mRNA_L-elsbetiae_contig17923.5123.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17923.5123.1
Unique NamemRNA_L-elsbetiae_contig17923.5123.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17923.5123.1 vs. uniprot
Match: D8LGY8_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY8_ECTSI)

HSP 1 Score: 288 bits (736), Expect = 6.880e-85
Identity = 234/324 (72.22%), Postives = 251/324 (77.47%), Query Frame = 1 
Query:   22 SLVVDHLASNGLLQSLAVFLPESGLG------------TDAGASVAA-AALSREDVLQALSLPADSALFRRVISRAAE-EG--------ADGRAA--PGAGAGATVVLTASAAVLPAEXXXXXXXXXXXXXXXXXXXXXXXXXKRVCGLLEALVGEVAARSRAVAVDCNTQTEEAGRSHKENLVSRLEAVRETWLKRSADERREPAQDVTERMLAYQRECESRAATQAKL---------AERETFRERDLAALRLQMTSAQRREVDATRKELQSQYDARVERLRESEREXXXXXXXXXXXXXVXXXXXXQSLLREMDLLRTREQ 894
            SLVVDHLASNGLLQSLAVFLPESGLG            T  GA+ AA AALSREDVLQAL +PADS LFRRVI RA E EG        +DG  A  PGA AGA   + ++A+V     XXXXXXXXXXXXXXXXXXXX    KRVCGLLEALVGEVA RSRAVAVD NTQT+EAGRSHKENLV+RLEAVRETWL+RSADERREPAQDVTERMLAYQRECESRAA QA           AER++FRERDLAALR+QM S +RREVDA RKELQSQYDARVERL+E+ER+  XXXXXXXXXXX XXXXXX      MDLLRTREQ
Sbjct:  120 SLVVDHLASNGLLQSLAVFLPESGLGGGSNCGNTATVGTGPGAAPAAEAALSREDVLQALPIPADSNLFRRVIRRAEEGEGKAAGSVCRSDGETAAVPGAAAGADTAVVSNASVA---VXXXXXXXXXXXXXXXXXXXXSREQKRVCGLLEALVGEVATRSRAVAVDSNTQTDEAGRSHKENLVTRLEAVRETWLRRSADERREPAQDVTERMLAYQRECESRAAAQASCWVAPRLLIKAERDSFRERDLAALRVQMASTRRREVDAMRKELQSQYDARVERLQETERDREXXXXXXXXXXXXXXXXXXXXXXXXMDLLRTREQ 440
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BLAST of mRNA_L-elsbetiae_contig17923.5123.1 vs. uniprot
Match: A0A6H5KME2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KME2_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 5.230e-37
Identity = 109/237 (45.99%), Postives = 133/237 (56.12%), Query Frame = -1 
Query:    7 CLSCCPRLALPLVGKHPLRHVLGRLPPLVRRPLQPCLPNRFQTRHQILLVAASSLLRLRVAVDRDRARPGRHFAHQRLQQAADTLXXXXXXXXXXXXXXXXXXXXXPSSCFCGQHRRRRGQDHS--SASPRPR-----------RSPAIRPLLRRPADHAPEQRRVRRQRQRLQHVLSG*RRGSDRGASVGA---------------EARLRQENREGLQQAVAGEVVHHQADKTRD 633
            CL CCPRLALPLVG+H LRH+L R+ P VR   QP L +RFQT   ILLVAA  L+RL V V+ D ARPG H A + L+QAADT+                     P+SC   +HRRRR + H   S S RPR           R+  +   L RP DHA E+  + R RQRLQHV S  RR S R  +  +               EARLRQE+ + LQQAVAGE+VHH+AD+ R+
Sbjct:   63 CLRCCPRLALPLVGQHALRHILRRVAPFVRGAPQPRLSHRFQT---ILLVAAPRLVRLCVGVNHDSARPGGHLADKCLEQAADTVSLTRTPPAADSGCCSSVT---PASC--SRHRRRRVRHHGRISTSHRPRHRRCFSVAAARRARVVALALFRPPDHASEEGGIDRYRQRLQHVFSRERRLSRRSGTRASADGSRDAAXXXXXXXEARLRQEDCQRLQQAVAGEMVHHKADEFRE 291
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BLAST of mRNA_L-elsbetiae_contig17923.5123.1 vs. uniprot
Match: A0A7S1U379_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U379_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.370e-7
Identity = 49/145 (33.79%), Postives = 73/145 (50.34%), Query Frame = 1 
Query:  457 TQTEEAGRSHKENLVSRLEAVRETWLKRSADERREPAQDVTERMLAYQRECESRAATQAKLAERETFRERDLAALRLQMTSAQRREVDATRKELQSQYDARVERLRESEREXXXXXXXXXXXXXVXXXXXXQSLLREMDLLRTRE 891
            TQTE    + ++ L ++LE +   +   SA    E  Q + +RM  +QRE   RAA   + AE++ F E +L+  RL+    QRREVD  R+ELQ+ YD R++ L   + E                    Q+LL E++ LR RE
Sbjct:   64 TQTETTAWNARDALTAQLEHLEARFASTSARLLSEDGQGIEQRMATFQREVVERAARDLE-AEKQRFVETELSRARLEFQQLQRREVDTLRRELQADYDRRLQELHARDAERALRAEASARNIEASQHDARQNLLFEIERLRNRE 207
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17923.5123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LGY8_ECTSI6.880e-8572.22LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KME2_9PHAE5.230e-3745.99Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S1U379_9STRA2.370e-733.79Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17923contigL-elsbetiae_contig17923:56..2766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size894
Cds size894
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17923.5123.1prot_L-elsbetiae_contig17923.5123.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17923 56..2766 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815747.2746978-CDS-L-elsbetiae_contig17923:55..5541622815747.2746978-CDS-L-elsbetiae_contig17923:55..554Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17923 56..554 +
1691683076.4744654-CDS-L-elsbetiae_contig17923:55..5541691683076.4744654-CDS-L-elsbetiae_contig17923:55..554Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17923 56..554 +
1622815747.28804-CDS-L-elsbetiae_contig17923:1744..18841622815747.28804-CDS-L-elsbetiae_contig17923:1744..1884Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17923 1745..1884 +
1691683076.485861-CDS-L-elsbetiae_contig17923:1744..18841691683076.485861-CDS-L-elsbetiae_contig17923:1744..1884Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17923 1745..1884 +
1622815747.2984235-CDS-L-elsbetiae_contig17923:2511..27661622815747.2984235-CDS-L-elsbetiae_contig17923:2511..2766Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17923 2512..2766 +
1691683076.5035553-CDS-L-elsbetiae_contig17923:2511..27661691683076.5035553-CDS-L-elsbetiae_contig17923:2511..2766Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17923 2512..2766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17923.5123.1

>prot_L-elsbetiae_contig17923.5123.1 ID=prot_L-elsbetiae_contig17923.5123.1|Name=mRNA_L-elsbetiae_contig17923.5123.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=298bp
MNVACFVSLVVDHLASNGLLQSLAVFLPESGLGTDAGASVAAAALSREDV
LQALSLPADSALFRRVISRAAEEGADGRAAPGAGAGATVVLTASAAVLPA
EAGGGGGGGAATAAGGSSQQQQQQQQKRVCGLLEALVGEVAARSRAVAVD
CNTQTEEAGRSHKENLVSRLEAVRETWLKRSADERREPAQDVTERMLAYQ
RECESRAATQAKLAERETFRERDLAALRLQMTSAQRREVDATRKELQSQY
DARVERLRESERERERRDKERLRDAEVSQFEARQSLLREMDLLRTREQ
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mRNA from alignment at L-elsbetiae_contig17923:56..2766+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17923.5123.1 ID=mRNA_L-elsbetiae_contig17923.5123.1|Name=mRNA_L-elsbetiae_contig17923.5123.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2711bp|location=Sequence derived from alignment at L-elsbetiae_contig17923:56..2766+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACGTCGCGTGTTTTGTCAGCCTGGTGGTGGACCACCTCGCCAGCAA
CGGCCTGCTGCAGTCCCTCGCGGTTTTCCTGCCGGAGTCTGGCCTCGGCA
CCGACGCTGGCGCCTCTGTCGCTGCCGCGGCGCTATCCCGAGAGGACGTG
CTGCAGGCGCTGTCGCTGCCGGCGGACTCGGCGCTGTTCCGGCGCGTGAT
CAGCCGGGCGGCGGAGGAGGGGGCGGATGGCCGGGCTGCGCCGGGGGCGG
GGGCTGGCGCTACTGTGGTCTTGACCGCGTCGGCGGCGGTGCTGCCCGCA
GAAGCAGGAGGAGGGGGAGGAGGGGGAGCGGCGACGGCGGCAGGCGGCAG
CTCGCAGCAGCAGCAGCAGCAGCAGCAGAAGCGTGTCTGCGGCCTGCTGG
AGGCGCTGGTGGGCGAAGTGGCGGCCAGGTCTCGCGCGGTCGCGGTCGAC
TGCAACACGCAGACGGAGGAGGCTGGACGCAGCCACAAGGAGAATTTGGG
TGAGGGGGCAGCTGGGTGGGTGAGATGGTCACGAAACTGTCTCTTCTTCG
CGTCTTGTATCGGCTTTCGTGGTATTGTAGGGGTGCTGGGAGGAAGGAAA
ACACCTCTGAGCTTCCTCTCGAACCCCCAATACCTTCCCGGGCAAGCGCC
TCCCTCCATTTGTCGTGCCGACCAGGGGTTCGTTGCGGCTCCGACTCTGC
GGTTGTGTTCTCGCTCTCAGCTGCAGATCACTTAATGTAAGTATGGCATA
CGGTATACCCAGATACAGGGTTCGCGACCCAGCTACTGCTGTTCATGTGC
CGCCAAAAATACCCATTTTCAACGATATTTTTCGCCCCCCCCTGGATCTT
ATCTCATGGTATTTCGCCGGAGCCCCAGTGCACGCACAAGCCTATGTAGC
CACCTTATGTAGACCGGTTTTTGGGAGCACAAAGTTTATTTTGAGAAAAG
TTGCCATTTTCGTATTGTTGGGCACTTTCATCGCCAAGAGCTCAGAATCG
TGCCTGCGCGCACCTCGAGAACAATTGAAGCTCTCGTCCAGAGGTTTCTA
GATCTACTGCCCATTCTGGTAGACTTCACGTTTGATTTTTCGTCGAGGAG
CAAGATATGGCAACACTGTGCCAACGTTGCAACAAAAAATAGCCCTTTCG
TGAAAAAAATTGCAAACTTTTCGCCCGAAAATGCTTTTCTGGCGAAAACC
TGTCAAAATGTTGCCTCTCTTGCTCCTCGACGAAAAATCAAACTTGAAGC
CTGCCAGAATGGGCAGTAGACCTAGAAACCTCTGGACGAGAGCTTCAACT
GTTCTCGAGGTACGCAGGCACGATTCCGAGCTCTTGGCGACGAAAAGTGC
CCAACAATACGAAAAAAGCAACTTTTCTCAATATAAACTTTGTGCTCCCA
TAAAAACCGGTGTTATAAGTCTATCGTTTTTTTTTATGCCGCGAGGGTGG
GTCAAAGTAGGCAGGCGGTCGACCGTGCTCAGCCATCAACCTGCACCTCA
TTCTGTGTGACCACGGCGGTTCCGCACTCTGGCAAGATGCCCTCGTGGCA
CAGCAGGGAGCCCATCGAGCACTGGAAATAAATGTGAAGAAAGAAAGAAA
CCGAAAAAGAAGAAAAAAATCGAGCCCCGTTTGTTGCCCCCCCCCTCCCC
TCCTCCTCCCCTTTGTTGCCCCTCGGATGCTCGCTTCAGTGTCTCGTCTG
GAAGCGGTTCGGGAGACATGGCTGAAGCGGTCTGCGGACGAGCGGCGGGA
GCCGGCCCAGGACGTGACGGAGCGGATGCTTGCCTACCAGCGGGAGTGCG
AGTCGCGGGCAGCAACTCAGGCAAAGCTTGTTTTTTAATGTTTTAATACT
CCTGTCTACTACTTCCGAAGTAATCGTGCGTACATACAGATGCAAGTAGT
GCTTGTATTTTCGACGAAATGAAACGTCAGCGGCCTGTTTTATTGCACAC
ACGTTCGCCCTGTGGAAAGTTGCTGGCGTTGCACGCTTATTTTGTTGTTT
GTGTGTTTGTGTGTGTGCGTGTGTGTGCGTGTGTGTGCGTGTGTTGTTGT
TCGTGTGTTTGTATGTGTGTGTGTGTGTGTTTGTGTGTGTGTTTGTTTGT
TTGTTTGTTTGTTTGTGTGTGTGTGTGTGGTGAGACGAAACGCGTTCGAA
GATGAAACGGATGGCTCTGTTTCTCATCCGTAAATGTCGCGACCGAGAGG
GAGGGCGGCTCATTCGTCCAGGCCCCAGGAAGACCGAAAACCGGCATCAT
TTTTTTTTTTTGCAAAGACGGGGCGGTGGTGGTGGTTCCGATGTTTTATG
TACCGCTGCCGCAGCAACAGCAGTGCTAGCTAACAAACACGGCGAGCTTA
AGTGATTTCACGTGCACTTGCTGGCTGTTTTCCCGCCCCTTTCTCCCACT
CTGCCCGCCCCATCCACCCACCCACCGCGGGCCCCCTGGGGGCCCCGCAG
GTGAAGGCGGAACGGGAGACCTTCCGGGAGCGCGACCTCGCCGCGCTTCG
GCTGCAGATGACCTCGGCGCAGCGGCGAGAGGTGGACGCCACGAGGAAGG
AGCTGCAGTCGCAGTACGACGCGCGCGTGGAGAGGCTGCGGGAGTCGGAG
AGGGAGAGGGAGAGGCGTGACAAGGAACGCCTCCGGGATGCCGAGGTGTC
TCAGTTCGAGGCCAGGCAGAGCCTGCTCAGGGAGATGGACCTCCTCAGGA
CGCGCGAGCAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17923:56..2766+

>mRNA_L-elsbetiae_contig17923.5123.1 ID=mRNA_L-elsbetiae_contig17923.5123.1|Name=mRNA_L-elsbetiae_contig17923.5123.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1788bp|location=Sequence derived from alignment at L-elsbetiae_contig17923:56..2766+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACGTCGCGTGTTTTGTCAGCCTGGTGGTGGACCACCTCGCCAGCAA
CGGCCTGCTGCAGTCCCTCGCGGTTTTCCTGCCGGAGTCTGGCCTCGGCA
CCGACGCTGGCGCCTCTGTCGCTGCCGCGGCGCTATCCCGAGAGGACGTG
CTGCAGGCGCTGTCGCTGCCGGCGGACTCGGCGCTGTTCCGGCGCGTGAT
CAGCCGGGCGGCGGAGGAGGGGGCGGATGGCCGGGCTGCGCCGGGGGCGG
GGGCTGGCGCTACTGTGGTCTTGACCGCGTCGGCGGCGGTGCTGCCCGCA
GAAGCAGGAGGAGGGGGAGGAGGGGGAGCGGCGACGGCGGCAGGCGGCAG
CTCGCAGCAGCAGCAGCAGCAGCAGCAGAAGCGTGTCTGCGGCCTGCTGG
AGGCGCTGGTGGGCGAAGTGGCGGCCAGGTCTCGCGCGGTCGCGGTCGAC
TGCAACACGCAGACGGAGGAGGCTGGACGCAGCCACAAGGAGAATTTGGA
TGAACGTCGCGTGTTTTGTCAGCCTGGTGGTGGACCACCTCGCCAGCAAC
GGCCTGCTGCAGTCCCTCGCGGTTTTCCTGCCGGAGTCTGGCCTCGGCAC
CGACGCTGGCGCCTCTGTCGCTGCCGCGGCGCTATCCCGAGAGGACGTGC
TGCAGGCGCTGTCGCTGCCGGCGGACTCGGCGCTGTTCCGGCGCGTGATC
AGCCGGGCGGCGGAGGAGGGGGCGGATGGCCGGGCTGCGCCGGGGGCGGG
GGCTGGCGCTACTGTGGTCTTGACCGCGTCGGCGGCGGTGCTGCCCGCAG
AAGCAGGAGGAGGGGGAGGAGGGGGAGCGGCGACGGCGGCAGGCGGCAGC
TCGCAGCAGCAGCAGCAGCAGCAGCAGAAGCGTGTCTGCGGCCTGCTGGA
GGCGCTGGTGGGCGAAGTGGCGGCCAGGTCTCGCGCGGTCGCGGTCGACT
GCAACACGCAGACGGAGGAGGCTGGACGCAGCCACAAGGAGAATTTGGTG
TCTCGTCTGGAAGCGGTTCGGGAGACATGGCTGAAGCGGTCTGCGGACGA
GCGGCGGGAGCCGGCCCAGGACGTGACGGAGCGGATGCTTGCCTACCAGC
GGGAGTGCGAGTCGCGGGCAGCAACTCAGGCAAAGCTTTGTCTCGTCTGG
AAGCGGTTCGGGAGACATGGCTGAAGCGGTCTGCGGACGAGCGGCGGGAG
CCGGCCCAGGACGTGACGGAGCGGATGCTTGCCTACCAGCGGGAGTGCGA
GTCGCGGGCAGCAACTCAGGCAAAGCTTGCGGAACGGGAGACCTTCCGGG
AGCGCGACCTCGCCGCGCTTCGGCTGCAGATGACCTCGGCGCAGCGGCGA
GAGGTGGACGCCACGAGGAAGGAGCTGCAGTCGCAGTACGACGCGCGCGT
GGAGAGGCTGCGGGAGTCGGAGAGGGAGAGGGAGAGGCGTGACAAGGAAC
GCCTCCGGGATGCCGAGGTGTCTCAGTTCGAGGCCAGGCAGAGCCTGCTC
AGGGAGATGGACCTCCTCAGGACGCGCGAGCAAGCGGAACGGGAGACCTT
CCGGGAGCGCGACCTCGCCGCGCTTCGGCTGCAGATGACCTCGGCGCAGC
GGCGAGAGGTGGACGCCACGAGGAAGGAGCTGCAGTCGCAGTACGACGCG
CGCGTGGAGAGGCTGCGGGAGTCGGAGAGGGAGAGGGAGAGGCGTGACAA
GGAACGCCTCCGGGATGCCGAGGTGTCTCAGTTCGAGGCCAGGCAGAGCC
TGCTCAGGGAGATGGACCTCCTCAGGACGCGCGAGCAA
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