mRNA_L-elsbetiae_contig1804.5174.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1804.5174.1
Unique NamemRNA_L-elsbetiae_contig1804.5174.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1804.5174.1 vs. uniprot
Match: D7G0S7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0S7_ECTSI)

HSP 1 Score: 372 bits (955), Expect = 3.390e-125
Identity = 179/215 (83.26%), Postives = 195/215 (90.70%), Query Frame = 3
Query:    3 VSRYGEDKGKDPWDDGCWAHDIGTVEAVRTARRGSLLIATEEIDGGTFHQSVILILSHGRDQGTLGLILNRPGPQRLHSLPGLQADLAEVFGESQVFDGGPMGLGTMTVLHGANVEGSDPIMNG-VYAGGFESLVEATRQGRVPKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITELCDQPFNPLWGKLLRLMGGKYREVAQRNEPRM 644
            ++RYGED GKDPW DGCWAHDIGTVEA      G LLIATEEID GTFHQSVIL+LSH RDQGTLGLILNRPGPQRL SLPGLQ DLAEVFG+SQVFDGGPMGLGTMTVLH ANVEGSDP+++G V+AGGF++LV+ TRQG V KDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITE CD+PF+PLW KLLRLMGGKY+EVA+RNEPR+
Sbjct:  103 ITRYGEDIGKDPWSDGCWAHDIGTVEA------GCLLIATEEIDSGTFHQSVILVLSHARDQGTLGLILNRPGPQRLRSLPGLQPDLAEVFGDSQVFDGGPMGLGTMTVLHDANVEGSDPVLDGGVFAGGFDTLVDVTRQGTVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITEHCDKPFHPLWTKLLRLMGGKYQEVAKRNEPRL 311          
BLAST of mRNA_L-elsbetiae_contig1804.5174.1 vs. uniprot
Match: A0A836CNM8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNM8_9STRA)

HSP 1 Score: 180 bits (456), Expect = 1.670e-50
Identity = 95/201 (47.26%), Postives = 122/201 (60.70%), Query Frame = 3
Query:   39 WDDGCWAHDIGTVEAVRTARRGSLLIATEEIDGGTFHQSVILILSHGRDQGTLGLILNRPGPQRLHSLPGLQADLAEVFGESQVFDGGPMGLGTMTVLHGAN-VEGSDPIMNGVYAGGFESLVEATRQGRVPKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITELCDQPFNP--LWGKLLRLMGGKYREVAQRN 632
            W D  WAH+IG VE      +G +L+A E + G  FHQ+ +L+L H  + GTLGLILNRP  +R+  +PGL  D+   FG+  V  GGP+G G MT LHG     G   I  G+Y GGFE LV   ++GRV    +R  HGH+AW PGQL  EL  + W++AAAAP L+T        P  +W +LL LMGG Y EVA+RN
Sbjct:   86 WRDDAWAHEIGVVE------KGCVLLAHETLQG-VFHQTAVLVLDHDDNAGTLGLILNRPTKRRIAGVPGLGRDMQAAFGQCAVHYGGPVGAGGMTALHGVKQARGGQEIAPGLYVGGFEDLVRLAQEGRVDGSSLRLAHGHAAWGPGQLSRELRADFWYLAAAAPALVTGAGAAGRAPSRMWHQLLDLMGGSYAEVARRN 279          
BLAST of mRNA_L-elsbetiae_contig1804.5174.1 vs. uniprot
Match: A0A7S2Y026_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y026_9STRA)

HSP 1 Score: 169 bits (428), Expect = 2.590e-46
Identity = 87/211 (41.23%), Postives = 129/211 (61.14%), Query Frame = 3
Query:    3 VSRYGEDKGKDPWDDGCWAHDIGTVEAVRTARRGSLLIATEEIDGGTFHQSVILILSHGRDQGTLGLILNRPGPQRLHSLPGLQADLAEVFGESQVFDGGPMGLGTMTVLHGAN-VEGSDPIMNGVYAGGFESLVEATRQGRVPKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITELCDQPFNPLWGKLLRLMGGKYREVAQRN 632
            V++Y   K ++ W +  WAHDIG +E       G LL+A++ +D  TF QSVIL+L+H  D GT G++LNRP    + ++  +   L E FGE+ ++ GGPMGL  + V+H    VEG+  I  G+Y GG   L E   QG++   +VRF  GH+AW+PGQL+ E++   W+ A  +PEL+   C     PLW ++L LMGG+Y E+ ++N
Sbjct:   79 VAQY-SGKERENWTEDRWAHDIGQIE------NGCLLLASDVMDDDTFWQSVILVLNHDPDNGTFGIVLNRPTGAHVCNVRDIVPALREAFGEAPLYLGGPMGLDEVNVVHAVEGVEGAIEIRKGLYHGGVAGLQERAEQGQLDLAKVRFEAGHAAWNPGQLEQEIEKGWWYPAVCSPELVVRPCIGLPVPLWCQILDLMGGEYAEIGKKN 282          
BLAST of mRNA_L-elsbetiae_contig1804.5174.1 vs. uniprot
Match: A0A7S1BIP2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BIP2_9STRA)

HSP 1 Score: 127 bits (319), Expect = 4.670e-29
Identity = 76/210 (36.19%), Postives = 111/210 (52.86%), Query Frame = 3
Query:   54 WAHDIGTVEAVRTARRGSLLIATEEIDGGTFHQSVILILSHGRDQGTLGLILNRP---------GPQRLHSLPGLQADLAEVFGESQVFDGGPMGLGTMTVLHGANV-EGSDPIMNGVYAGGFESLVEATRQGRVPKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITELCDQPFNP-------LWGKLLRLMGGKYREVAQRN 632
            WAH +  VE      +G LL+A+E++ GG FHQ+V+LI+SH  + G++G+++NRP         GP R  ++P     +   F ES V  GGP+      +LHG N+ EG+  +  GV+ GG   L    R G     R   V GH+AW PGQLQ E+    W +AAA+ +LI        +P       LW ++L  M G Y+++A  N
Sbjct:  255 WAHPLSHVE------KGCLLLASEKL-GGIFHQTVVLIISHNDNLGSMGVVINRPLGKKIKELSGPARKSTIPDA---MRSSFAESTVTYGGPVQTDHYAILHGYNLAEGAVELTKGVFVGGHTDLERDVRSGCFLPMRALLVKGHAAWVPGQLQREISKGVWHIAAASSDLILRYAGAKEDPETEFPDNLWSEILSAMDGDYKKIALAN 454          
BLAST of mRNA_L-elsbetiae_contig1804.5174.1 vs. uniprot
Match: A0A835Z6U1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6U1_9STRA)

HSP 1 Score: 124 bits (311), Expect = 2.130e-28
Identity = 83/227 (36.56%), Postives = 108/227 (47.58%), Query Frame = 3
Query:   39 WDDGCWAHDIGTVEAVRTARRGSLLIATEEIDGGTFHQSVILILSHGRDQGTLGLILNRPGPQRLHSLPGLQADLAEVFGESQVFDGGPMGLGTMTVLHGAN-VEGSDPIMNGVYAGGFESLV----EAT--------------------------------RQGRVPKDRVRFVHGHSAWSPGQ---------------------LQGELDHNQWFVAAAAPELIT 545
            W  G WAHDIG VE      +G +L+A E ++G  F+Q+V+LIL H   +GTLGLI+NRP  +R+  +PGL  D+   FG+  V  GGP+G G MT LH A   +G   +   VY GG E LV    EAT                                ++G      +R   GH+AW PGQ                     L+ EL  N W+VA+AAPELIT
Sbjct:   90 WSGGKWAHDIGCVE------KGCVLLAHESLEG-VFYQTVVLILDHDDTRGTLGLIINRPTKKRIAGVPGLGRDVQRAFGDCPVLYGGPVGAGGMTALHSAGEAKGCQEVAPSVYVGGLEGLVRLAQEATPWSVVRRIAALLWRRLVNLGGKGRALRSGGVAQRGHAHGSTLRLAVGHAAWVPGQEKETASNTQAPAPLGAERLRHLKRELRANFWYVASAAPELIT 309          
BLAST of mRNA_L-elsbetiae_contig1804.5174.1 vs. uniprot
Match: R7QN66_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN66_CHOCR)

HSP 1 Score: 120 bits (300), Expect = 7.810e-28
Identity = 72/198 (36.36%), Postives = 114/198 (57.58%), Query Frame = 3
Query:   54 WAHDIGTVEAVRTARRGSLLIATEEIDGGT-----FHQSVILILSHGRDQGTLGLILNRPGPQRLHSLPGLQADLAEVFGESQVFDGGPMGLGTMTVLHG-ANVEGSDPIMNGVYAGGFESLVEATRQGRVPKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITELCDQPFNPLWGKLLRLMGGKYREVAQR 629
            WAH++  VEA      G LLIA+ E   G      F  SV+L+L+H  D+GT+G+ILNRP    + S P L+  ++     + ++ GGP+ L ++  LH  A++ G+  +++GV   G   ++    +G++  D  RF  G+S WSPGQLQ E+D   W+  A+  EL+TE      + L  KLL+LMGG++ ++ +R
Sbjct:   68 WAHEVPFVEA------GCLLIASPEHFVGEHSCSFFANSVVLVLTHHSDKGTVGVILNRPVAAAV-SEPRLRGAVSAA--PAPLYLGGPVALDSLLALHNDASIPGAGQVVDGVATSGVAEVLSRIERGQMNVDSCRFFCGYSGWSPGQLQEEVDSGVWYTCASCTELVTEKGLHRDDYLTKKLLKLMGGRFTQIGER 256          
BLAST of mRNA_L-elsbetiae_contig1804.5174.1 vs. uniprot
Match: A0A1Y1HP74_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HP74_KLENI)

HSP 1 Score: 117 bits (292), Expect = 4.270e-26
Identity = 68/198 (34.34%), Postives = 111/198 (56.06%), Query Frame = 3
Query:   48 GCWAHDIGTVEAVRTARRGSLLIATEEIDGGT---FHQSVILILSHGRDQGTLGLILNRPGPQRLHSLPGLQADLAEVFGESQVFDGGPMGLGTMTVLHG-ANVEGSDPIMNGVYAGGFESLVEATRQGRVPKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITELCDQPFNPLWGKLLRLMGGKYREVAQR 629
            G WAH +   E       G+L+IA           F+ +VIL+L HG ++G++G+ILN+P    L +L      L+      +++ GG +G G   VLH  ++++G+  ++ GVY GGFE++ E  R G+   D  R+ H ++ W PGQL+ E+    WF+ + + +L+    +    PLW ++L+LMGG Y EVA+R
Sbjct:  143 GSWAHPLVLPEV------GALVIAKPGYFNQNQQYFNHAVILLLHHG-EEGSMGIILNKPTEHTLGTLFEGIDTLSPELASGRLYLGGDVGHGATHVLHRHSDLDGTRKVVEGVYTGGFEAIGEHIRAGKSECDDYRWFHMYAGWGPGQLENEVKAGVWFLGSCSRDLLLTHSEDLKTPLWDEVLQLMGGTYAEVAKR 333          
BLAST of mRNA_L-elsbetiae_contig1804.5174.1 vs. uniprot
Match: A0A315Z7A6_9BACT (Putative transcriptional regulator n=1 Tax=Sediminitomix flava TaxID=379075 RepID=A0A315Z7A6_9BACT)

HSP 1 Score: 105 bits (262), Expect = 3.130e-23
Identity = 63/184 (34.24%), Postives = 105/184 (57.07%), Query Frame = 3
Query:   96 RRGSLLIATEEIDGGTFHQSVILILSHGRDQGTLGLILNRPGPQRLHSLPGLQADLAEVFGESQVFDGGPMGLGTMTVLHG-ANVEGSDPIMNGVYAGG-FESLVEATRQGRVPKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITELCDQPFNPLWGKLLRLMGGKYREVAQRNEPR 641
            R+G +L+A   +    F ++V+L+  H  ++G+ GL+LN+P   ++  +     +LA+   E ++F GGP+   T+  LH  ++V+G+  + NGVY GG FE L      G +  D  RF  G+S WS  QL+ EL++N W V+   P +I +   +  + LW  +L+ MGGKY+ ++  N PR
Sbjct:   14 RKGDILLAEPFMTDPNFERAVVLVCEHNEEEGSFGLVLNKPSVVQMEDI---SLNLAK---EHELFIGGPVEQDTLHYLHTMSDVKGAVKLRNGVYWGGEFEHLQFMAENGFLTTDNCRFFMGYSGWSHLQLRDELENNSWIVSHQDPSIIFK---EESDTLWQSVLKNMGGKYKVLS--NYPR 186          
BLAST of mRNA_L-elsbetiae_contig1804.5174.1 vs. uniprot
Match: A0A835XKX0_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XKX0_9CHLO)

HSP 1 Score: 104 bits (260), Expect = 2.450e-22
Identity = 66/204 (32.35%), Postives = 102/204 (50.00%), Query Frame = 3
Query:   45 DGCWAHDIGTVEAVRTARRGSLLIAT----EEIDGGTFHQSVILILSHGRDQGTLGLILNRPGPQRL-HSLPGLQADLA------EVFGESQVFDGGPMGLGTMTVLHGANVEGSDPIMNGVYAGGFESLVEATRQGRVPKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITELCDQPFNPLWGKLLRLMGGKYREVA 623
            +G WAH     EA      G LL+A+    + +      Q+V+ ++SH  ++G++GLILNRP    L     GL  ++A       VF  S ++ GG      + ++HG  +EGS  +  GV+  G  +   A   GR+P    +F  G   W PG+L+ ++    W+ AA +  L+ +   Q   PLW ++LRLMGG Y  VA
Sbjct:   44 EGLWAHSTPLPEA------GGLLLASLQGPQMLGDDRLWQTVVFVVSHSPEEGSVGLILNRPTGMVLGRKQGGLPLEMAGSVPVQRVFHNSMLYCGGFTAQQVIHLMHGHRLEGSVQVCPGVFLAGEAAATSAVEGGRLPAADFKFFAGALTWGPGELEAQVAAGAWYPAACSRSLVLKPAVQLPVPLWKEVLRLMGGLYAGVA 241          
BLAST of mRNA_L-elsbetiae_contig1804.5174.1 vs. uniprot
Match: A0A835WJ62_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WJ62_9CHLO)

HSP 1 Score: 105 bits (261), Expect = 5.160e-22
Identity = 64/196 (32.65%), Postives = 110/196 (56.12%), Query Frame = 3
Query:   54 WAHDIGTVEAVRTARRGSLLIATEEIDGGT---FHQSVILILSHGRDQGTLGLILNRPGPQRLHSLPGLQADLAEVFGESQVFDGGPMGLGTMTVLHG-ANVEGSDPIMNGVYAGGFESLVEATRQGRVPKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITELCDQPFNP-LWGKLLRLMGGKYREVAQ 626
            WAH I   E      +G+LL+A   +   +   FH++ IL+L HG D G+ G+ILNRP    +  +P L+    + F + +++ GG +G G + VLH  ++++G+  ++ GVY GG ++  +A   GR      R+   ++ W+PGQL  E     WF AAA+P+L+ +  +    P  W +++ L+GG Y E+++
Sbjct:  105 WAHIIPKPE------KGALLLAHPLLFQNSQTYFHRAAILLLEHG-DNGSYGVILNRPSTYFIRDIP-LKRPQTQ-FNDCRLYIGGDVGGGEVQVLHPHSDLQGAVEVVKGVYMGGLDAGRDAIDAGRAKAQDFRWFSAYAGWAPGQLAMECKRGVWFTAAASPKLLLKEVEHGQGPSYWHEVMTLLGGDYAELSK 291          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1804.5174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0S7_ECTSI3.390e-12583.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CNM8_9STRA1.670e-5047.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2Y026_9STRA2.590e-4641.23Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1BIP2_9STRA4.670e-2936.19Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A835Z6U1_9STRA2.130e-2836.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
R7QN66_CHOCR7.810e-2836.36Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1Y1HP74_KLENI4.270e-2634.34Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A315Z7A6_9BACT3.130e-2334.24Putative transcriptional regulator n=1 Tax=Sedimin... [more]
A0A835XKX0_9CHLO2.450e-2232.35Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A835WJ62_9CHLO5.160e-2232.65Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1804contigL-elsbetiae_contig1804:15762..20431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score204.1
Seed ortholog evalue3.4e-50
Seed eggNOG ortholog2880.D7G0S7
KEGG koko:K07735
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Uncharacterized ACR, COG1678
EggNOG OGs2QRDU@2759,COG1678@1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Ec32 ortholog descriptionProtein of unknown function UPF0301
Ec32 orthologEc-23_001700.1
Exons6
Model size1158
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1804.5174.1prot_L-elsbetiae_contig1804.5174.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1804 16273..19385 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815752.2889142-UTR-L-elsbetiae_contig1804:15761..162721622815752.2889142-UTR-L-elsbetiae_contig1804:15761..16272Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1804 15762..16272 -
1691683079.8607228-UTR-L-elsbetiae_contig1804:15761..162721691683079.8607228-UTR-L-elsbetiae_contig1804:15761..16272Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1804 15762..16272 -
1622815752.3497844-UTR-L-elsbetiae_contig1804:19385..194031622815752.3497844-UTR-L-elsbetiae_contig1804:19385..19403Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1804 19386..19403 -
1691683079.950284-UTR-L-elsbetiae_contig1804:19385..194031691683079.950284-UTR-L-elsbetiae_contig1804:19385..19403Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1804 19386..19403 -
1622815752.3594713-UTR-L-elsbetiae_contig1804:19912..200981622815752.3594713-UTR-L-elsbetiae_contig1804:19912..20098Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1804 19913..20098 -
1691683079.9588826-UTR-L-elsbetiae_contig1804:19912..200981691683079.9588826-UTR-L-elsbetiae_contig1804:19912..20098Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1804 19913..20098 -
1622815752.3693125-UTR-L-elsbetiae_contig1804:20330..204311622815752.3693125-UTR-L-elsbetiae_contig1804:20330..20431Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1804 20331..20431 -
1691683079.9692395-UTR-L-elsbetiae_contig1804:20330..204311691683079.9692395-UTR-L-elsbetiae_contig1804:20330..20431Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1804 20331..20431 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815752.303323-CDS-L-elsbetiae_contig1804:16272..163351622815752.303323-CDS-L-elsbetiae_contig1804:16272..16335Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1804 16273..16335 -
1691683079.8851697-CDS-L-elsbetiae_contig1804:16272..163351691683079.8851697-CDS-L-elsbetiae_contig1804:16272..16335Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1804 16273..16335 -
1622815752.3149245-CDS-L-elsbetiae_contig1804:17276..173511622815752.3149245-CDS-L-elsbetiae_contig1804:17276..17351Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1804 17277..17351 -
1691683079.900822-CDS-L-elsbetiae_contig1804:17276..173511691683079.900822-CDS-L-elsbetiae_contig1804:17276..17351Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1804 17277..17351 -
1622815752.3274784-CDS-L-elsbetiae_contig1804:18223..183131622815752.3274784-CDS-L-elsbetiae_contig1804:18223..18313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1804 18224..18313 -
1691683079.91972-CDS-L-elsbetiae_contig1804:18223..183131691683079.91972-CDS-L-elsbetiae_contig1804:18223..18313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1804 18224..18313 -
1622815752.339794-CDS-L-elsbetiae_contig1804:19271..193851622815752.339794-CDS-L-elsbetiae_contig1804:19271..19385Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1804 19272..19385 -
1691683079.935909-CDS-L-elsbetiae_contig1804:19271..193851691683079.935909-CDS-L-elsbetiae_contig1804:19271..19385Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1804 19272..19385 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1804.5174.1

>prot_L-elsbetiae_contig1804.5174.1 ID=prot_L-elsbetiae_contig1804.5174.1|Name=mRNA_L-elsbetiae_contig1804.5174.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
MGLGTMTVLHGANVEGSDPIMNGVYAGGFESLVEATRQGRVPKDRVRFVH
GHSAWSPGQLQGELDHNQWFVAAAAPELITELCDQPFNPLWGKLLRLMGG
KYREVAQRNEPRM*
back to top

mRNA from alignment at L-elsbetiae_contig1804:15762..20431-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1804.5174.1 ID=mRNA_L-elsbetiae_contig1804.5174.1|Name=mRNA_L-elsbetiae_contig1804.5174.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4670bp|location=Sequence derived from alignment at L-elsbetiae_contig1804:15762..20431- (Laminarionema elsbetiae ELsaHSoW15)
TCGTCAGCCGGTACGGGGAGGACAAAGGCAAGGACCCCTGGGACGATGGC TGCTGGGCGCACGACATAGGGACGGTGGAGGCGGTGAGAACAGCACGCCG TGCGAGTGCACGTACATACTTGATGTATTTTGCTGATTGTTTCTTCTGCT GCTGGGTGCATCGATGCGAGCGCGCTCCCGCTGTTCCTTCTACTCAACCC CAACTCTCTCACGCACTTGTGACTATTTCATCTGCAAATCACCTATCCCG GCGTAGCCTACACAGCAGCAGCTGCTGTCAGTCAAGGTCGCTGAACCCCC CCCGCCCCCCCCTACCACGCATCCCATCCACAGGGATCCCTGCTGATTGC CACGGAGGAGATCGATGGCGGAACGTTCCACCAGTCCGTGATCTTGATCC TCAGCCACGGGCGGGACCAAGGCACTCTGGGGCTAATCCTCAACAGGCCG GGTCCGCAGCGGCTACACTCCCTGCCTGGCCTGCAGGCGGACCTGGCTGA AGTTTTCGGAGAATCTCAGGTGAGTTTTTTTGGGGGGGGGGGGGGGGGTT CAGCAGGTTGGTGCGGGCTTCGGGGAGGAGTAGGCATGCGGCTGGCTATG TTTCTTAAAATAGAAGAACCGTAGACTCTTCCGGCAGCAAGGCCTCTTTT TTTCACGTTGCCCTTCAAACGTTCGGGTATCTGCTCACTGTGATCTCTCT TGTCTCTCTCCTACGTACCTCGATAACGCCCTTTCTTTAACCCAGCCCAC CAATATGCATGTACATACAACAGAGTACCGGCCCGCTGATAAGAAACCTG AAATCGGGCTCAGGCTGACTCTCTTCTATTGGCTTGGAGTCGAGCATATA ACACTTTCTTAGGTCATGCATGTGGTAGGGTTTAGTGTGCCACTTGCCGC CGAGGCTGGAGACTTTCTTAAAATAATTTGAAAATCTCAGGCTAAGTTTC TTCCTCGGACCTTCTACTCGGCGGGCCGGTGGTACTAACTGCTGTGTACC CCCTGTTCTGTTTTTTTGGCCTGTCAAGGTGTTCGATGGGGGCCCGATGG GGCTCGGCACGATGACCGTCTTGCACGGCGCCAACGTTGAGGGGAGCGAC CCCATAATGAACGGCGTCTACGCCGGCGGTTTCGAGTCTCTTGTGGAGGC GACCCGGCAGGTAAAAGCATGGCTGCGGCCCCGGCGTCTTGCTCCGCACC CATTTCGCATAAATCTGAGCTGCCGGTCCCCTCTCCAACGCCTACACCAC ACATGGCGTATAAGTAGTTCCGCACCCATTGCGCATAAATCCGAGCTGCC GAGTCCTTTTTCCACGACTACATACAGCATAAAAGTACCTACCGCTGGAC CCCTTCCTTGCCACGAAACCCCATGGCGCATGCATCAGTGCAAGTTGGCG CTGCGACGCCATTTTCGAGTGCGGCATCTATGTATCGCGCGCTCTGGGGG CGGTTTGCGGGAGCCTTTTCACGAAGTAGCCCCTCTACGGGCCTTGCTCG TTTTGTCCTCTGCCGTGTCGTATCCTTGGTGTCGCTGGCGCCCGGGGGGG AGGATTGGTTGTTGGTGCGCTGTGTCGGCGCGGACCTGAGAAATCAAGCC AAAGTTCGTTAGTGTGCAGATGAGGTTGAGAGTTGTCAAGGGATGCTGTC CGCTTCTGCAAAATAGTGTGCATTGTGGAGGTTGAGAGTGTCAAGGGAAG CTGTGCGCCTCTGCAAAATGGTGTGCATGATAAGAGTTGAGGGTGTCGAG GGATGCTGTCCGCCTCCGCGAAGCACGTGTTTAACCGGCAGTATTATCGA CCAAAGAGTCCCTTTCCCACGCTTTCAACTCCAACCTTGTCCAGTGAATA CGGCAGTGCTATCCATCCTGTTGTCCGTTCGCGCTATTCGTGTAGACACG CGTGTCCACTGTCCATCCAGTAACTGAGAAAAAGAAAACGGAAAAGGGAG GTGTTGAATCTTCTAATATTTTAGGTGTTTTTCTACTCGGCCGGCCCAAT ATTACGTCACTATAATGGAATACCGAAATTCTCACGGGAGTCCCGTCTCC AATGTGGGTTAGGTTCCATTTTTGATTATCTGCTTATCTTTCAAAACGGA AATTAACTTTTTTGACAGGGGAGGGTGCCGAAGGACCGGGTTCGCTTCGT GCACGGACACTCGGCGTGGTCTCCGGGGCAGCTTCAGGGAGAGCTGGACC ACAATCAGGTAAATTACAGATCAAAACTACGCAGCGACCAAGAGAATGGT GCGCTGCTTCTAAATTTGCGCGGACCCTCGTCCGAGCGCTGGTGAACGTG ATGTGGGTACATATCAATCCGTAAGAGCAATAAAAACAGTGTCCTTGTGC GTTACTGCTGCGTTTTCGGCGATGCACCTTCCCCGTCTTGTTCTGGCTGG CTGCTGGTGTTCCGTGTAGTTAGCAGCAGTTTGTTTGGTGGAACACTCAC TTCGGAAGATGGGTTTGAACTCGCCCCTTAAGTCTTCGGAGCCGTGCGGC GCTTTTGGGGGACTTTGGTGCGGTCTCTTTGGTTGACAAGCGCGACTGGT GGGACCCGCCGCACCTTTTATTTTCTCGTCTTGTTCTGGCTGGCTGCTGG TACCTACAGCAGTGTAGCAGCAGTTTACCTGTGACGGGACGCGCACCTCG GAGAAGGTCTCTGTTGTAGACACGATTTTGTCGGGGTCGTTTTGAGCTCG CCGAGTCGTTGAAACCGCTTCCGGAGGACTTTTGATGCGGTCTTCTTTGT TTGACGAGCGCGCTTGGTGAAATCGCTCGCTCCTTTCTCGTCTGGTTCTA GCTGGCCGAGACGGCGGTGGTGATGAGTAAATACATATTGTAGCGTGGCA GCAGTTTGCTGGGTGTCTTCCAGACGCGTTGCCGCTGCCGTTGTTTTGTG CCAATATTCCCCCCTCGACCCCTTAAATTCGGCGGTGGTGTCTGCGGAGG CAGTACATTTATCGCATGTAGGCAGGTCGTGTTTTTGGGGTGCTGGGGGT TAGTTTTACTCTGGTGTGTTAACACTAACTAGCTTGTGTCGCTGCCTCTG ATATCTCGCTGTTGGTGTTCGTCACAACAGTGGTTCGTGGCTGCCGCAGC GCCGGAGCTTATTACGGAGCTGTGCGATCAGCCCTTCAACCCGCTCTGGG GCAAGGTGTGTAATCTATGTGGCCATGTTCGTTGTTTTTCTCGTGGTATT TTGAAGCCTTGCGGGAACTGAGTATGTCGTAGCTGCTCTTGTGCTTCCTG TGTCGATTGGGACACAGGCACCCATTCCAGCTTTGACTTGTGCTTGTCTC AGCAGTACGTTGTACTAAATGTAAGTACCGTAGATGACACAAGATACCAC CTCCCCCCCCTGAACAGATTTTCAAAGCTCGATCACTCCGTAACGAAGAG GGTGGGTGCCTGCACCAAACGACACATTTTCGGACAGCCCTCGACTGGAA CCTTTGCAACGCCACCCCTTACTGGCACTGGCACTCTTCTTGCTGGGGAG GAATTGAGCTCTGAAAATATATCCGGGGGGGGGGTCTTGTGTCACCTATG GTAGCTTATTTCTTCGTGCCCAACCAAACCATACCCTTTGTAGATGGCAG CCTTGGGTTTTCCCGCCATATTGGACGGAGCTTATCTTCCTGCATTAACG TATGTAAGCGGTTGTTTGACGACGTCCAGACGACGCTTCGGTTTCTCCCC CCAACAATGGCGTCTTCGGCACCGTGTTTACGTGCTGCGTTTGTTTATCG CGAGCCCGCCGTCTTGGGGCGCGAACCAAGGTGCATACTAGGAGCGGGTT TTCACGATCAAGCTCCGCGCACGCCTCCGACGATTTTTTTTTTTTTTTTT TTTTCCTTTTTTCCCTTTTTTTCTTTTTTCTTTCCGTCACCTGTCCCTGT CCGGTTTCCTTCCCCCCCTTTCGCCCGGCTCCTNNNNNNNNNNCCCCCCC CCCCCGCGCCTCCCCGGGGCGCGTTTTTCCCGGTGCGGGTTCCGCCCCCG CCCCCGCCGTTTTTTTTTTTTTTTTTTTTTCCCATCTCGCCCTTTTTTCC GTTTGTCCTGCCGCCACGTGTCCCTGGCCGGTTTCCTTCACCGCAGTTGC TCCGGCTCATGGGGGGGAAGTATCGGGAGGTCGCCCAGAGGAACGAGCCA CGGATGTGAAGGCTGCGTCTGGAGTCCAGATGACCGGGACCCGAAAAATC GCCGACAAACAACGGAAGATAAAACAAAAACGCGGTAAATGGTACATACA GCAGTATATAAATGGTGGAGTACATACATATCAAGTGAAGCCACCAAGGG TTTTTTTCGCTGCGGCGACGGGGTTAGATCGAGCTCGCCGCCAAAGAGCT AGAGCTCCCAAAGGAGAGTATTATACTAAATTCCTCAGGATTTTATTTCC AAGCAGCGAGGTCCGGGAGGGGAAAAGGGGGGCCCCCCAAACGGGCGCGT CCTGCTGTTACAACCCCCCGGACAAAGGTTGGCCCCGGCCGACGCTAGTT TGACGCGGGGGCTGAGGACAGAGTGGCTTTTGGGGGTGTAGGCGGTCTTG GGTCTTCAGTTTTGCGCGGTTTTGCGCGCCTCTCGCCGTCCGACGGCCCC CGTGTTGGTAATACTTCTCCTGCACTCGGGTCCTCCCGTCCGCACGAGAC TAACCGACAACATGGAGCAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1804:15762..20431-

>mRNA_L-elsbetiae_contig1804.5174.1 ID=mRNA_L-elsbetiae_contig1804.5174.1|Name=mRNA_L-elsbetiae_contig1804.5174.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig1804:15762..20431- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGCTCGGCACGATGACCGTCTTGCACGGCGCCAACGTTGAGGGGAG
CGACCCCATAATGAACGGCGTCTACGCCGGCGGTTTCGAGTCTCTTGTGG
AGGCGACCCGGCAGATGGGGCTCGGCACGATGACCGTCTTGCACGGCGCC
AACGTTGAGGGGAGCGACCCCATAATGAACGGCGTCTACGCCGGCGGTTT
CGAGTCTCTTGTGGAGGCGACCCGGCAGGGGAGGGTGCCGAAGGACCGGG
TTCGCTTCGTGCACGGACACTCGGCGTGGTCTCCGGGGCAGCTTCAGGGA
GAGCTGGACCACAATCAGGGGAGGGTGCCGAAGGACCGGGTTCGCTTCGT
GCACGGACACTCGGCGTGGTCTCCGGGGCAGCTTCAGGGAGAGCTGGACC
ACAATCAGTGGTTCGTGGCTGCCGCAGCGCCGGAGCTTATTACGGAGCTG
TGCGATCAGCCCTTCAACCCGCTCTGGGGCAAGTGGTTCGTGGCTGCCGC
AGCGCCGGAGCTTATTACGGAGCTGTGCGATCAGCCCTTCAACCCGCTCT
GGGGCAAGTTGCTCCGGCTCATGGGGGGGAAGTATCGGGAGGTCGCCCAG
AGGAACGAGCCACGGATGTGATTGCTCCGGCTCATGGGGGGGAAGTATCG
GGAGGTCGCCCAGAGGAACGAGCCACGGATGTGA
back to top