mRNA_L-elsbetiae_contig17893.5107.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17893.5107.1
Unique NamemRNA_L-elsbetiae_contig17893.5107.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17893.5107.1 vs. uniprot
Match: D8LTP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP0_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 1.330e-8
Identity = 57/113 (50.44%), Postives = 73/113 (64.60%), Query Frame = 3 
Query:   36 EQGSSTAGSKQAGILSSVTRAA----LRGRTATLGAFNRSSPSRTDSSSSSPKPPGSSGGKPEGRNLSFGSLSGISSSASSALRGLAAGVGVVGXXXXXXXXXXXXXXTTNSE 362
            EQG+ ++G  + GI+SSV+RAA    LRGR+ATL A +         SS+SP PPG+  G+    +  FGSLSGISS+A+SALRGLA+GV + G       XXXX   TTNSE
Sbjct:   16 EQGTPSSGGSK-GIISSVSRAASSVALRGRSATLNALHIGRGQNRTESSASPLPPGNVKGETASGHHPFGSLSGISSTATSALRGLASGVHL-GAGGNGAGXXXXSGSTTNSE 126
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17893.5107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTP0_ECTSI1.330e-850.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17893contigL-elsbetiae_contig17893:475..3124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue9.3e-08
Seed eggNOG ortholog2880.D8LTP0
Hectar predicted targeting categoryother localisation
EggNOG OGs2CZJM@1,2SAPD@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size362
Cds size342
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17893.5107.1prot_L-elsbetiae_contig17893.5107.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17893 495..3124 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815745.3983142-UTR-L-elsbetiae_contig17893:474..4941622815745.3983142-UTR-L-elsbetiae_contig17893:474..494Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17893 475..494 +
1691683075.14943-UTR-L-elsbetiae_contig17893:474..4941691683075.14943-UTR-L-elsbetiae_contig17893:474..494Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17893 475..494 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815745.4132512-CDS-L-elsbetiae_contig17893:494..6261622815745.4132512-CDS-L-elsbetiae_contig17893:494..626Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17893 495..626 +
1691683075.1607196-CDS-L-elsbetiae_contig17893:494..6261691683075.1607196-CDS-L-elsbetiae_contig17893:494..626Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17893 495..626 +
1622815745.4251716-CDS-L-elsbetiae_contig17893:2914..31241622815745.4251716-CDS-L-elsbetiae_contig17893:2914..3124Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17893 2915..3124 +
1691683075.1726854-CDS-L-elsbetiae_contig17893:2914..31241691683075.1726854-CDS-L-elsbetiae_contig17893:2914..3124Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17893 2915..3124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17893.5107.1

>prot_L-elsbetiae_contig17893.5107.1 ID=prot_L-elsbetiae_contig17893.5107.1|Name=mRNA_L-elsbetiae_contig17893.5107.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
MATRTEQGSSTAGSKQAGILSSVTRAALRGRTATLGAFNRSSPSRTDSSS
SSPKPPGSSGGKPEGRNLSFGSLSGISSSASSALRGLAAGVGVVGLGVGG
GGGGGGSGSTTNSE
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mRNA from alignment at L-elsbetiae_contig17893:475..3124+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17893.5107.1 ID=mRNA_L-elsbetiae_contig17893.5107.1|Name=mRNA_L-elsbetiae_contig17893.5107.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2650bp|location=Sequence derived from alignment at L-elsbetiae_contig17893:475..3124+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCTGGGCTGCCAAAACCATGGCAACCCGCACGGAGCAAGGTTCTTCC
ACCGCTGGTTCTAAACAAGCAGGCATCCTGTCGAGCGTTACCAGAGCTGC
CCTGAGAGGGAGGACGGCGACGCTGGGTGCCTTTAATCGATCATCTCCCA
GCGTGAGTTCCCTGTGCGCTCCGTGCGCGTTCGCTGGACAGAGGGATGAA
AACGTCCACCTCTGTGTTCCTCTTCCCTCAGAAGTTGTTTGTTTTTGGTC
TACTGTCCGTGTTTGGTAGATGCTTTTCGGCAGTGTGCGCGAACGGGCGA
AACGAGAGCCGAGAAGAGTGGTGGAAGATTCGCCGGTACAACGGCATGAT
GCATCTACACAGATAGGTTGCATTCCGAGCAAGACGCTTGCTGGCAGGTA
CTGGTTGCTCGTACATCCCGCAGGCCACCTCAATTTTTCTGTTGGAATGG
TTTGTAAGAACTACTCCTATCTACCCACAGGTGTTGCGTAAATATTTCAA
GAAATATTGGACTACATACCGAAGTATTTTAGGTACAACGAGGAACTCGG
TGTCGATTGTGTGTTGCTTCCACGAAGCCAATTTTAACGATCCCCCCAGG
CACGTGGGAGCGACCGGTGGGTGATAGGTTGATAGGTTACACTTACATAC
ATATGTAACTGCATAGGTTGGTCGATTGCTCCGACAACGAAATACATCGA
AATATATTAGGAGTATTTATAATCGTAGATACATAGACTCCAAATTGTAC
GAATCCCAGAATCGTGTTCGGAGCGGCTCTTCGGACTCCTCTCTCTCCCA
TCCAATAGGACTGCTGGAAAGACGTGAAGGTCTCTTCGTGCCGAGCGATG
TGCAGCATTTCAGCGCGGCGTGCGTGCATACCATGACAGAGAAACGGGCG
TTCGGAGTAAATGATAAAATGAAATTGTATACAGATTTAGGACTACAGAT
TTTGTTTACAAGGGAAGCCTGCTGCAGTAAAAATCTCTCCCGTCGTAAAT
ATAGATAAGCAGTACATACCGGCCGGCTAATATCCAAACCTGAAATCGGG
CTCCGGCGGGCTTTCTTATGTATGTTTGTTGGAAGTCGAGCATGAACACT
TTCTTATGTGATGTATAGGATTTAGTGCGGCACTCGCCGCCCAGGCTGGA
CACTTTCCTAATGATTTTCTTCGTACCTACACAATTTAACACTCAGGCTA
ACGCTCTCACTCGGAGCTAAGAGTATGTGTCTTACTACCTAGCGGGGTAC
TGCTGTCTGTGTACCTACATTTTAACACTCAGGCTAACGCTCTCACTCGG
AGCTAAGAGTATGTGTCTTACTACCTAGCGGGGTACTGCTGTCTGTGTAC
CTACATCATGTACATCAGATAAATATTCTTAATGTAACCGGTTAATTACT
TCAACGTATTTTTTTTTCAAAAAACGATTTTTCAGAATGTGTCTCCATCA
GTCAGTCCCCCTGGAACGACTTTTTCCCAGGTTGGACGTACGCAAGAGTA
GCAGGTCTTACCGACGAAATCAAGATTGAAAATTTTCAACTGCCGTTTTT
ATCGCACAACCTGTGCGATACATAGCACAGTGCCCCGAGATCGCACATGC
CTGCGCGATAAAAAATCCAGTTTTATTAAACTATTTAGAAATAGTGTGTC
CAACAGCAGTCCCTCTGGAACGACTTTTTGACAGGTTGGACGTACGTAAA
CCGTTGACATTTGTAGAACATTTGTTAGACTACTGTGTGGGTGCCAACAA
CATTAAAAGAAGAAAAGAGTAAAACTTCCCCATAGAAAGGCGAGACCTCG
AGGTGACTTGGCAATTCCACACAGGCTCTGTGTATACGCCGTCCCGCCGT
CCCGCGCGAGTGGAAATACACCGAACGAACACGTTGAAGTTCGGCTTGTT
TTTTGGCATGAGTTGCGCTCGCCAACCCTAGCAAGCTACCTCGGTAGCTC
GTTCCATGACAGTCCCGCGGCGAATTCAGGGCAGAAGCTGCGTCTATTCG
CCCGGCGTCCATTTACCCGGAGAGGGTGTGGTGTGTGGTGTGTGCAAAGA
TGAGGAATGTCAGAGTCAAGCGTCGGGTTTCGGTTGGTGGGCGACTTGCA
GGGAGTTCGCGAGTGCGAGAGGGATGAAGCAACGTCGTGAAAGCACGTGC
TATCTTCAAGACTCTCACGATTCCGCTCTCGGTACGACGGCCCGCCCCAG
ACGCAGCGGGAGCTTCGCTAGATTTCCCCGCCCCCCCCGTTTTGGCGTCA
GACGAGCGCGAAAGATGGTGAGGAGCGCAGCACGTCTGCCCCTCTGAACT
ACACCAACAGATCTCGCGCCCCATGTGGCCATCCCCTCTCTCCTTCGCCT
GTCGATGTAAATAAAATCATACCAATATTAACCAAATCTATGATTCAAAT
CCAAAATCAAATCGACATCTTTGCATCTCCAACACCGCAGCGTACAGACT
CTTCATCGTCATCCCCGAAGCCTCCCGGCAGCAGTGGCGGCAAGCCCGAG
GGCCGCAACCTCTCCTTCGGGAGCTTGTCCGGGATTTCGAGCAGTGCGTC
GTCGGCGCTCAGAGGCTTGGCGGCCGGCGTGGGCGTTGTTGGGCTGGGGG
TTGGCGGCGGCGGTGGCGGCGGTGGCAGCGGTAGCACTACCAACTCGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17893:475..3124+

>mRNA_L-elsbetiae_contig17893.5107.1 ID=mRNA_L-elsbetiae_contig17893.5107.1|Name=mRNA_L-elsbetiae_contig17893.5107.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig17893:475..3124+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAACCCGCACGGAGCAAGGTTCTTCCACCGCTGGTTCTAAACAAGC
AGGCATCCTGTCGAGCGTTACCAGAGCTGCCCTGAGAGGGAGGACGGCGA
CGCTGGGTGCCTTTAATCGATCATCTCCCAGCATGGCAACCCGCACGGAG
CAAGGTTCTTCCACCGCTGGTTCTAAACAAGCAGGCATCCTGTCGAGCGT
TACCAGAGCTGCCCTGAGAGGGAGGACGGCGACGCTGGGTGCCTTTAATC
GATCATCTCCCAGCCGTACAGACTCTTCATCGTCATCCCCGAAGCCTCCC
GGCAGCAGTGGCGGCAAGCCCGAGGGCCGCAACCTCTCCTTCGGGAGCTT
GTCCGGGATTTCGAGCAGTGCGTCGTCGGCGCTCAGAGGCTTGGCGGCCG
GCGTGGGCGTTGTTGGGCTGGGGGTTGGCGGCGGCGGTGGCGGCGGTGGC
AGCGGTAGCACTACCAACTCGGAGCGTACAGACTCTTCATCGTCATCCCC
GAAGCCTCCCGGCAGCAGTGGCGGCAAGCCCGAGGGCCGCAACCTCTCCT
TCGGGAGCTTGTCCGGGATTTCGAGCAGTGCGTCGTCGGCGCTCAGAGGC
TTGGCGGCCGGCGTGGGCGTTGTTGGGCTGGGGGTTGGCGGCGGCGGTGG
CGGCGGTGGCAGCGGTAGCACTACCAACTCGGAG
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