mRNA_L-elsbetiae_contig17974.5140.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17974.5140.1
Unique NamemRNA_L-elsbetiae_contig17974.5140.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig17974.5140.1 vs. uniprot
Match: A0A6H5JXC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC7_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 6.260e-10
Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:  160 TYKTFRNQACFDAARALNVRGAGVQVRRNKCFEKACHALWPGSDAIGESIAAGFS 324
            T K  RN+AC+DA  ALN RG GVQ+RR KCF  AC A+WP    +  ++    S
Sbjct:  124 TTKRMRNKACYDAGTALNARGRGVQLRRQKCFTHACRAVWPDDQPLPAAVLDALS 178
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17974.5140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JXC7_9PHAE6.260e-1049.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17974contigL-elsbetiae_contig17974:966..2548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size349
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815748.6671178-CDS-L-elsbetiae_contig17974:966..11311622815748.6671178-CDS-L-elsbetiae_contig17974:966..1131Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17974 967..1131 -
1691683077.4111369-CDS-L-elsbetiae_contig17974:966..11311691683077.4111369-CDS-L-elsbetiae_contig17974:966..1131Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17974 967..1131 -
1622815748.6800227-CDS-L-elsbetiae_contig17974:2365..25481622815748.6800227-CDS-L-elsbetiae_contig17974:2365..2548Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17974 2366..2548 -
1691683077.422969-CDS-L-elsbetiae_contig17974:2365..25481691683077.422969-CDS-L-elsbetiae_contig17974:2365..2548Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17974 2366..2548 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17974.5140.1prot_L-elsbetiae_contig17974.5140.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17974 967..2548 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17974.5140.1

>prot_L-elsbetiae_contig17974.5140.1 ID=prot_L-elsbetiae_contig17974.5140.1|Name=mRNA_L-elsbetiae_contig17974.5140.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
VCHTHTHSSSPTTQESMADDSYPLQIETAEQKSDNSSTAVHVQLTAERRQ
QLATYKTFRNQACFDAARALNVRGAGVQVRRNKCFEKACHALWPGSDAIG
ESIAAGFSADNVVPYV
back to top

mRNA from alignment at L-elsbetiae_contig17974:966..2548-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17974.5140.1 ID=mRNA_L-elsbetiae_contig17974.5140.1|Name=mRNA_L-elsbetiae_contig17974.5140.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1583bp|location=Sequence derived from alignment at L-elsbetiae_contig17974:966..2548- (Laminarionema elsbetiae ELsaHSoW15)
GTGTGTCACACACACACACACAGCAGCAGCCCTACCACACAAGAGAGCAT
GGCGGACGACTCGTACCCCCTCCAAATTGAGACGGCGGAACAGAAGAGCG
ACAACAGCAGTACAGCTGTCCACGTCCAGCTCACTGCTGAGCGCCGTCAG
CAGCTAGCCACCTACAAGACTTTCAGGAACCAGGTGAGATTAGCGGGGAT
GGGGTGGGTGAACGATGGCCATCGGTGGGCAGCGGGTAGCAGGCTCATGT
TGGCATGCTGTGTGCCTGCAACATGCAGCCCGTGTCTAAATTATGTATCT
AATCGAGCTACCGAACCTCGCCTCTGCGCCTTCTTTTATCTGTCCCCACA
AGTTGCCCCATGTACACAATTTCTTGCCTAAAGCTCGAGTTACGAGAAGC
TGCGTAAAGTGTGGTGCGCCCTCACACGGCGCTCATTGATTACTGCCGCG
TCGATCGTGGTGCTTGTTTATTTGGGTAAGGAAGCCTTGTCTGGTGGGAA
ATTTGAAATCTTAATCGTGCACAGCGTGCTAAATAAAGTAAGTGTGTAGA
TAATTCTAAGACACTGCACCACACCCCCTGAACGGATTTTGAATGGTCTT
TTCCTCCCTAGCAAGAAGAGTGCTGGTGCCAAAAGGTCGTGGCGTTGAAA
ATATGTAGTCCAACGCTGTCCGAAAATATGCTGTTTGATGTTGTCACGCT
CTTCGTTACGGAGTAATGGGGCTCTAAAACTCGGTCCACGGGGGGTATGG
TATCTTGTGTCACCTACGGCGGAGCCTCTAAAAATGTCTGTTCGGAGGTG
CGGTGTTGTGTATGTATGTACAAGTTGTTGGTCGTACGTAGTAGGATCTG
CTGCTGTATTCAATTTGAAATTTGCGGTATATTTCAGCAACACGATGCGC
ACTGCGCTTCTTGTCGCCGACACGCAGTACTGCTGTAAATCGTCCCGGGG
AGTTATCAAAGGTAGAGGCGATCTGTTTTTGAAAGAAAAAAGAACACCCC
AGGCGTGGTTTATCTACCTGCAAAAATGCTTGACCACACGAACAACAGAA
AAGTGCGTGCACGGGCGCCCCCGAAAAAATATCGCCCCTGGGCTTTGTCG
ATGGTGGCGAAAAAAAATATATATATATGCAGGTATGTATGAAGTATGTT
ATTGGCCCCGCCCCGGCTTTCAAAGTTTTTAATGAATGCATACAAATGTC
AGCAAAGTGCCAAAATAGCGATGTATAGTTTTTTTTTCGGGAGGGGGGGG
GGGGCGTTCTCTTTGCCCGGGGTGTTCTCAAGAGATACTACAGGTAAATT
TAGATCGATTACAATAATAATATAGATCAGCGCTCCAAGACGGCTGGACT
GCAGAAAAACTAGACTTCCAGACTTTCCCTCGTGAATCCACGTAGTATAT
ATGACACTTTTTCGCAGGCCTGCTTCGACGCCGCGCGCGCTCTAAACGTT
CGAGGTGCGGGGGTGCAAGTCCGCCGCAATAAGTGCTTCGAGAAGGCTTG
CCACGCGCTTTGGCCCGGGAGTGACGCGATCGGCGAGTCCATCGCGGCTG
GCTTCTCTGCTGACAACGTGGTGCCATACGTGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig17974:966..2548-

>mRNA_L-elsbetiae_contig17974.5140.1 ID=mRNA_L-elsbetiae_contig17974.5140.1|Name=mRNA_L-elsbetiae_contig17974.5140.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig17974:966..2548- (Laminarionema elsbetiae ELsaHSoW15)
GTGTGTCACACACACACACACAGCAGCAGCCCTACCACACAAGAGAGCAT
GGCGGACGACTCGTACCCCCTCCAAATTGAGACGGCGGAACAGAAGAGCG
ACAACAGCAGTACAGCTGTCCACGTCCAGCTCACTGCTGAGCGCCGTCAG
CAGCTAGCCACCTACAAGACTTTCAGGAACCAGGTGTGTCACACACACAC
ACACAGCAGCAGCCCTACCACACAAGAGAGCATGGCGGACGACTCGTACC
CCCTCCAAATTGAGACGGCGGAACAGAAGAGCGACAACAGCAGTACAGCT
GTCCACGTCCAGCTCACTGCTGAGCGCCGTCAGCAGCTAGCCACCTACAA
GACTTTCAGGAACCAGGCCTGCTTCGACGCCGCGCGCGCTCTAAACGTTC
GAGGTGCGGGGGTGCAAGTCCGCCGCAATAAGTGCTTCGAGAAGGCTTGC
CACGCGCTTTGGCCCGGGAGTGACGCGATCGGCGAGTCCATCGCGGCTGG
CTTCTCTGCTGACAACGTGGTGCCATACGTGGCCTGCTTCGACGCCGCGC
GCGCTCTAAACGTTCGAGGTGCGGGGGTGCAAGTCCGCCGCAATAAGTGC
TTCGAGAAGGCTTGCCACGCGCTTTGGCCCGGGAGTGACGCGATCGGCGA
GTCCATCGCGGCTGGCTTCTCTGCTGACAACGTGGTGCCATACGTG
back to top