mRNA_L-elsbetiae_contig17982.5144.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17982.5144.1
Unique NamemRNA_L-elsbetiae_contig17982.5144.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17982.5144.1 vs. uniprot
Match: Q8QNN4_ESV1K (EsV-1-27 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNN4_ESV1K)

HSP 1 Score: 279 bits (714), Expect = 2.040e-91
Identity = 203/252 (80.56%), Postives = 221/252 (87.70%), Query Frame = 1 
Query:    1 TMGATVAIKIAKXXXXXXXXXXXXXXXXXXXXXXXXXXXLVRFVVMTLLRSLSSTVTFVGETAINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFVSVWRLVVTIITAALGETCYLAHKSVGRIFDFISDYMLSLQAFSSGLPGLAKVFKAQATDVKTGVNLKSIISQAISAFVDTVYYLIMGDEKKFSDGFVPNLFTEVFKTIPLSFDLGKLILTGTVDIAKETLGTAFSSLKELTSLSGIMAGCRGTAS 756
            +M  T+A+K+ K     XXXXXXXXXXXXXXXXXXXXX LVRFVVMTLLRSL+STV+F+GET INXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ VSVWRLVVTI+TA LGETCYLA   +GR+FDF SDY+LSLQAFSSGLPGLAKV KAQA DVKTGVNL SIISQAI +FVDT+ Y++ GDE KFSDG VPNLFTEVFK +PLSFDLGKLIL GT DI+KETLG AFSSLKEL SL GI+AGCRG AS
Sbjct:   14 SMAPTLALKMVKKIIVGXXXXXXXXXXXXXXXXXXXXXILVRFVVMTLLRSLASTVSFIGETTINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLVSVWRLVVTILTATLGETCYLATNGIGRVFDFFSDYLLSLQAFSSGLPGLAKVLKAQADDVKTGVNLGSIISQAIQSFVDTLVYILKGDENKFSDGIVPNLFTEVFKLLPLSFDLGKLILQGTFDISKETLGVAFSSLKELASLRGIVAGCRGKAS 265
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BLAST of mRNA_L-elsbetiae_contig17982.5144.1 vs. uniprot
Match: D8LP64_ECTSI (EsV-1-27 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP64_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 7.040e-36
Identity = 100/121 (82.64%), Postives = 106/121 (87.60%), Query Frame = 1 
Query:  136 MTLLRSLSSTVTFVGETAINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFVSVWRLVVTIITAALGETCYLAHKSVGRIFDFISDYMLSLQAFSSGLPGLAKVFKAQATDVKTGVNLKSI 498
            MTLLRSL+STV+FVGET INXXXXXXXXXXXXXXXXXXXXXXXXXXXX Q VSVWRLVV IITA LGETCYLA   + R+FDF SDYMLSLQAF SGLPGLAKV KAQ  DVKTGVN+ +I
Sbjct:    1 MTLLRSLASTVSFVGETTINXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQLVSVWRLVVVIITATLGETCYLATNGIDRVFDFFSDYMLSLQAFRSGLPGLAKVLKAQVDDVKTGVNVTNI 121
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17982.5144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNN4_ESV1K2.040e-9180.56EsV-1-27 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LP64_ECTSI7.040e-3682.64EsV-1-27 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17982contigL-elsbetiae_contig17982:397..1155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size759
Cds size756
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815749.075865-CDS-L-elsbetiae_contig17982:396..11521622815749.075865-CDS-L-elsbetiae_contig17982:396..1152Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17982 397..1152 -
1691683077.7004287-CDS-L-elsbetiae_contig17982:396..11521691683077.7004287-CDS-L-elsbetiae_contig17982:396..1152Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17982 397..1152 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815749.0864284-UTR-L-elsbetiae_contig17982:1152..11551622815749.0864284-UTR-L-elsbetiae_contig17982:1152..1155Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17982 1153..1155 -
1691683077.7129977-UTR-L-elsbetiae_contig17982:1152..11551691683077.7129977-UTR-L-elsbetiae_contig17982:1152..1155Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17982 1153..1155 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17982.5144.1prot_L-elsbetiae_contig17982.5144.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17982 397..1152 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17982.5144.1

>prot_L-elsbetiae_contig17982.5144.1 ID=prot_L-elsbetiae_contig17982.5144.1|Name=mRNA_L-elsbetiae_contig17982.5144.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=252bp
MGATVAIKIAKKIVIGIVCGVSSIVVSTVTNAVLAAVILVRFVVMTLLRS
LSSTVTFVGETAINTLSFVRDTVFSILTFVVQTVTSIVLFVLNQFVSVWR
LVVTIITAALGETCYLAHKSVGRIFDFISDYMLSLQAFSSGLPGLAKVFK
AQATDVKTGVNLKSIISQAISAFVDTVYYLIMGDEKKFSDGFVPNLFTEV
FKTIPLSFDLGKLILTGTVDIAKETLGTAFSSLKELTSLSGIMAGCRGTA
S*
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mRNA from alignment at L-elsbetiae_contig17982:397..1155-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17982.5144.1 ID=mRNA_L-elsbetiae_contig17982.5144.1|Name=mRNA_L-elsbetiae_contig17982.5144.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=759bp|location=Sequence derived from alignment at L-elsbetiae_contig17982:397..1155- (Laminarionema elsbetiae ELsaHSoW15)
ACGATGGGTGCAACGGTTGCAATCAAGATTGCGAAGAAAATTGTTATCGG
CATTGTTTGTGGCGTCTCGTCCATCGTCGTATCTACGGTGACGAATGCAG
TCCTCGCGGCAGTGATTCTCGTACGATTCGTAGTGATGACCTTGTTGCGA
TCACTGAGTTCCACGGTGACGTTCGTTGGCGAGACCGCCATCAACACGCT
TTCTTTTGTGAGAGATACCGTGTTCTCCATTCTCACGTTCGTCGTTCAGA
CCGTGACAAGCATAGTGCTGTTTGTTCTCAATCAGTTTGTATCGGTGTGG
AGACTTGTGGTAACCATAATTACCGCGGCCCTTGGAGAGACGTGCTACCT
CGCACATAAATCTGTAGGTAGGATATTTGACTTCATATCGGATTACATGC
TGTCTCTACAGGCTTTCTCATCGGGTCTACCCGGCCTGGCCAAGGTTTTT
AAAGCACAGGCTACCGATGTCAAAACGGGAGTTAATTTGAAATCTATTAT
CAGTCAAGCGATTTCAGCGTTCGTAGATACAGTATACTACCTAATCATGG
GCGATGAGAAAAAGTTTAGCGACGGTTTCGTACCCAACCTGTTCACCGAA
GTGTTTAAGACTATTCCTTTGTCTTTTGATCTGGGAAAACTCATCCTGAC
AGGCACCGTGGATATAGCGAAGGAAACCCTAGGCACCGCCTTTTCTTCTT
TGAAAGAGTTGACGTCTCTAAGCGGGATCATGGCTGGATGTCGTGGCACG
GCGTCGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17982:397..1155-

>mRNA_L-elsbetiae_contig17982.5144.1 ID=mRNA_L-elsbetiae_contig17982.5144.1|Name=mRNA_L-elsbetiae_contig17982.5144.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1512bp|location=Sequence derived from alignment at L-elsbetiae_contig17982:397..1155- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTGCAACGGTTGCAATCAAGATTGCGAAGAAAATTGTTATCGGCAT
TGTTTGTGGCGTCTCGTCCATCGTCGTATCTACGGTGACGAATGCAGTCC
TCGCGGCAGTGATTCTCGTACGATTCGTAGTGATGACCTTGTTGCGATCA
CTGAGTTCCACGGTGACGTTCGTTGGCGAGACCGCCATCAACACGCTTTC
TTTTGTGAGAGATACCGTGTTCTCCATTCTCACGTTCGTCGTTCAGACCG
TGACAAGCATAGTGCTGTTTGTTCTCAATCAGTTTGTATCGGTGTGGAGA
CTTGTGGTAACCATAATTACCGCGGCCCTTGGAGAGACGTGCTACCTCGC
ACATAAATCTGTAGGTAGGATATTTGACTTCATATCGGATTACATGCTGT
CTCTACAGGCTTTCTCATCGGGTCTACCCGGCCTGGCCAAGGTTTTTAAA
GCACAGGCTACCGATGTCAAAACGGGAGTTAATTTGAAATCTATTATCAG
TCAAGCGATTTCAGCGTTCGTAGATACAGTATACTACCTAATCATGGGCG
ATGAGAAAAAGTTTAGCGACGGTTTCGTACCCAACCTGTTCACCGAAGTG
TTTAAGACTATTCCTTTGTCTTTTGATCTGGGAAAACTCATCCTGACAGG
CACCGTGGATATAGCGAAGGAAACCCTAGGCACCGCCTTTTCTTCTTTGA
AAGAGTTGACGTCTCTAAGCGGGATCATGGCTGGATGTCGTGGCACGGCG
TCGTAAATGGGTGCAACGGTTGCAATCAAGATTGCGAAGAAAATTGTTAT
CGGCATTGTTTGTGGCGTCTCGTCCATCGTCGTATCTACGGTGACGAATG
CAGTCCTCGCGGCAGTGATTCTCGTACGATTCGTAGTGATGACCTTGTTG
CGATCACTGAGTTCCACGGTGACGTTCGTTGGCGAGACCGCCATCAACAC
GCTTTCTTTTGTGAGAGATACCGTGTTCTCCATTCTCACGTTCGTCGTTC
AGACCGTGACAAGCATAGTGCTGTTTGTTCTCAATCAGTTTGTATCGGTG
TGGAGACTTGTGGTAACCATAATTACCGCGGCCCTTGGAGAGACGTGCTA
CCTCGCACATAAATCTGTAGGTAGGATATTTGACTTCATATCGGATTACA
TGCTGTCTCTACAGGCTTTCTCATCGGGTCTACCCGGCCTGGCCAAGGTT
TTTAAAGCACAGGCTACCGATGTCAAAACGGGAGTTAATTTGAAATCTAT
TATCAGTCAAGCGATTTCAGCGTTCGTAGATACAGTATACTACCTAATCA
TGGGCGATGAGAAAAAGTTTAGCGACGGTTTCGTACCCAACCTGTTCACC
GAAGTGTTTAAGACTATTCCTTTGTCTTTTGATCTGGGAAAACTCATCCT
GACAGGCACCGTGGATATAGCGAAGGAAACCCTAGGCACCGCCTTTTCTT
CTTTGAAAGAGTTGACGTCTCTAAGCGGGATCATGGCTGGATGTCGTGGC
ACGGCGTCGTAA
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