mRNA_L-elsbetiae_contig17920.5121.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17920.5121.1
Unique NamemRNA_L-elsbetiae_contig17920.5121.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17920.5121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17920contigL-elsbetiae_contig17920:1025..1813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size789
Cds size474
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17920.5121.1prot_L-elsbetiae_contig17920.5121.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17920 1259..1732 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815747.2111282-UTR-L-elsbetiae_contig17920:1024..12581622815747.2111282-UTR-L-elsbetiae_contig17920:1024..1258Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17920 1025..1258 +
1691683076.433286-UTR-L-elsbetiae_contig17920:1024..12581691683076.433286-UTR-L-elsbetiae_contig17920:1024..1258Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17920 1025..1258 +
1622815747.234027-UTR-L-elsbetiae_contig17920:1732..18131622815747.234027-UTR-L-elsbetiae_contig17920:1732..1813Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17920 1733..1813 +
1691683076.4642427-UTR-L-elsbetiae_contig17920:1732..18131691683076.4642427-UTR-L-elsbetiae_contig17920:1732..1813Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17920 1733..1813 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815747.2214491-CDS-L-elsbetiae_contig17920:1258..17321622815747.2214491-CDS-L-elsbetiae_contig17920:1258..1732Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17920 1259..1732 +
1691683076.4542456-CDS-L-elsbetiae_contig17920:1258..17321691683076.4542456-CDS-L-elsbetiae_contig17920:1258..1732Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17920 1259..1732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17920.5121.1

>prot_L-elsbetiae_contig17920.5121.1 ID=prot_L-elsbetiae_contig17920.5121.1|Name=mRNA_L-elsbetiae_contig17920.5121.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=158bp
MSFAVAAVFVASSATHLPLAAALHTDEITDNNVRLPVFAVAIAAAAAAAA
AAITGVVTIPNFADTKAAVAASAIVAAAIAIANAIAIATPAGLLTPTDQT
KSIPTVAMRPTGGSLAVAPSFYDSFFAGRRNKRGWISRPRNKMRWLVSPG
TTATCSS*
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mRNA from alignment at L-elsbetiae_contig17920:1025..1813+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17920.5121.1 ID=mRNA_L-elsbetiae_contig17920.5121.1|Name=mRNA_L-elsbetiae_contig17920.5121.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=789bp|location=Sequence derived from alignment at L-elsbetiae_contig17920:1025..1813+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGTCGCTTTGATCATGTGCGTTAGCAGCAACTCGCGTAGCACTTCGTT
CGGCCCGGCCAGCCGAAGGCGGTCTCTCTCTGTGGTAGCTTCTTGGTCGC
GAAGAAGGCCGACGGTGGTAGTGCTCCTTCTCCAGGGGATAGGCTTGTGA
TCTGTCTCGCGACGACTTCGTTTCCTGCCCGTACTCGTGGTTCCGGCCGA
GACTCCTTTGCTTTCGGCTCCGAGTTTCACACGAATGTCTTTTGCTGTTG
CCGCTGTATTCGTTGCTTCTTCCGCTACCCATCTTCCTCTCGCCGCCGCT
CTCCACACTGATGAGATCACTGACAACAACGTACGTCTTCCCGTCTTCGC
CGTTGCTATTGCTGCTGCTGCTGCTGCTGCTGCTGCCGCTATCACTGGGG
TGGTGACGATCCCGAACTTCGCTGATACTAAAGCTGCTGTTGCTGCTTCT
GCTATTGTTGCTGCTGCTATTGCTATCGCTAACGCTATCGCTATCGCCAC
TCCGGCCGGGTTGTTGACGCCCACTGACCAAACCAAATCCATCCCGACGG
TCGCCATGAGGCCGACCGGCGGTAGCCTTGCTGTTGCGCCTTCGTTTTAT
GACTCCTTCTTCGCGGGGAGACGCAACAAACGGGGGTGGATCAGCCGGCC
GCGGAATAAGATGCGGTGGCTGGTTTCCCCTGGAACCACCGCAACGTGTT
CGAGCTAGTCCTGAAGCTCGGTCATCTTCGTTGTCGTTCTGTCTGTGCGT
CACATCACCGTCCGCGCCGTGCGTGGTAGTTGCCTTCCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17920:1025..1813+

>mRNA_L-elsbetiae_contig17920.5121.1 ID=mRNA_L-elsbetiae_contig17920.5121.1|Name=mRNA_L-elsbetiae_contig17920.5121.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=948bp|location=Sequence derived from alignment at L-elsbetiae_contig17920:1025..1813+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTTTTGCTGTTGCCGCTGTATTCGTTGCTTCTTCCGCTACCCATCT
TCCTCTCGCCGCCGCTCTCCACACTGATGAGATCACTGACAACAACGTAC
GTCTTCCCGTCTTCGCCGTTGCTATTGCTGCTGCTGCTGCTGCTGCTGCT
GCCGCTATCACTGGGGTGGTGACGATCCCGAACTTCGCTGATACTAAAGC
TGCTGTTGCTGCTTCTGCTATTGTTGCTGCTGCTATTGCTATCGCTAACG
CTATCGCTATCGCCACTCCGGCCGGGTTGTTGACGCCCACTGACCAAACC
AAATCCATCCCGACGGTCGCCATGAGGCCGACCGGCGGTAGCCTTGCTGT
TGCGCCTTCGTTTTATGACTCCTTCTTCGCGGGGAGACGCAACAAACGGG
GGTGGATCAGCCGGCCGCGGAATAAGATGCGGTGGCTGGTTTCCCCTGGA
ACCACCGCAACGTGTTCGAGCTAGATGTCTTTTGCTGTTGCCGCTGTATT
CGTTGCTTCTTCCGCTACCCATCTTCCTCTCGCCGCCGCTCTCCACACTG
ATGAGATCACTGACAACAACGTACGTCTTCCCGTCTTCGCCGTTGCTATT
GCTGCTGCTGCTGCTGCTGCTGCTGCCGCTATCACTGGGGTGGTGACGAT
CCCGAACTTCGCTGATACTAAAGCTGCTGTTGCTGCTTCTGCTATTGTTG
CTGCTGCTATTGCTATCGCTAACGCTATCGCTATCGCCACTCCGGCCGGG
TTGTTGACGCCCACTGACCAAACCAAATCCATCCCGACGGTCGCCATGAG
GCCGACCGGCGGTAGCCTTGCTGTTGCGCCTTCGTTTTATGACTCCTTCT
TCGCGGGGAGACGCAACAAACGGGGGTGGATCAGCCGGCCGCGGAATAAG
ATGCGGTGGCTGGTTTCCCCTGGAACCACCGCAACGTGTTCGAGCTAG
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