mRNA_L-elsbetiae_contig18031.5171.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18031.5171.1
Unique NamemRNA_L-elsbetiae_contig18031.5171.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18031.5171.1 vs. uniprot
Match: A0A6H5KBA3_9PHAE (CAP-Gly domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBA3_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 7.490e-32
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 1 
Query:    1 NDLRSAIVKEACVLLEKLSSVAGIYMAALMRDVLNVLLQLMANGNSVIVGQVDSCMRHIIAHSRFPRQLKEV 216
            NDLRSAIVKEACVLLEKLS  AG YMAALMRD+LNVLLQL+ANGNSVIVGQVDSCMRHII HSRFPRQLKEV
Sbjct:   78 NDLRSAIVKEACVLLEKLSDAAGNYMAALMRDMLNVLLQLLANGNSVIVGQVDSCMRHIIEHSRFPRQLKEV 149
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BLAST of mRNA_L-elsbetiae_contig18031.5171.1 vs. uniprot
Match: D8LJI4_ECTSI (CAP-Gly domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJI4_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 7.570e-32
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 1 
Query:    1 NDLRSAIVKEACVLLEKLSSVAGIYMAALMRDVLNVLLQLMANGNSVIVGQVDSCMRHIIAHSRFPRQLKEV 216
            NDLRSAIVKEACVLLEKLS  AG YMAALMRD+LNVLLQL+ANGNSVIVGQVDSCMRHII HSRFPRQLKEV
Sbjct:   78 NDLRSAIVKEACVLLEKLSDAAGNYMAALMRDMLNVLLQLLANGNSVIVGQVDSCMRHIIEHSRFPRQLKEV 149
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18031.5171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KBA3_9PHAE7.490e-3291.67CAP-Gly domain-containing protein n=1 Tax=Ectocarp... [more]
D8LJI4_ECTSI7.570e-3291.67CAP-Gly domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18031contigL-elsbetiae_contig18031:530..2057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.1
Seed ortholog evalue3.3e-27
Seed eggNOG ortholog2880.D8LJI4
KEGG koko:K10423,ko:K10758
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule binding
EggNOG OGsCOG5244@1,KOG4568@2759
EC1.8.3.2
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04812
Exons2
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815751.9709034-CDS-L-elsbetiae_contig18031:529..6071622815751.9709034-CDS-L-elsbetiae_contig18031:529..607Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18031 530..607 -
1691683079.6718674-CDS-L-elsbetiae_contig18031:529..6071691683079.6718674-CDS-L-elsbetiae_contig18031:529..607Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18031 530..607 -
1622815751.986-CDS-L-elsbetiae_contig18031:1919..20571622815751.986-CDS-L-elsbetiae_contig18031:1919..2057Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18031 1920..2057 -
1691683079.6843524-CDS-L-elsbetiae_contig18031:1919..20571691683079.6843524-CDS-L-elsbetiae_contig18031:1919..2057Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18031 1920..2057 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18031.5171.1prot_L-elsbetiae_contig18031.5171.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18031 530..2057 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18031.5171.1

>prot_L-elsbetiae_contig18031.5171.1 ID=prot_L-elsbetiae_contig18031.5171.1|Name=mRNA_L-elsbetiae_contig18031.5171.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=72bp
NDLRSAIVKEACVLLEKLSSVAGIYMAALMRDVLNVLLQLMANGNSVIVG
QVDSCMRHIIAHSRFPRQLKEV
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mRNA from alignment at L-elsbetiae_contig18031:530..2057-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18031.5171.1 ID=mRNA_L-elsbetiae_contig18031.5171.1|Name=mRNA_L-elsbetiae_contig18031.5171.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1528bp|location=Sequence derived from alignment at L-elsbetiae_contig18031:530..2057- (Laminarionema elsbetiae ELsaHSoW15)
AACGATCTTCGATCAGCTATCGTCAAGGAGGCGTGCGTGCTCCTGGAAAA
GCTGTCGTCGGTGGCTGGGATCTACATGGCGGCCCTCATGCGCGACGTGC
TCAACGTCCTTCTTCAGCTTATGGCCAACGGTAACTCGGTGAGGAAAATA
TGGAATACGGCAGTCACACTGGGTCGTCTGGCAAGTCGTAGAGGAGGGAA
GAGGGCCGGTGGGGCAGACGACGAATCAGTCAATAATGAGAGGGGGGGGG
GGGGATACACAGATTCATGACATACATATGTAGCGGGAGAATAGAAACGC
CAAGACCTTGTCTGTTTTGGAAGAGAGGGAAGGAGGGAGGGAGACTGCAG
AGTGGTACCAGACGGTGTTCACGGAAAACACATCTACATATTTAAGATGG
ACGCTTTGCGTGCAGAGCATGGCGGGCGGAGAGGTATGTATCGCACGTCG
TTCTAGCTGCACGCGCTGTCCCAACATCTACGTAATAATGTAAGATGGGG
GCTTTGCGTGCAGAGCATCGCGGGCGGATAGGTTATGTATCGCACGTCGT
TCTAGCTGCACGCACTGTCTCATACATGTGTGTCCTTCCCGTTTATTTTG
GCGACAGTCCCCCCAAGTGGAGACGTGTACTACACCTTGCGGTGTACTTA
GAGGTACTACACTTTGCAGTACATTTGTCTGTACAACTAGACTAGAACCA
ACCGGGGCCACACAGGAGGAGGAGGTGAACACTGGGGCTTTTTCTTCTTT
TTTCTTTTCTTTTTTTGCCCACCTTCCTCCTGCGGTTCTTGCCTTGGGTT
TTATCGCGAGAAGGGTTCAGCTGTCCCTTTCCCTCGTCAACGTGATTATG
TCGAAGTTTGGTACTCACGAGCTTTTCAGCTTTAATCGCTTTCACCTGCA
AAGTCGCAAAAGAAACACTTCTGCTTGGGATTGAATACATACTTCGAAGT
ACATACATGCTTTTTTTTTTTTCTTCTTCACATTTATTTCCAGTGCTCGA
TGGGCTCCCCGTGACGAGGACATCTTGCCAGAGTACTGAACCGTGGTGAC
ACAGAAGGGTCCCTTTCCCCAAGGCCCCCACTCCCCCCCCGTCTGCGGTG
CTTGTTTAAGAGTTTTGTACATACATACATACTGCTCGCGATAAAAGCAT
CACAGGCAGGCAGCGCAGGAGGGGGTCAACCCCCCACCCCCTTCTGTTGT
GACCCCGGTTGGGTCGTCTAGCTAGTCGTAGTGGAGGAAGGGGGCCAATG
GGGCAGACGACGAATAAGCCTATAATAGGAGGGGGGGGAAAAAGAAGAAA
AAAACGTTGGGTCCGGTCCCGCCCCCGCCCCGCACCCGCTCCACCCCTTC
GTTTTTGTACTTTTTTGTGTTTGTTTTTTTTTGTCGTGCCTGTGACACAC
CGATTCGTATCATTTTTCGCCATCGTCGTCGTCGTCAACATCAAACACAG
GTGATCGTGGGACAGGTGGACTCGTGCATGCGGCACATCATCGCCCACTC
GCGCTTCCCAAGACAGCTCAAGGAGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18031:530..2057-

>mRNA_L-elsbetiae_contig18031.5171.1 ID=mRNA_L-elsbetiae_contig18031.5171.1|Name=mRNA_L-elsbetiae_contig18031.5171.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=432bp|location=Sequence derived from alignment at L-elsbetiae_contig18031:530..2057- (Laminarionema elsbetiae ELsaHSoW15)
AACGATCTTCGATCAGCTATCGTCAAGGAGGCGTGCGTGCTCCTGGAAAA
GCTGTCGTCGGTGGCTGGGATCTACATGGCGGCCCTCATGCGCGACGTGC
TCAACGTCCTTCTTCAGCTTATGGCCAACGGTAACTCGAACGATCTTCGA
TCAGCTATCGTCAAGGAGGCGTGCGTGCTCCTGGAAAAGCTGTCGTCGGT
GGCTGGGATCTACATGGCGGCCCTCATGCGCGACGTGCTCAACGTCCTTC
TTCAGCTTATGGCCAACGGTAACTCGGTGATCGTGGGACAGGTGGACTCG
TGCATGCGGCACATCATCGCCCACTCGCGCTTCCCAAGACAGCTCAAGGA
GGTGGTGATCGTGGGACAGGTGGACTCGTGCATGCGGCACATCATCGCCC
ACTCGCGCTTCCCAAGACAGCTCAAGGAGGTG
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