mRNA_L-elsbetiae_contig1841.5344.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1841.5344.1
Unique NamemRNA_L-elsbetiae_contig1841.5344.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1841.5344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1841contigL-elsbetiae_contig1841:14566..14954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size390
Cds size309
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815767.8276935-UTR-L-elsbetiae_contig1841:14565..146451622815767.8276935-UTR-L-elsbetiae_contig1841:14565..14645Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1841 14566..14645 +
1691683089.4350932-UTR-L-elsbetiae_contig1841:14565..146451691683089.4350932-UTR-L-elsbetiae_contig1841:14565..14645Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1841 14566..14645 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815767.8431485-CDS-L-elsbetiae_contig1841:14645..149541622815767.8431485-CDS-L-elsbetiae_contig1841:14645..14954Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1841 14646..14954 +
1691683089.446143-CDS-L-elsbetiae_contig1841:14645..149541691683089.446143-CDS-L-elsbetiae_contig1841:14645..14954Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1841 14646..14954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1841.5344.1prot_L-elsbetiae_contig1841.5344.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1841 14646..14954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1841.5344.1

>prot_L-elsbetiae_contig1841.5344.1 ID=prot_L-elsbetiae_contig1841.5344.1|Name=mRNA_L-elsbetiae_contig1841.5344.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MRCAEPRFLQVGMQCEIHAHRCYTPLLHLKSPGCSHATPPKYLPTPFCRT
DRAVQIYFWLSSLSRLAPCPEDHVCTAEPSASISQHVSGEHVSLSPKPWG
WRI
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mRNA from alignment at L-elsbetiae_contig1841:14566..14954+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1841.5344.1 ID=mRNA_L-elsbetiae_contig1841.5344.1|Name=mRNA_L-elsbetiae_contig1841.5344.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=389bp|location=Sequence derived from alignment at L-elsbetiae_contig1841:14566..14954+ (Laminarionema elsbetiae ELsaHSoW15)
CTTAAGCCGGCGTGCAACACTGTAGACTAGCTCAAAAGTGTTGACGTATA
CTATTGTAGTGCGTACATGTATACGTGTCGATGCGTTGTGCCGAACCCCG
ATTCTTACAAGTTGGGATGCAATGTGAGATACACGCACATAGATGCTACA
CGCCCCTTCTGCATCTGAAATCACCTGGTTGCTCCCACGCGACTCCTCCA
AAGTATCTTCCTACACCCTTTTGTCGCACTGACCGCGCCGTACAAATTTA
CTTCTGGCTCTCCAGCTTGTCTAGACTGGCCCCTTGTCCTGAAGACCATG
TCTGTACCGCCGAGCCATCGGCATCTATCTCACAACACGTATCAGGCGAA
CACGTGTCGTTGTCTCCTAAACCCTGGGGATGGAGGATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1841:14566..14954+

>mRNA_L-elsbetiae_contig1841.5344.1 ID=mRNA_L-elsbetiae_contig1841.5344.1|Name=mRNA_L-elsbetiae_contig1841.5344.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig1841:14566..14954+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTTGTGCCGAACCCCGATTCTTACAAGTTGGGATGCAATGTGAGAT
ACACGCACATAGATGCTACACGCCCCTTCTGCATCTGAAATCACCTGGTT
GCTCCCACGCGACTCCTCCAAAGTATCTTCCTACACCCTTTTGTCGCACT
GACCGCGCCGTACAAATTTACTTCTGGCTCTCCAGCTTGTCTAGACTGGC
CCCTTGTCCTGAAGACCATGTCTGTACCGCCGAGCCATCGGCATCTATCT
CACAACACGTATCAGGCGAACACGTGTCGTTGTCTCCTAAACCCTGGGGA
TGGAGGATCATGCGTTGTGCCGAACCCCGATTCTTACAAGTTGGGATGCA
ATGTGAGATACACGCACATAGATGCTACACGCCCCTTCTGCATCTGAAAT
CACCTGGTTGCTCCCACGCGACTCCTCCAAAGTATCTTCCTACACCCTTT
TGTCGCACTGACCGCGCCGTACAAATTTACTTCTGGCTCTCCAGCTTGTC
TAGACTGGCCCCTTGTCCTGAAGACCATGTCTGTACCGCCGAGCCATCGG
CATCTATCTCACAACACGTATCAGGCGAACACGTGTCGTTGTCTCCTAAA
CCCTGGGGATGGAGGATC
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