mRNA_L-elsbetiae_contig1787.5096.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1787.5096.1
Unique NamemRNA_L-elsbetiae_contig1787.5096.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1787.5096.1 vs. uniprot
Match: D7FZG4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG4_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 9.630e-40
Identity = 71/81 (87.65%), Postives = 76/81 (93.83%), Query Frame = 1 
Query:   25 LSRRGSGSVFVDRVGITRIPDRAWTIALDYLELGEGLRCRQLGRVFRDTVEASLSVLALSGVNTLTWATPENLTFLTRFKN 267
            +SRR SG +F DRVGITRIPDRAWTIALDYLELGEG+RCRQLGR FRDTVEASLSVLALSGVNT+TWATP+NL FLTRFKN
Sbjct:  116 MSRRASGLIFADRVGITRIPDRAWTIALDYLELGEGMRCRQLGRAFRDTVEASLSVLALSGVNTITWATPDNLAFLTRFKN 196
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BLAST of mRNA_L-elsbetiae_contig1787.5096.1 vs. uniprot
Match: A0A6H5L111_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L111_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.330e-12
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:   19 GGLSRRGSGSVFVDRVGITRIPDRAWTIALDYLELGE 129
            G LSRR SGS+F DRVGITRIPDRAWTIALDYLELGE
Sbjct:  182 GVLSRRASGSIFADRVGITRIPDRAWTIALDYLELGE 218
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1787.5096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZG4_ECTSI9.630e-4087.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L111_9PHAE3.330e-1289.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1787contigL-elsbetiae_contig1787:22051..23454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size269
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.661678-CDS-L-elsbetiae_contig1787:22050..221791622815744.661678-CDS-L-elsbetiae_contig1787:22050..22179Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1787 22051..22179 +
1691683074.723538-CDS-L-elsbetiae_contig1787:22050..221791691683074.723538-CDS-L-elsbetiae_contig1787:22050..22179Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1787 22051..22179 +
1622815744.6761982-CDS-L-elsbetiae_contig1787:23314..234521622815744.6761982-CDS-L-elsbetiae_contig1787:23314..23452Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1787 23315..23452 +
1691683074.7327728-CDS-L-elsbetiae_contig1787:23314..234521691683074.7327728-CDS-L-elsbetiae_contig1787:23314..23452Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1787 23315..23452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1787.5096.1prot_L-elsbetiae_contig1787.5096.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1787 22051..23452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1787.5096.1

>prot_L-elsbetiae_contig1787.5096.1 ID=prot_L-elsbetiae_contig1787.5096.1|Name=mRNA_L-elsbetiae_contig1787.5096.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
TGSRPGGGLSRRGSGSVFVDRVGITRIPDRAWTIALDYLELGEGLRCRQL
GRVFRDTVEASLSVLALSGVNTLTWATPENLTFLTRFKN
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mRNA from alignment at L-elsbetiae_contig1787:22051..23454+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1787.5096.1 ID=mRNA_L-elsbetiae_contig1787.5096.1|Name=mRNA_L-elsbetiae_contig1787.5096.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1404bp|location=Sequence derived from alignment at L-elsbetiae_contig1787:22051..23454+ (Laminarionema elsbetiae ELsaHSoW15)
ACGGGCAGCAGGCCCGGGGGTGGCTTGTCGAGGAGGGGCTCGGGGTCGGT
ATTCGTGGACAGAGTCGGGATCACGAGGATCCCGGACCGGGCGTGGACGA
TCGCGCTGGACTACCTCGAGCTAGGGGAGGTGGGTGGTGGTGTGATGCGG
GGGAGAGTGGGGGGGGGGTGTTGTTTGGGGTGCGCTGTTTTTTCTTGTTG
ACGCCTTTTTTTTTCTTTTTTCTTTTTTTTTTTTTTTTTTTGCGTTTGTG
TTGGTGTGGGGGGGAGCGCTGTTAGTCGCGACGAAGAACGGAACGCCTCA
TGTTGCGGAGACCCGCCCCGTGGTACACCATGGGCAGCCACGTGGCCGCC
TCGCTGCTCTTGTATCAGAGGGAGGGCCAAGACTACTACTCCTGCTGTCT
TTGTCTCCGACCGGCCAAGCATTGAAGCGCGAGAGAAAGGACAGACGGGT
AAAATACCTGTTATTTTTTCATTCTTTCCTGCATTAGACATGTTACACAC
CCAGCCCGCAGACATCTCACGTGAGTATATGGTCTACAAGAGGAGGTACA
TACTATTTCATGCTGTTTTCACGGATCTGCGCCATGCCGCGCGGAATTTT
TCGTGGAGGTTTTTTTTCACGATGCCGCGAGATTTCTGAAAGATGAAAAG
AGGGCAGTCGGGGCGGGGCGTTCCTCGCACTAGAGAACTACCCGCAAGCA
GACGCCAGCTTTGCGCGGCATTTCCGGTTTTGAATCAAGCGAGGTAACAG
GCACATCGCTTCATGCACGACGTTGACCGCAGCCTTATTAAGTGTTGTGC
ATGTATCGGGAGGTGGCAGGCAGCACCGGCCGCTCTTGCTGCGACAAACC
GGAAAATATATGTAGCGGTGCTGAACGGTAGTGACCGAGCTCGCCAAATG
ATCTGCATTTGTTTATTTCGGCCTGCCTGTGGTACTACTGTGCGGTAGTG
ACCGAGCTCGCCAATGATCTGCATTTGTTTGTTTGTTTCGGCCTGCCTGT
GGTACTACTGTGCGGTAGTGACCGAGCTCGCCAATGATCTGCATTTGTTT
GTTTATTTCGGCCTGCCTGTGGTACTACTGTGCGGTAGGGACCGAGCTCG
CAAATGATATGCATGTGTTTGTTTATTTCGGCCTGCCTGCCTGCCTGCCT
GCCTGCCTGCCTGCCTGCCTGCCTGCCTACCTGCCTGCCTGCCTCTTGCC
TTGCGTTGCCTTGCCCTGCCCTGTCCGCACGAAACGCACGCGCACCACAA
AACCCCAACTTCAGGGCTTGAGGTGCCGGCAGCTCGGGCGCGTTTTCCGC
GACACGGTGGAGGCGTCCCTGTCCGTGCTGGCCCTGTCGGGGGTGAACAC
CCTCACCTGGGCTACTCCGGAGAACCTGACGTTCCTCACGCGCTTCAAAA
ACAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1787:22051..23454+

>mRNA_L-elsbetiae_contig1787.5096.1 ID=mRNA_L-elsbetiae_contig1787.5096.1|Name=mRNA_L-elsbetiae_contig1787.5096.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig1787:22051..23454+ (Laminarionema elsbetiae ELsaHSoW15)
ACGGGCAGCAGGCCCGGGGGTGGCTTGTCGAGGAGGGGCTCGGGGTCGGT
ATTCGTGGACAGAGTCGGGATCACGAGGATCCCGGACCGGGCGTGGACGA
TCGCGCTGGACTACCTCGAGCTAGGGGAGACGGGCAGCAGGCCCGGGGGT
GGCTTGTCGAGGAGGGGCTCGGGGTCGGTATTCGTGGACAGAGTCGGGAT
CACGAGGATCCCGGACCGGGCGTGGACGATCGCGCTGGACTACCTCGAGC
TAGGGGAGGGCTTGAGGTGCCGGCAGCTCGGGCGCGTTTTCCGCGACACG
GTGGAGGCGTCCCTGTCCGTGCTGGCCCTGTCGGGGGTGAACACCCTCAC
CTGGGCTACTCCGGAGAACCTGACGTTCCTCACGCGCTTCAAAAACGGCT
TGAGGTGCCGGCAGCTCGGGCGCGTTTTCCGCGACACGGTGGAGGCGTCC
CTGTCCGTGCTGGCCCTGTCGGGGGTGAACACCCTCACCTGGGCTACTCC
GGAGAACCTGACGTTCCTCACGCGCTTCAAAAAC
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