mRNA_L-elsbetiae_contig1843.5353.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1843.5353.1
Unique NamemRNA_L-elsbetiae_contig1843.5353.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1843.5353.1 vs. uniprot
Match: D7FRM9_ECTSI (40S ribosomal protein S28 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRM9_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 4.550e-9
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 2 
Query:  374 QVRVEFLDDPTRSIIRNVKGPVREGDIL 457
            QVRVEFLDDPTRSIIRNVKGPVREGDIL
Sbjct:   26 QVRVEFLDDPTRSIIRNVKGPVREGDIL 53
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BLAST of mRNA_L-elsbetiae_contig1843.5353.1 vs. uniprot
Match: A0A090L6S8_STRRB (40S ribosomal protein S28 n=2 Tax=Strongyloides TaxID=6247 RepID=A0A090L6S8_STRRB)

HSP 1 Score: 57.0 bits (136), Expect = 3.460e-8
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 2 
Query:  374 QVRVEFLDDPTRSIIRNVKGPVREGDIL 457
            QVRVEFLDDP RSIIRNVKGPVREGD+L
Sbjct:   25 QVRVEFLDDPARSIIRNVKGPVREGDVL 52
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BLAST of mRNA_L-elsbetiae_contig1843.5353.1 vs. uniprot
Match: A0A0M0K694_9EUKA (40s ribosomal protein s28 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K694_9EUKA)

HSP 1 Score: 56.6 bits (135), Expect = 4.880e-8
Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = 2 
Query:  377 VRVEFLDDPTRSIIRNVKGPVREGDIL 457
            VRVEFLDDPTRSI+RNVKGP+REGDIL
Sbjct:   26 VRVEFLDDPTRSIVRNVKGPIREGDIL 52
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BLAST of mRNA_L-elsbetiae_contig1843.5353.1 vs. uniprot
Match: F0XVZ1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVZ1_AURAN)

HSP 1 Score: 56.6 bits (135), Expect = 5.000e-8
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 2 
Query:  374 QVRVEFLDDPTRSIIRNVKGPVREGDIL 457
            QVRVEF+DDP RSIIRNVKGPVREGDIL
Sbjct:   26 QVRVEFIDDPNRSIIRNVKGPVREGDIL 53
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BLAST of mRNA_L-elsbetiae_contig1843.5353.1 vs. uniprot
Match: A0A4D9CYK0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYK0_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 7.030e-8
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 2 
Query:  374 QVRVEFLDDPTRSIIRNVKGPVREGDIL 457
            QVRVEFLDDPTRSI RNVKGPVREGD+L
Sbjct:   26 QVRVEFLDDPTRSIRRNVKGPVREGDVL 53
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BLAST of mRNA_L-elsbetiae_contig1843.5353.1 vs. uniprot
Match: A0A1M2VYG2_TRAPU (40S ribosomal protein S28-A n=3 Tax=Polyporales TaxID=5303 RepID=A0A1M2VYG2_TRAPU)

HSP 1 Score: 55.5 bits (132), Expect = 1.460e-7
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 2 
Query:  374 QVRVEFLDDPTRSIIRNVKGPVREGDIL 457
            QVRVEF+DDPTRSIIRNVKGPVRE DIL
Sbjct:   28 QVRVEFMDDPTRSIIRNVKGPVREKDIL 55
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BLAST of mRNA_L-elsbetiae_contig1843.5353.1 vs. uniprot
Match: A0A2N3N1P3_9PEZI (Uncharacterized protein n=1 Tax=Lomentospora prolificans TaxID=41688 RepID=A0A2N3N1P3_9PEZI)

HSP 1 Score: 55.8 bits (133), Expect = 1.560e-7
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 2 
Query:  374 QVRVEFLDDPTRSIIRNVKGPVREGDIL 457
            QVRVEF+DDPTRSIIRNVKGPVRE DIL
Sbjct:   28 QVRVEFMDDPTRSIIRNVKGPVREDDIL 55
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BLAST of mRNA_L-elsbetiae_contig1843.5353.1 vs. uniprot
Match: A0A3B3VFL0_9TELE (40S ribosomal protein S28 n=1 Tax=Poecilia latipinna TaxID=48699 RepID=A0A3B3VFL0_9TELE)

HSP 1 Score: 55.1 bits (131), Expect = 1.700e-7
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 2 
Query:  371 RQVRVEFLDDPTRSIIRNVKGPVREGDIL 457
            RQVRVEF+DD  RSIIRNVKGPVREGD+L
Sbjct:   19 RQVRVEFMDDSNRSIIRNVKGPVREGDVL 47
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BLAST of mRNA_L-elsbetiae_contig1843.5353.1 vs. uniprot
Match: A0A1J1IXW8_9DIPT (40S ribosomal protein S28 n=1 Tax=Clunio marinus TaxID=568069 RepID=A0A1J1IXW8_9DIPT)

HSP 1 Score: 55.1 bits (131), Expect = 1.910e-7
Identity = 25/28 (89.29%), Postives = 28/28 (100.00%), Query Frame = 2 
Query:  374 QVRVEFLDDPTRSIIRNVKGPVREGDIL 457
            QV+VEFL+DPTR+IIRNVKGPVREGDIL
Sbjct:   25 QVKVEFLNDPTRAIIRNVKGPVREGDIL 52
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BLAST of mRNA_L-elsbetiae_contig1843.5353.1 vs. uniprot
Match: E4XNQ0_OIKDI (40S ribosomal protein S28 n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4XNQ0_OIKDI)

HSP 1 Score: 55.1 bits (131), Expect = 2.060e-7
Identity = 30/54 (55.56%), Postives = 36/54 (66.67%), Query Frame = 2 
Query:  296 ARLNLYNISDTLASR*TCTECYFFLRQVRVEFLDDPTRSIIRNVKGPVREGDIL 457
            A + L  ++D L    +  +C     QV+VEFLDD  RSIIRNVKGPVREGDIL
Sbjct:    6 APVKLAKVTDVLGRTGSQGQC----TQVKVEFLDDTKRSIIRNVKGPVREGDIL 55
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1843.5353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRM9_ECTSI4.550e-9100.0040S ribosomal protein S28 n=2 Tax=Ectocarpus TaxID... [more]
A0A090L6S8_STRRB3.460e-892.8640S ribosomal protein S28 n=2 Tax=Strongyloides Ta... [more]
A0A0M0K694_9EUKA4.880e-892.5940s ribosomal protein s28 n=1 Tax=Chrysochromulina... [more]
F0XVZ1_AURAN5.000e-892.86Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A4D9CYK0_9STRA7.030e-892.86Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A1M2VYG2_TRAPU1.460e-792.8640S ribosomal protein S28-A n=3 Tax=Polyporales Ta... [more]
A0A2N3N1P3_9PEZI1.560e-792.86Uncharacterized protein n=1 Tax=Lomentospora proli... [more]
A0A3B3VFL0_9TELE1.700e-786.2140S ribosomal protein S28 n=1 Tax=Poecilia latipin... [more]
A0A1J1IXW8_9DIPT1.910e-789.2940S ribosomal protein S28 n=1 Tax=Clunio marinus T... [more]
E4XNQ0_OIKDI2.060e-755.5640S ribosomal protein S28 n=1 Tax=Oikopleura dioic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1843contigL-elsbetiae_contig1843:20832..21288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size458
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815768.1478932-CDS-L-elsbetiae_contig1843:20831..211371622815768.1478932-CDS-L-elsbetiae_contig1843:20831..21137Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1843 20832..21137 +
1691683089.594549-CDS-L-elsbetiae_contig1843:20831..211371691683089.594549-CDS-L-elsbetiae_contig1843:20831..21137Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1843 20832..21137 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815768.1608427-UTR-L-elsbetiae_contig1843:21137..212881622815768.1608427-UTR-L-elsbetiae_contig1843:21137..21288Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1843 21138..21288 +
1691683089.6045-UTR-L-elsbetiae_contig1843:21137..212881691683089.6045-UTR-L-elsbetiae_contig1843:21137..21288Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1843 21138..21288 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1843.5353.1prot_L-elsbetiae_contig1843.5353.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1843 20832..21137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1843.5353.1

>prot_L-elsbetiae_contig1843.5353.1 ID=prot_L-elsbetiae_contig1843.5353.1|Name=mRNA_L-elsbetiae_contig1843.5353.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
HRLFGYSLLHIYAVRFLVVVVDCEKCVLTRIHQNSDSATGRFVGHQVGSN
IVPVWHIGGVLPHARFRSFPFRALHTSHTHAVCVHHPLEAFSGVPVSCGT
T*
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mRNA from alignment at L-elsbetiae_contig1843:20832..21288+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1843.5353.1 ID=mRNA_L-elsbetiae_contig1843.5353.1|Name=mRNA_L-elsbetiae_contig1843.5353.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=457bp|location=Sequence derived from alignment at L-elsbetiae_contig1843:20832..21288+ (Laminarionema elsbetiae ELsaHSoW15)
CACCGTTTGTTCGGCTATAGTTTGCTTCATATTTACGCAGTCCGGTTTCT
GGTCGTTGTTGTGGATTGTGAAAAGTGTGTGCTCACACGCATCCACCAAA
ACAGCGACAGCGCAACCGGACGTTTTGTAGGCCATCAAGTCGGTAGTAAT
ATTGTACCGGTGTGGCACATTGGAGGAGTGCTACCACACGCGCGTTTTCG
AAGTTTTCCGTTCCGAGCACTTCATACTAGCCATACGCATGCGGTTTGCG
TTCATCACCCGCTGGAGGCATTTTCCGGTGTTCCGGTGTCATGTGGCACG
ACTTAACTTGTACAACATCTCCGATACCCTCGCCTCTCGCTGAACGTGTA
CTGAATGCTATTTTTTTTTGCGGCAGGTGCGCGTGGAGTTCTTGGATGAC
CCGACCCGTTCCATCATCCGCAACGTCAAGGGCCCCGTTCGCGAGGGCGA
CATCCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1843:20832..21288+

>mRNA_L-elsbetiae_contig1843.5353.1 ID=mRNA_L-elsbetiae_contig1843.5353.1|Name=mRNA_L-elsbetiae_contig1843.5353.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig1843:20832..21288+ (Laminarionema elsbetiae ELsaHSoW15)
CACCGTTTGTTCGGCTATAGTTTGCTTCATATTTACGCAGTCCGGTTTCT
GGTCGTTGTTGTGGATTGTGAAAAGTGTGTGCTCACACGCATCCACCAAA
ACAGCGACAGCGCAACCGGACGTTTTGTAGGCCATCAAGTCGGTAGTAAT
ATTGTACCGGTGTGGCACATTGGAGGAGTGCTACCACACGCGCGTTTTCG
AAGTTTTCCGTTCCGAGCACTTCATACTAGCCATACGCATGCGGTTTGCG
TTCATCACCCGCTGGAGGCATTTTCCGGTGTTCCGGTGTCATGTGGCACG
ACTTAACACCGTTTGTTCGGCTATAGTTTGCTTCATATTTACGCAGTCCG
GTTTCTGGTCGTTGTTGTGGATTGTGAAAAGTGTGTGCTCACACGCATCC
ACCAAAACAGCGACAGCGCAACCGGACGTTTTGTAGGCCATCAAGTCGGT
AGTAATATTGTACCGGTGTGGCACATTGGAGGAGTGCTACCACACGCGCG
TTTTCGAAGTTTTCCGTTCCGAGCACTTCATACTAGCCATACGCATGCGG
TTTGCGTTCATCACCCGCTGGAGGCATTTTCCGGTGTTCCGGTGTCATGT
GGCACGACTTAA
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