mRNA_L-elsbetiae_contig1849.5372.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1849.5372.1
Unique NamemRNA_L-elsbetiae_contig1849.5372.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1849.5372.1 vs. uniprot
Match: A0A6H5JT36_9PHAE (Non-structural maintenance of chromosomes element 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT36_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 7.650e-28
Identity = 77/118 (65.25%), Postives = 93/118 (78.81%), Query Frame = 2
Query:  122 MPDKRGRQREGGGXXXXXXXXXXXSKKSKRVMDASGQTVEERRQLRLEQRNLRSVIIEQQANLGDLNKNTCRELTEENGKLFEQTNFPREAVTDGENMKLIAEGAAAQAKKVNTGAVG 475
            M +KR R+REGG XXXXXXXXXXX  + K VMD SGQT EERR+LRL+QR L++ IIEQQA++GDLNK+ CRELTEENGK F+QT FPREA  D EN+KLIA  +  QA ++   +VG
Sbjct:    1 MSEKRSRRREGGXXXXXXXXXXXXXXEVK-VMDESGQTNEERRELRLKQRTLKNKIIEQQADIGDLNKDACRELTEENGKQFQQTKFPREAANDAENLKLIAGSSTGQASQLGNSSVG 117          
BLAST of mRNA_L-elsbetiae_contig1849.5372.1 vs. uniprot
Match: D7G069_ECTSI (Non-structural maintenance of chromosomes element 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G069_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 1.430e-25
Identity = 59/89 (66.29%), Postives = 73/89 (82.02%), Query Frame = 2
Query:  209 RVMDASGQTVEERRQLRLEQRNLRSVIIEQQANLGDLNKNTCRELTEENGKLFEQTNFPREAVTDGENMKLIAEGAAAQAKKVNTGAVG 475
            +VMD SGQT EERR+LRL+QR L++ IIEQQA++GDLNK+ CRELTEENGK F+QT FPREA  D EN+KLIA G+A QA ++   +VG
Sbjct:  128 KVMDESGQTNEERRELRLKQRTLKNKIIEQQADIGDLNKDACRELTEENGKHFKQTKFPREAANDAENLKLIAVGSAGQACQLGNSSVG 216          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1849.5372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JT36_9PHAE7.650e-2865.25Non-structural maintenance of chromosomes element ... [more]
D7G069_ECTSI1.430e-2566.29Non-structural maintenance of chromosomes element ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1849contigL-elsbetiae_contig1849:2770..8957 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size477
Cds size450
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1849.5372.1prot_L-elsbetiae_contig1849.5372.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1849 2795..8957 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815770.1132336-UTR-L-elsbetiae_contig1849:2769..27941622815770.1132336-UTR-L-elsbetiae_contig1849:2769..2794Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1849 2770..2794 -
1691683090.8530781-UTR-L-elsbetiae_contig1849:2769..27941691683090.8530781-UTR-L-elsbetiae_contig1849:2769..2794Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1849 2770..2794 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815770.1237416-CDS-L-elsbetiae_contig1849:2794..28721622815770.1237416-CDS-L-elsbetiae_contig1849:2794..2872Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1849 2795..2872 -
1691683090.867648-CDS-L-elsbetiae_contig1849:2794..28721691683090.867648-CDS-L-elsbetiae_contig1849:2794..2872Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1849 2795..2872 -
1622815770.1352122-CDS-L-elsbetiae_contig1849:4996..50641622815770.1352122-CDS-L-elsbetiae_contig1849:4996..5064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1849 4997..5064 -
1691683090.8783395-CDS-L-elsbetiae_contig1849:4996..50641691683090.8783395-CDS-L-elsbetiae_contig1849:4996..5064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1849 4997..5064 -
1622815770.1475387-CDS-L-elsbetiae_contig1849:5645..57381622815770.1475387-CDS-L-elsbetiae_contig1849:5645..5738Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1849 5646..5738 -
1691683090.8922002-CDS-L-elsbetiae_contig1849:5645..57381691683090.8922002-CDS-L-elsbetiae_contig1849:5645..5738Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1849 5646..5738 -
1622815770.1587827-CDS-L-elsbetiae_contig1849:7256..74421622815770.1587827-CDS-L-elsbetiae_contig1849:7256..7442Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1849 7257..7442 -
1691683090.9006279-CDS-L-elsbetiae_contig1849:7256..74421691683090.9006279-CDS-L-elsbetiae_contig1849:7256..7442Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1849 7257..7442 -
1622815770.1728575-CDS-L-elsbetiae_contig1849:8932..89571622815770.1728575-CDS-L-elsbetiae_contig1849:8932..8957Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1849 8933..8957 -
1691683090.9086938-CDS-L-elsbetiae_contig1849:8932..89571691683090.9086938-CDS-L-elsbetiae_contig1849:8932..8957Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1849 8933..8957 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1849.5372.1

>prot_L-elsbetiae_contig1849.5372.1 ID=prot_L-elsbetiae_contig1849.5372.1|Name=mRNA_L-elsbetiae_contig1849.5372.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=150bp
DFVIDPFKGEETGTLTKEAKRAEHRRRGDINTNQQQQQHQHARQERAAAG
GRRERRQRRQRKRCLQKIQEGDGRVRPDGRGAAAAEARAEEPEERHHRTA
SESGGSEQEHLPGTDRRKRQAIRTDQLPSRGCDRRREHEAHRRGRRGAG*
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mRNA from alignment at L-elsbetiae_contig1849:2770..8957-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1849.5372.1 ID=mRNA_L-elsbetiae_contig1849.5372.1|Name=mRNA_L-elsbetiae_contig1849.5372.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6188bp|location=Sequence derived from alignment at L-elsbetiae_contig1849:2770..8957- (Laminarionema elsbetiae ELsaHSoW15)
GATTTTGTCATCGACCCCTTCAAAGGTATCGTTCATTTCCTCGAGCGTAA TTTCTCCTCTCATGTATCTACCAGAGAGAGAGGCATCGAATTAGCGAAAA TTTGAAAACATCGCATATTATTCGCGGCGTTCATCGAAAGGCTCAAGGTG GAAAGGTTCGACGCCGTGGGTGCCAATAGGCGGGCGAGGCTAGAGTGCGG GCGTGTGAATGCGTTGGATCGTCTGCAGGTTTGGGCTGTTGCTGAAGTAA TAAGGGGTGTCGTCCGAGCGTCCGAGCGCCCACACCTCAAGACTCAAGAC ATCCATCCCCATCCCCCGCCGTCACAGCCGTTGTTGTTTGTCGGAGCCGG TCGTAAGTCGTCCCTCGTCATCCGCCGAATTAGGATCGGATCGGCCTTCG AATTGGCGGACCCGTACTACAATAGAGTACACGGCAGCTGACCTAGCTTC TGCATGAAACGTCGAGTCAGCAGTGTAACGTCGCCGTGTGGTCGCTGGTC CGCATGCCGTAACAACTAGTACAACATGCCGTTACATTACAGCAGCAGCA GTGGCGGCGCTAAACGAACACAGCAGTCAACGCGATTACAGATATGTAGT CTACTATTTGGATCGCACCTCGTGCCTTGCCTCGGTGGAGATGACCTACC TACACATACACACGCGCGGTTCGCGCGAAGATGGCGGGGGGAAGAGGAAA CACCAGAGTATATGTAGAAGACCAGTGCAAGTTTGACCAGTGCCACAACA ATCAATGCAAGCTCAGCTCTCTCTGTTGATGTCCTGAGCAAAAGGAAACA CACGACCCATGTACAACAATATGTAGGAGTATAATACTCCTACTTGCACA CGGTGGCGGTGTAGGTTGCACGCTGGCAGAGTTGTGTCTCCTCACACACA GACAGCCCTTGGGCACCCGCCCTCCGCGGTCGTCGGAGAACAGCGGGTCA CTCACTCATTACACGTCCGAGGACCTTGCTCTCCTATCAGTGTCACCTCC GTGCTTGTGCAACTATCTAGGCATTGTCGTGCTTTCTGTCTAGGTTTTTG TACACGTACATAGATACATACACATCTATCGGGGGTGTGGTGTGTGCGTT ATTGTAGGGAAAAAAAAATCTCTGGCAGGCGGGGAGGGAGATGCTTTTTG AGAAGAAGGGGACAAGGGAAGAAGACTCAGGAGTCCAACAGGACGACGGT GGCGCCTAGTCCACAACGCAAGTGGGACGGCCGTTGCAGGGCGGGGGAGG TGCAGCTGCAGCACACGGCTGGCATTATTTTTGGACAACGTGCACTACAA TATTCGGATGTACTTCTATGTAGATATGAGATATGTATTTTTTTTTTTTT TTGCATAAATACTAGTAGGACACCATGAAGTCGCGCCGCCTGCGCGAATT GCGCGAACTTCACACTCCATCCTTCCCGCTGCTGCATTTTCGTTGTGCTG ACAACCCATTGCGTGCTCGGCGCGGTGTCTTGTATATATTATACCGAACA CCACATCATACACAGGTGAAGAGACCGGTACTTTAACGAAAGAGGCAAAA CGAGCAGAGCACAGGCGACGCGGCGACATCAACACCAACCAACAGCAACA ACAGCACCAGCATGCCCGACAAGAGAGGGCGGCAGCGGGAGGGCGGCGGG AGCGGCGGCAGCGGCGGCAGCGGAAGCGGTGCCTCCAAAAAATCCAAGAG GGTACGTTTGCACCGTCCGCATTACCGTAGGTGACACAATATACCACACC CCCTGGACAGATTTTCAAAGTTCGATTCCTCCCCAGCAAGAAGAGCGCCA GTGCCGAAATGGGTGGCGTTGGAAAGATCTATTCCAGCGCTGTCCGAAAA TATGGCGTTTGGTGCTGGCACCTTCTTCGTTACGGTGTTACGGAGCTCTA AAATTATGTCCGGTGTGTGTGGTATCTTATGTCACCTACGGTACTTCTTA CCGGTACTGCTCAACCTCTGCCCTCCTTGCTCTTGTGTGTGTTGTGCGTG CGTGCGTGTGTGTGCGTTGGTTTATTTGAGATCCTTGTACATACGCCACA ATCGCCCTTTACGACTACATACGAGTCTATACGAGTCTGCATGCCTCCTT GATGGCTCTCTAGGGTATGTGGTAGTAGAAAGCAGCAAATTAACAGCATA GTGCAAACGCCGCTAAATAGCGTTGTCGAGATATGTATGTATGTCGCGAA TGGAGGGGGTTTTATGTTTTATCCGGTGACGGTGCAGTTCAGGTTTTAAT CAATATATACAAATGTCAGCAGTCTACGTCCTTCCTGTCTTGAGAAAAAG TCAGGCTTTGTGTGTCTGTCGGCAATAAATATCCTGGATTGAGGCTCTGG GTGGGCTCTCCCGTGCATTCGCCCGCCCTCCGAGCCTGCCGCCCGCGGAA GCGGCCATGTAACGTAGGTGACATAAGATAAGACACCCCCTGGACCGAGA TTGAAAGCTTGGTTACTCCGCAACGAATACGGTTCTACCCACAAACGCCA CATTTTCGACGAGATCTTTCCAACGCCGCCCTTTTCGGGACTGACGCTCT GCTTGCTGTGGAGTACTTGACCTTTGAAAATCGGTCCAGGGGGGTGTCTT ATCTTATGTCACCTACGGTAACGAGATGTGATGATCTGTTCGACCACCCC AGCCAGCGTCGTTGGTTCGCTTCGCCTGGCTGGGCTTGGCTTGGCTTGGC TTGATCACCCGGTCAAGCATGGTCGGCCCGTGTGTGCTTTATATGTAGTC TGCTAATTTAGTCCGCTATTTTGGTCATGTTCGAACTCGCACACCTACAG TATGTAGCCGTGTTTTTTTTGTTACGTATGCCTACAAATACTAATGCCCC AATACCTCCGCAAACCCTGGGACCACTGCTGTCTGTTCTCCTGGGAAGAA AACAGGTACTAGACTAGTGGTGGCATCACGTTGTCCTTGTTTGTATACAC TTGTAACAAAAAATGCATATTTATGCGACGGACGCCCTCTATTTTAGGCG GTGGCCGGTGTGATCGGTGCCCCCCCCCCCCGCGCGCCCGTCCCGACCTC CTACATACATGTATACTTCCGTCGTGAACTTGGCTGTGGCGTTTCTGACG GCCACAAGGCGTATAAATCTGTTGGTCTGATTTCACACGCTTGCTTTTGT GGTTGCCCTGTGTTGTTCCCGTCGTTGATTACTTTCGTGTTGGCGGCGTG TTTTGGGCATGTGAAAAAGGTGATGGACGCGTCCGGCCAGACGGTCGAGG AGCGGCGGCAGCTGAGGCTCGAGCAGAGGAACCTGAGGAGCGTCATCATC GAACAGCAAGCGGTGAGGGCCGGGAGGGACGGAGAGGAGATTGTTTGTCG CTGGAGTGAGGATGACTGGGGGTTGGGAGCTAAATATACGCAAAACAAAA GGGAAGAGCAGAAAGAGAGGGGTACACTTAAGGTGGCCAAGGTGTGGAAA GGGAACGAAGAAAGAGAGGACGGGGGACGGGAGGAAGTGCTGGGTACTAT TTTTTTTTTGTGTAAGAGCTACGTATATTGTACTGCTGTACGTACGCTTA CAAACGAAAAGGCCTAAAGGTTGTGGTTTGATCCGATGTGTCGACTTGCT GCATGGTCGACATGGTTATGTAAGGAGTATGGAGTGGCTGCTTTCCTGAG AGGAAAGTCTCCTGCCTGCCTTGCACGAAATGGGATCTCTGAGGTCAAGA GTCCCATATGGTAGCTTTTTTGAAAATAAACAATGAATCAGAGATGGAAA CCTACCCCACGCTTTTTGGTGCAGCATTCCTGCATACAATGTCAGTTCGT TGAGACCTACGTTGTTCTGTTCCTCCTTTCTCTCAGTCTCCCTCCCCCCC TCCCTCCCCTCCCTCCCCTCCCTCCCGCCGTTCTGTCTGTTAGAATCTGG GGGATCTGAACAAGAACACCTGCCGGGAACTGACCGAAGAAAACGGCAAG CTATTCGAACAGTGAGAACATACCAACTACATACATGCGGATCGCTAATC ACACACACACACACATATCCACGAGTTTACCAGTGCGCACCGATTTGTCT TGGGCGTCAGTAGATATATATACAAATTGGTGTCTGGGAACTTCTGTTCC GAAACCTGAATCAGTAGGCCGTCGGTAGGCTGTCGGCCTCCAACAGCCCA AACAGACGTCACATGACAGCAGCTGTCTCTTCCCAGTTGAAGAAAAACAC GTCAGCAGCTGTCTCTTTTCCGTTGGAACAAAGGGCACACTGCTGAGGGG CACAGACCTTCACAGCTGTGTTGACAAGGGCGGAGCGTCCGCAAAGAAGC GCCCGGTTCAGTGCTGTTGCTGTGTTTTGGAGGGGAACCGTTTTCTGATC TAAATAAAACGTGACGATTAGTTAAAAAGACCAGAGCTGTTTTTTGCGGG AAAATAGGCGTTTGAGTTCAAAATCTTTGTTTGGTTCAAAGATCTGGGTT CAAAAATGGACCGCCGCGCGCTCCCCACCTCTCCCCACAACCCTTCTAAG TCGTTGGTGATCGAGAAACCGTCATATACATACCGAAAAGCTTCGAGCAT GGCCCGCACGCCCCGCACCGAAAAAAAATACAGCAGCTGCTGCTGTATTT CAACCTCGAAGCAGCAGCTGCTGTGCACACTGAAGCAAACAGCTGCTTCT TTTCTGTGCTGATGCTCCCTTGAACAAAACAGAGCTGTGCCGGTCTGTGC TCACCAGGTACAAACGCTGTCCAGTCTCCTGGCATGTGCTGCCATGCTCA AAACAGCTGCTGTCATACTGACGTTTTTTTTTCGGGAGCCGATAGTCCAC TAGATTCAAAATCGGAACAGGAGTTCTCAGGCTCCACTCAGCTGCTGTTT TTTTGTTGTTTTCGGTTGTAAATTTGGGAGTACTTCTGCAGCCTTCGTCT GTTTGCTTCCGTCTTGCATCACCCCCTGCCGCTGTGCTCTCATGAGTTCG CTCCGAAGGGGGATCTTGTATCTACTACAAATGTAGCTGTGCTCTCATGA GTTCGCTCCGAAGGGATCTTGTATCTAGTACAAATGTATGTAGTAATTAT ATTTAATATTCATATACAAGCTCCCCTTCCAGACGCTGCTCAAAGCCTGG TTCCTGTGCGTGGCTTGACCAGCAGCCCACAGACCCTGCACCGAGGGAAA ACTGAACCTATATATTTGTCTATACGACAGGTGATCACGAGAGTTTTTTT TTACTATAGTATCTACCTGGCAAATGCACCGGGATTCGCACGTGCCTTTC GTTTTTCATGAGATCTCCACAACCGCTCGCTGGCTGCTCTCTGTTGTTTC CATCGTTGCCCTGGCTGTACTCGCTGGTTGATTTGTTCCCGATTTGTTCC CGCTGACGGCTTGTGTTGTTTTGAAGACAAACCAGGACACCAAAAGAAAA ACTACCTCCCCGCATTGAGAGACACGGGACACTGCTGCTCGTGGTGAAAT AACATTTCCGATACAGCAGTGATGTAATTAATATATTGGTCCGGCCAGAG CAGAAAAAACACCTACTTGTACATAAATAAAGATAATAGGAAAGTTTAAA CAAAGGACCGCCTACATGCGCCGGAAATTAGGTTCTATCTAGGAAAATAC CCCTAACACTAGCGCCCTTACCCCAATCACCGACCCCCCTTTCCCGGTTT CCATACTTCATCTCATGTGTTACATTTCCCGGTTTCCATACTTTATCTCA TATGTTACATTTCCCGGTTTCCATACTTTTATCTCATATGTTACATTTCC CGGTTTCCAACTTTATCTCATATGTTACATTTCCCGGTTTCCATACTTTT ATCTCATATGTTACATTTCCCGGTTTCTATACTTTTATCTCATGTTACAT TTCCCGGTTTCCATACTTTATCTCCATATGTTACATTTCCCGGTTTCCAT ACTTCATCTCATTTGTTACATTTCCCGGTTTCTATACTATATCTCATATG TTATGTAGCTGAAGACAAAAACCCTGCCTAGACTGCTGTTAATAAACCTC CCCTTGCACAGCTAACTCTGCCAGGTCAAACACAGCAGAGTAAAATTGTT TTCTTGTTCGCCTGCCTGCCTGCTGCCGACTTAAGGACCAACTTCCCTCG AGAGGCTGTGACCGACGGCGAGAACATGAAGCTCATCGCCGAGGGCGCCG CGGCGCAGGCTAAGAAGGTCAACACCGGCGCCGTCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1849:2770..8957-

>mRNA_L-elsbetiae_contig1849.5372.1 ID=mRNA_L-elsbetiae_contig1849.5372.1|Name=mRNA_L-elsbetiae_contig1849.5372.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=900bp|location=Sequence derived from alignment at L-elsbetiae_contig1849:2770..8957- (Laminarionema elsbetiae ELsaHSoW15)
GATTTTGTCATCGACCCCTTCAAAGGATTTTGTCATCGACCCCTTCAAAG
GTGAAGAGACCGGTACTTTAACGAAAGAGGCAAAACGAGCAGAGCACAGG
CGACGCGGCGACATCAACACCAACCAACAGCAACAACAGCACCAGCATGC
CCGACAAGAGAGGGCGGCAGCGGGAGGGCGGCGGGAGCGGCGGCAGCGGC
GGCAGCGGAAGCGGTGCCTCCAAAAAATCCAAGAGGGTGAAGAGACCGGT
ACTTTAACGAAAGAGGCAAAACGAGCAGAGCACAGGCGACGCGGCGACAT
CAACACCAACCAACAGCAACAACAGCACCAGCATGCCCGACAAGAGAGGG
CGGCAGCGGGAGGGCGGCGGGAGCGGCGGCAGCGGCGGCAGCGGAAGCGG
TGCCTCCAAAAAATCCAAGAGGGTGATGGACGCGTCCGGCCAGACGGTCG
AGGAGCGGCGGCAGCTGAGGCTCGAGCAGAGGAACCTGAGGAGCGTCATC
ATCGAACAGCAAGCGGTGATGGACGCGTCCGGCCAGACGGTCGAGGAGCG
GCGGCAGCTGAGGCTCGAGCAGAGGAACCTGAGGAGCGTCATCATCGAAC
AGCAAGCGAATCTGGGGGATCTGAACAAGAACACCTGCCGGGAACTGACC
GAAGAAAACGGCAAGCTATTCGAACAAATCTGGGGGATCTGAACAAGAAC
ACCTGCCGGGAACTGACCGAAGAAAACGGCAAGCTATTCGAACAGACCAA
CTTCCCTCGAGAGGCTGTGACCGACGGCGAGAACATGAAGCTCATCGCCG
AGGGCGCCGCGGCGCAGGCTAAGACCAACTTCCCTCGAGAGGCTGTGACC
GACGGCGAGAACATGAAGCTCATCGCCGAGGGCGCCGCGGCGCAGGCTAA
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