
ATCAATGCAAGCTCAGCTCTCTCTGTTGATGTCCTGAGCAAAAGGAAACA
CACGACCCATGTACAACAATATGTAGGAGTATAATACTCCTACTTGCACA
CGGTGGCGGTGTAGGTTGCACGCTGGCAGAGTTGTGTCTCCTCACACACA
GACAGCCCTTGGGCACCCGCCCTCCGCGGTCGTCGGAGAACAGCGGGTCA
CTCACTCATTACACGTCCGAGGACCTTGCTCTCCTATCAGTGTCACCTCC
GTGCTTGTGCAACTATCTAGGCATTGTCGTGCTTTCTGTCTAGGTTTTTG
TACACGTACATAGATACATACACATCTATCGGGGGTGTGGTGTGTGCGTT
ATTGTAGGGAAAAAAAAATCTCTGGCAGGCGGGGAGGGAGATGCTTTTTG
AGAAGAAGGGGACAAGGGAAGAAGACTCAGGAGTCCAACAGGACGACGGT
GGCGCCTAGTCCACAACGCAAGTGGGACGGCCGTTGCAGGGCGGGGGAGG
TGCAGCTGCAGCACACGGCTGGCATTATTTTTGGACAACGTGCACTACAA
TATTCGGATGTACTTCTATGTAGATATGAGATATGTATTTTTTTTTTTTT
TTGCATAAATACTAGTAGGACACCATGAAGTCGCGCCGCCTGCGCGAATT
GCGCGAACTTCACACTCCATCCTTCCCGCTGCTGCATTTTCGTTGTGCTG
ACAACCCATTGCGTGCTCGGCGCGGTGTCTTGTATATATTATACCGAACA
CCACATCATACACAGGTGAAGAGACCGGTACTTTAACGAAAGAGGCAAAA
CGAGCAGAGCACAGGCGACGCGGCGACATCAACACCAACCAACAGCAACA
ACAGCACCAGCATGCCCGACAAGAGAGGGCGGCAGCGGGAGGGCGGCGGG
AGCGGCGGCAGCGGCGGCAGCGGAAGCGGTGCCTCCAAAAAATCCAAGAG
GGTACGTTTGCACCGTCCGCATTACCGTAGGTGACACAATATACCACACC
CCCTGGACAGATTTTCAAAGTTCGATTCCTCCCCAGCAAGAAGAGCGCCA
GTGCCGAAATGGGTGGCGTTGGAAAGATCTATTCCAGCGCTGTCCGAAAA
TATGGCGTTTGGTGCTGGCACCTTCTTCGTTACGGTGTTACGGAGCTCTA
AAATTATGTCCGGTGTGTGTGGTATCTTATGTCACCTACGGTACTTCTTA
CCGGTACTGCTCAACCTCTGCCCTCCTTGCTCTTGTGTGTGTTGTGCGTG
CGTGCGTGTGTGTGCGTTGGTTTATTTGAGATCCTTGTACATACGCCACA
ATCGCCCTTTACGACTACATACGAGTCTATACGAGTCTGCATGCCTCCTT
GATGGCTCTCTAGGGTATGTGGTAGTAGAAAGCAGCAAATTAACAGCATA
GTGCAAACGCCGCTAAATAGCGTTGTCGAGATATGTATGTATGTCGCGAA
TGGAGGGGGTTTTATGTTTTATCCGGTGACGGTGCAGTTCAGGTTTTAAT
CAATATATACAAATGTCAGCAGTCTACGTCCTTCCTGTCTTGAGAAAAAG
TCAGGCTTTGTGTGTCTGTCGGCAATAAATATCCTGGATTGAGGCTCTGG
GTGGGCTCTCCCGTGCATTCGCCCGCCCTCCGAGCCTGCCGCCCGCGGAA
GCGGCCATGTAACGTAGGTGACATAAGATAAGACACCCCCTGGACCGAGA
TTGAAAGCTTGGTTACTCCGCAACGAATACGGTTCTACCCACAAACGCCA
CATTTTCGACGAGATCTTTCCAACGCCGCCCTTTTCGGGACTGACGCTCT
GCTTGCTGTGGAGTACTTGACCTTTGAAAATCGGTCCAGGGGGGTGTCTT
ATCTTATGTCACCTACGGTAACGAGATGTGATGATCTGTTCGACCACCCC
AGCCAGCGTCGTTGGTTCGCTTCGCCTGGCTGGGCTTGGCTTGGCTTGGC
TTGATCACCCGGTCAAGCATGGTCGGCCCGTGTGTGCTTTATATGTAGTC
TGCTAATTTAGTCCGCTATTTTGGTCATGTTCGAACTCGCACACCTACAG
TATGTAGCCGTGTTTTTTTTGTTACGTATGCCTACAAATACTAATGCCCC
AATACCTCCGCAAACCCTGGGACCACTGCTGTCTGTTCTCCTGGGAAGAA
AACAGGTACTAGACTAGTGGTGGCATCACGTTGTCCTTGTTTGTATACAC
TTGTAACAAAAAATGCATATTTATGCGACGGACGCCCTCTATTTTAGGCG
GTGGCCGGTGTGATCGGTGCCCCCCCCCCCCGCGCGCCCGTCCCGACCTC
CTACATACATGTATACTTCCGTCGTGAACTTGGCTGTGGCGTTTCTGACG
GCCACAAGGCGTATAAATCTGTTGGTCTGATTTCACACGCTTGCTTTTGT
GGTTGCCCTGTGTTGTTCCCGTCGTTGATTACTTTCGTGTTGGCGGCGTG
TTTTGGGCATGTGAAAAAGGTGATGGACGCGTCCGGCCAGACGGTCGAGG
AGCGGCGGCAGCTGAGGCTCGAGCAGAGGAACCTGAGGAGCGTCATCATC
GAACAGCAAGCGGTGAGGGCCGGGAGGGACGGAGAGGAGATTGTTTGTCG
CTGGAGTGAGGATGACTGGGGGTTGGGAGCTAAATATACGCAAAACAAAA
GGGAAGAGCAGAAAGAGAGGGGTACACTTAAGGTGGCCAAGGTGTGGAAA
GGGAACGAAGAAAGAGAGGACGGGGGACGGGAGGAAGTGCTGGGTACTAT
TTTTTTTTTGTGTAAGAGCTACGTATATTGTACTGCTGTACGTACGCTTA
CAAACGAAAAGGCCTAAAGGTTGTGGTTTGATCCGATGTGTCGACTTGCT
GCATGGTCGACATGGTTATGTAAGGAGTATGGAGTGGCTGCTTTCCTGAG
AGGAAAGTCTCCTGCCTGCCTTGCACGAAATGGGATCTCTGAGGTCAAGA
GTCCCATATGGTAGCTTTTTTGAAAATAAACAATGAATCAGAGATGGAAA
CCTACCCCACGCTTTTTGGTGCAGCATTCCTGCATACAATGTCAGTTCGT
TGAGACCTACGTTGTTCTGTTCCTCCTTTCTCTCAGTCTCCCTCCCCCCC
TCCCTCCCCTCCCTCCCCTCCCTCCCGCCGTTCTGTCTGTTAGAATCTGG
GGGATCTGAACAAGAACACCTGCCGGGAACTGACCGAAGAAAACGGCAAG
CTATTCGAACAGTGAGAACATACCAACTACATACATGCGGATCGCTAATC
ACACACACACACACATATCCACGAGTTTACCAGTGCGCACCGATTTGTCT
TGGGCGTCAGTAGATATATATACAAATTGGTGTCTGGGAACTTCTGTTCC
GAAACCTGAATCAGTAGGCCGTCGGTAGGCTGTCGGCCTCCAACAGCCCA
AACAGACGTCACATGACAGCAGCTGTCTCTTCCCAGTTGAAGAAAAACAC
GTCAGCAGCTGTCTCTTTTCCGTTGGAACAAAGGGCACACTGCTGAGGGG
CACAGACCTTCACAGCTGTGTTGACAAGGGCGGAGCGTCCGCAAAGAAGC
GCCCGGTTCAGTGCTGTTGCTGTGTTTTGGAGGGGAACCGTTTTCTGATC
TAAATAAAACGTGACGATTAGTTAAAAAGACCAGAGCTGTTTTTTGCGGG
AAAATAGGCGTTTGAGTTCAAAATCTTTGTTTGGTTCAAAGATCTGGGTT
CAAAAATGGACCGCCGCGCGCTCCCCACCTCTCCCCACAACCCTTCTAAG
TCGTTGGTGATCGAGAAACCGTCATATACATACCGAAAAGCTTCGAGCAT
GGCCCGCACGCCCCGCACCGAAAAAAAATACAGCAGCTGCTGCTGTATTT
CAACCTCGAAGCAGCAGCTGCTGTGCACACTGAAGCAAACAGCTGCTTCT
TTTCTGTGCTGATGCTCCCTTGAACAAAACAGAGCTGTGCCGGTCTGTGC
TCACCAGGTACAAACGCTGTCCAGTCTCCTGGCATGTGCTGCCATGCTCA
AAACAGCTGCTGTCATACTGACGTTTTTTTTTCGGGAGCCGATAGTCCAC
TAGATTCAAAATCGGAACAGGAGTTCTCAGGCTCCACTCAGCTGCTGTTT
TTTTGTTGTTTTCGGTTGTAAATTTGGGAGTACTTCTGCAGCCTTCGTCT
GTTTGCTTCCGTCTTGCATCACCCCCTGCCGCTGTGCTCTCATGAGTTCG
CTCCGAAGGGGGATCTTGTATCTACTACAAATGTAGCTGTGCTCTCATGA
GTTCGCTCCGAAGGGATCTTGTATCTAGTACAAATGTATGTAGTAATTAT
ATTTAATATTCATATACAAGCTCCCCTTCCAGACGCTGCTCAAAGCCTGG
TTCCTGTGCGTGGCTTGACCAGCAGCCCACAGACCCTGCACCGAGGGAAA
ACTGAACCTATATATTTGTCTATACGACAGGTGATCACGAGAGTTTTTTT
TTACTATAGTATCTACCTGGCAAATGCACCGGGATTCGCACGTGCCTTTC
GTTTTTCATGAGATCTCCACAACCGCTCGCTGGCTGCTCTCTGTTGTTTC
CATCGTTGCCCTGGCTGTACTCGCTGGTTGATTTGTTCCCGATTTGTTCC
CGCTGACGGCTTGTGTTGTTTTGAAGACAAACCAGGACACCAAAAGAAAA
ACTACCTCCCCGCATTGAGAGACACGGGACACTGCTGCTCGTGGTGAAAT
AACATTTCCGATACAGCAGTGATGTAATTAATATATTGGTCCGGCCAGAG
CAGAAAAAACACCTACTTGTACATAAATAAAGATAATAGGAAAGTTTAAA
CAAAGGACCGCCTACATGCGCCGGAAATTAGGTTCTATCTAGGAAAATAC
CCCTAACACTAGCGCCCTTACCCCAATCACCGACCCCCCTTTCCCGGTTT
CCATACTTCATCTCATGTGTTACATTTCCCGGTTTCCATACTTTATCTCA
TATGTTACATTTCCCGGTTTCCATACTTTTATCTCATATGTTACATTTCC
CGGTTTCCAACTTTATCTCATATGTTACATTTCCCGGTTTCCATACTTTT
ATCTCATATGTTACATTTCCCGGTTTCTATACTTTTATCTCATGTTACAT
TTCCCGGTTTCCATACTTTATCTCCATATGTTACATTTCCCGGTTTCCAT
ACTTCATCTCATTTGTTACATTTCCCGGTTTCTATACTATATCTCATATG
TTATGTAGCTGAAGACAAAAACCCTGCCTAGACTGCTGTTAATAAACCTC
CCCTTGCACAGCTAACTCTGCCAGGTCAAACACAGCAGAGTAAAATTGTT
TTCTTGTTCGCCTGCCTGCCTGCTGCCGACTTAAGGACCAACTTCCCTCG
AGAGGCTGTGACCGACGGCGAGAACATGAAGCTCATCGCCGAGGGCGCCG
CGGCGCAGGCTAAGAAGGTCAACACCGGCGCCGTCGGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1849:2770..8957- >mRNA_L-elsbetiae_contig1849.5372.1 ID=mRNA_L-elsbetiae_contig1849.5372.1|Name=mRNA_L-elsbetiae_contig1849.5372.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=900bp|location=Sequence derived from alignment at L-elsbetiae_contig1849:2770..8957- (Laminarionema elsbetiae ELsaHSoW15) GATTTTGTCATCGACCCCTTCAAAGGATTTTGTCATCGACCCCTTCAAAG GTGAAGAGACCGGTACTTTAACGAAAGAGGCAAAACGAGCAGAGCACAGG CGACGCGGCGACATCAACACCAACCAACAGCAACAACAGCACCAGCATGC CCGACAAGAGAGGGCGGCAGCGGGAGGGCGGCGGGAGCGGCGGCAGCGGC GGCAGCGGAAGCGGTGCCTCCAAAAAATCCAAGAGGGTGAAGAGACCGGT ACTTTAACGAAAGAGGCAAAACGAGCAGAGCACAGGCGACGCGGCGACAT CAACACCAACCAACAGCAACAACAGCACCAGCATGCCCGACAAGAGAGGG CGGCAGCGGGAGGGCGGCGGGAGCGGCGGCAGCGGCGGCAGCGGAAGCGG TGCCTCCAAAAAATCCAAGAGGGTGATGGACGCGTCCGGCCAGACGGTCG AGGAGCGGCGGCAGCTGAGGCTCGAGCAGAGGAACCTGAGGAGCGTCATC ATCGAACAGCAAGCGGTGATGGACGCGTCCGGCCAGACGGTCGAGGAGCG GCGGCAGCTGAGGCTCGAGCAGAGGAACCTGAGGAGCGTCATCATCGAAC AGCAAGCGAATCTGGGGGATCTGAACAAGAACACCTGCCGGGAACTGACC GAAGAAAACGGCAAGCTATTCGAACAAATCTGGGGGATCTGAACAAGAAC ACCTGCCGGGAACTGACCGAAGAAAACGGCAAGCTATTCGAACAGACCAA CTTCCCTCGAGAGGCTGTGACCGACGGCGAGAACATGAAGCTCATCGCCG AGGGCGCCGCGGCGCAGGCTAAGACCAACTTCCCTCGAGAGGCTGTGACC GACGGCGAGAACATGAAGCTCATCGCCGAGGGCGCCGCGGCGCAGGCTAA back to top
|