mRNA_L-elsbetiae_contig180.5163.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig180.5163.1
Unique NamemRNA_L-elsbetiae_contig180.5163.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig180.5163.1 vs. uniprot
Match: A0A6H5KKU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKU0_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.940e-12
Identity = 47/53 (88.68%), Postives = 47/53 (88.68%), Query Frame = 3 
Query:  105 DDLNRSGXXXSSDDDEVSLNDSDDTGSLIDEDDESTEDHQASRSYSDSNDDNF 263
            DDLNRSGXXX     EVSLNDSDDTGSLIDEDDESTED QASRSYSDSNDDNF
Sbjct:  208 DDLNRSGXXXXXXXXEVSLNDSDDTGSLIDEDDESTED-QASRSYSDSNDDNF 259
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BLAST of mRNA_L-elsbetiae_contig180.5163.1 vs. uniprot
Match: D8LND8_ECTSI (Putative: flagellar associated protein, qilin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LND8_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 9.740e-9
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 3 
Query:  150 EVSLNDSDDTGSLIDEDDESTEDHQASRSYSDSNDDNF 263
            +VSLNDSDDTGSLIDEDDESTED QASRSYSDSNDDNF
Sbjct:  269 QVSLNDSDDTGSLIDEDDESTED-QASRSYSDSNDDNF 305
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig180.5163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKU0_9PHAE3.940e-1288.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LND8_ECTSI9.740e-994.74Putative: flagellar associated protein, qilin-like... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig180contigL-elsbetiae_contig180:44552..46261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size337
Cds size192
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig180.5163.1prot_L-elsbetiae_contig180.5163.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig180 45114..46190 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815750.5200565-UTR-L-elsbetiae_contig180:44551..445831622815750.5200565-UTR-L-elsbetiae_contig180:44551..44583Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig180 44552..44583 +
1691683078.6675806-UTR-L-elsbetiae_contig180:44551..445831691683078.6675806-UTR-L-elsbetiae_contig180:44551..44583Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig180 44552..44583 +
1622815750.5321226-UTR-L-elsbetiae_contig180:45071..451131622815750.5321226-UTR-L-elsbetiae_contig180:45071..45113Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig180 45072..45113 +
1691683078.6761694-UTR-L-elsbetiae_contig180:45071..451131691683078.6761694-UTR-L-elsbetiae_contig180:45071..45113Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig180 45072..45113 +
1622815750.5742989-UTR-L-elsbetiae_contig180:46190..462611622815750.5742989-UTR-L-elsbetiae_contig180:46190..46261Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig180 46191..46261 +
1691683078.7032208-UTR-L-elsbetiae_contig180:46190..462611691683078.7032208-UTR-L-elsbetiae_contig180:46190..46261Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig180 46191..46261 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815750.543958-CDS-L-elsbetiae_contig180:45113..451911622815750.543958-CDS-L-elsbetiae_contig180:45113..45191Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig180 45114..45191 +
1691683078.68424-CDS-L-elsbetiae_contig180:45113..451911691683078.68424-CDS-L-elsbetiae_contig180:45113..45191Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig180 45114..45191 +
1622815750.555944-CDS-L-elsbetiae_contig180:46076..461901622815750.555944-CDS-L-elsbetiae_contig180:46076..46190Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig180 46077..46190 +
1691683078.6921766-CDS-L-elsbetiae_contig180:46076..461901691683078.6921766-CDS-L-elsbetiae_contig180:46076..46190Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig180 46077..46190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig180.5163.1

>prot_L-elsbetiae_contig180.5163.1 ID=prot_L-elsbetiae_contig180.5163.1|Name=mRNA_L-elsbetiae_contig180.5163.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=64bp
MSGSGSGSGSDDLNRSGGGTSSDDDEVSLNDSDDTGSLIDEDDESTEDHQ
ASRSYSDSNDDNF*
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mRNA from alignment at L-elsbetiae_contig180:44552..46261+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig180.5163.1 ID=mRNA_L-elsbetiae_contig180.5163.1|Name=mRNA_L-elsbetiae_contig180.5163.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1710bp|location=Sequence derived from alignment at L-elsbetiae_contig180:44552..46261+ (Laminarionema elsbetiae ELsaHSoW15)
GCACTGCAGGCGCGGGGGGCAGCTCGAACAGAGTAAGTTGATTGCTGTTA
TGTTGTTGTTGCTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGGTAGTGGTGTTGGTGGTGGTGGTGGTGGTGGTGGTGGCGGTGGTGGT
GGCGGTGGGGGGGGGTGGTGCTGAGATCGTGACCAACAACGACTGTGCCC
CCCCCCCCNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGTGTGAGCTCGGGGCAAAAAAACGTTGCCC
CCCCCCCCCCCCCCCCCCCTTTTCCGCCTCTCCTCATCTTTCAATCTCGG
AGCTCTCGATATCATGTGCGGTGTTGAATTAGTGATGACCAGGGCTAGCC
ACAGCAACAGCAACAATCCACCGACCGATCTTCCTCCTCTCGTCCCTCTC
CCTCGCTGCCCTCCTCCCCCCTCCCCAACCCCTCTGTCTGCGCGTTTCCG
GTTCACCCTCGTGCGGCCAGAATCGGCGCCGCGGCAGCGGGTCGGGCGAT
TCCTCCTCGGGAATGTCGGGCAGCGGCAGCGGCAGCGGCAGCGATGACCT
CAACCGGTCGGGAGGCGGCACGAGCAGCGACGACGACGAGGTGTGTGTCG
ACGTGTCTTCGTTTCGTCTGTGTGTGCCGGAAAGTCTCGTGTTTTTTTTT
AATTTTGGTCCGCCGCCGAGGCTATCTATACAACCAGCCAGCCGGTATTT
ACCCATGTTGAATTAATTCAAACCCACGCTGATACCGCAGTGTTTTAGCT
CCCGAGTATGTAGCTCCTCTCGTAAATCCAAAATACACGCGTTTATCGAG
GCTTTTTAGGTTGGTTCGCAATCGTCACCCCTTGAAGCAGAGCCGGTCCC
GACCACTGTCGGCGGCCAGCACGCACGGCGCGGGTGCCTGACTGACGAAA
AGACGCCATGTCGCCGGGAAGAAAACAAAAACATCCTTATTGAGGGAAAA
TAACAGGAATGATTCATTCATATTACTTATTTTTTCATTATACTCTTTTT
AGGGTAAGTTATCCTGTGACCACGGGAACCGACCGCGTCAGTGTTGGATT
ATTAGTGCGCGGACTCATGGGGGTACTGCATAGAGAGATCGGAACGGTTT
TTAATGTGAAGACAACAACAACAACAACAACAACAACAACAACAACAGCT
AGAAAAGGTCTCTGAGAAAGATGGTTTTACCCCTCTCAGGGGGGTGGTTC
CTTACTTTTTTCTCCTTCGATGCATTTCCGGTGTGGGAGGAAGGAAACGG
TTCCTCCTTATTCATCGATCAACACGCAAATACACATACACACATGCCCA
CGCACCCGCTCAATACACCCAAAACCATTTTTTTTTTGTTAGACTATAAG
TTGTCGTTGATGTATACATACATAGCTTGGGATAATATGAGGCCCTCCTG
CCACGGCACGGAACCCCCCCCCCACGGCACGGAGCCCCCCCCCCCGCACT
TCACGTTCCCTTTGTCCGAGAGCAGGTGTCCCTCAACGACTCCGACGACA
CCGGGTCCCTCATAGATGAGGACGACGAGAGCACCGAGGACCACCAGGCG
TCGCGATCGTACAGTGACAGCAACGACGACAACTTCTGACGCGAGACGTG
ATAGGTGACCGACCGCACGAGGAAGAACGTTCGACGGATATTTGGGGCGA
AGCAGGGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig180:44552..46261+

>mRNA_L-elsbetiae_contig180.5163.1 ID=mRNA_L-elsbetiae_contig180.5163.1|Name=mRNA_L-elsbetiae_contig180.5163.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=384bp|location=Sequence derived from alignment at L-elsbetiae_contig180:44552..46261+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGGGCAGCGGCAGCGGCAGCGGCAGCGATGACCTCAACCGGTCGGG
AGGCGGCACGAGCAGCGACGACGACGAGATGTCGGGCAGCGGCAGCGGCA
GCGGCAGCGATGACCTCAACCGGTCGGGAGGCGGCACGAGCAGCGACGAC
GACGAGGTGTCCCTCAACGACTCCGACGACACCGGGTCCCTCATAGATGA
GGACGACGAGAGCACCGAGGACCACCAGGCGTCGCGATCGTACAGTGACA
GCAACGACGACAACTTCTGAGTGTCCCTCAACGACTCCGACGACACCGGG
TCCCTCATAGATGAGGACGACGAGAGCACCGAGGACCACCAGGCGTCGCG
ATCGTACAGTGACAGCAACGACGACAACTTCTGA
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