prot_L-elsbetiae_contig17982.5144.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig17982.5144.1
Unique Nameprot_L-elsbetiae_contig17982.5144.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length252
Homology
BLAST of mRNA_L-elsbetiae_contig17982.5144.1 vs. uniprot
Match: Q8QNN4_ESV1K (EsV-1-27 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNN4_ESV1K)

HSP 1 Score: 281 bits (719), Expect = 3.430e-92
Identity = 204/251 (81.27%), Postives = 221/251 (88.05%), Query Frame = 0
Query:    1 MGATVAIKIAKKXXXXXXXXXXXXXXXXXXXXXXXXXXLVRFVVMTLLRSLSSTVTFVGETAINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFVSVWRLVVTIITAALGETCYLAHKSVGRIFDFISDYMLSLQAFSSGLPGLAKVFKAQATDVKTGVNLKSIISQAISAFVDTVYYLIMGDEKKFSDGFVPNLFTEVFKTIPLSFDLGKLILTGTVDIAKETLGTAFSSLKELTSLSGIMAGCRGTAS 251
            M  T+A+K+ KK    XXXXXXXXXXXXXXXXXXXXX LVRFVVMTLLRSL+STV+F+GET INXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ VSVWRLVVTI+TA LGETCYLA   +GR+FDF SDY+LSLQAFSSGLPGLAKV KAQA DVKTGVNL SIISQAI +FVDT+ Y++ GDE KFSDG VPNLFTEVFK +PLSFDLGKLIL GT DI+KETLG AFSSLKEL SL GI+AGCRG AS
Sbjct:   15 MAPTLALKMVKKIIVGXXXXXXXXXXXXXXXXXXXXXILVRFVVMTLLRSLASTVSFIGETTINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLVSVWRLVVTILTATLGETCYLATNGIGRVFDFFSDYLLSLQAFSSGLPGLAKVLKAQADDVKTGVNLGSIISQAIQSFVDTLVYILKGDENKFSDGIVPNLFTEVFKLLPLSFDLGKLILQGTFDISKETLGVAFSSLKELASLRGIVAGCRGKAS 265          
BLAST of mRNA_L-elsbetiae_contig17982.5144.1 vs. uniprot
Match: D8LP64_ECTSI (EsV-1-27 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP64_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 6.840e-36
Identity = 100/121 (82.64%), Postives = 106/121 (87.60%), Query Frame = 0
Query:   45 MTLLRSLSSTVTFVGETAINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFVSVWRLVVTIITAALGETCYLAHKSVGRIFDFISDYMLSLQAFSSGLPGLAKVFKAQATDVKTGVNLKSI 165
            MTLLRSL+STV+FVGET INXXXXXXXXXXXXXXXXXXXXXXXXXXXX Q VSVWRLVV IITA LGETCYLA   + R+FDF SDYMLSLQAF SGLPGLAKV KAQ  DVKTGVN+ +I
Sbjct:    1 MTLLRSLASTVSFVGETTINXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQLVSVWRLVVVIITATLGETCYLATNGIDRVFDFFSDYMLSLQAFRSGLPGLAKVLKAQVDDVKTGVNVTNI 121          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17982.5144.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNN4_ESV1K3.430e-9281.27EsV-1-27 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LP64_ECTSI6.840e-3682.64EsV-1-27 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 98..117
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 52..71
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..8
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..31
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 118..251
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 72..92
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 93..97
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 32..51
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 9..26
NoneNo IPR availableTMHMMTMhelixcoord: 74..96
NoneNo IPR availableTMHMMTMhelixcoord: 13..44

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17982contigL-elsbetiae_contig17982:397..1152 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17982.5144.1mRNA_L-elsbetiae_contig17982.5144.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig17982 397..1155 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig17982.5144.1 ID=prot_L-elsbetiae_contig17982.5144.1|Name=mRNA_L-elsbetiae_contig17982.5144.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=252bp
MGATVAIKIAKKIVIGIVCGVSSIVVSTVTNAVLAAVILVRFVVMTLLRS
LSSTVTFVGETAINTLSFVRDTVFSILTFVVQTVTSIVLFVLNQFVSVWR
LVVTIITAALGETCYLAHKSVGRIFDFISDYMLSLQAFSSGLPGLAKVFK
AQATDVKTGVNLKSIISQAISAFVDTVYYLIMGDEKKFSDGFVPNLFTEV
FKTIPLSFDLGKLILTGTVDIAKETLGTAFSSLKELTSLSGIMAGCRGTA
S*
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