mRNA_L-elsbetiae_contig1785.5086.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1785.5086.1 vs. uniprot
Match: D8LIM5_ECTSI (Radial spoke protein 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIM5_ECTSI) HSP 1 Score: 513 bits (1320), Expect = 5.410e-161 Identity = 271/335 (80.90%), Postives = 299/335 (89.25%), Query Frame = 1 Query: 1 LPLSSKAIHALYDAEFERLVRQLKALCKSQDPKGTGSLPRAEFKQCISADRCGGLTKIESKLLLNLLPKDSHGNVIYRKLGAGLEQVRFTTLRNTVAEASATDTQKYLMALCRDEDAKSDSLGSKAHLKINGDIMAIGGKHYSGVLRARQLTKLLLNAPLLSLSRLHVTALMSQAHVVDGMINYVELVPMIAKTVEGMFHPRSLKMRHEIFKNRGSGGXXXXXXXXXXALGEGSSLLQPMGAATTVLGKSREDVQRIFVDVLREDEQGSGIDRLKDPATFSRCIASLGLDLEPDTISALWVAADLDSRHGTTFVDVVDFCFNCVLFMEREKEARV 1005 L L +AIHALYDAEF+RLVRQLK LCKS DP GTG LPRAEFKQCISADRCGGLTKIESKLLLNLLPKDSHGNV+YRKLGAGLEQVRFTTLRNTVAEASA+DTQKYLMALCR+E+AKSD LG+K H+K NGD +AIGGKHYSGVLRARQLTKLLLNAPLLSLSRLHVTALMSQA+++DGM+NY+ELVPMIAKT+EGMFHP SLKMRHEIF N + G XXXXXXXXX G AT V GKSR+D+QR V++LRED+QG+ I+RL+DPATF+RC+ASLGLDLEPDTI+ALWVAADLD+R GTTFVDVVDFCFNCVLFMEREKEARV Sbjct: 792 LDLDQQAIHALYDAEFDRLVRQLKTLCKSHDPNGTGVLPRAEFKQCISADRCGGLTKIESKLLLNLLPKDSHGNVVYRKLGAGLEQVRFTTLRNTVAEASASDTQKYLMALCREEEAKSDPLGNKGHMKSNGDAVAIGGKHYSGVLRARQLTKLLLNAPLLSLSRLHVTALMSQANILDGMVNYIELVPMIAKTIEGMFHPWSLKMRHEIFNN--NRGPXXXXXXXXXXXXXXXXXXXXXGTAT-VRGKSRDDIQRKIVEILREDKQGAAIERLRDPATFARCMASLGLDLEPDTINALWVAADLDTREGTTFVDVVDFCFNCVLFMEREKEARV 1123
BLAST of mRNA_L-elsbetiae_contig1785.5086.1 vs. uniprot
Match: A0A6H5K287_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K287_9PHAE) HSP 1 Score: 383 bits (983), Expect = 3.020e-112 Identity = 208/259 (80.31%), Postives = 227/259 (87.64%), Query Frame = 1 Query: 16 KAIHALYDAEFERLVRQLKALCKSQDPKGTGSLPRAEFKQCISADRCGGLTKIESKLLLNLLPKDSHGNVIYRKLGAGLEQVRFTTLRNTVAEASATDTQKYLMALCRDEDAKSDSLGSKAHLKINGDIMAIGGKHYSGVLRARQLTKLLLNAPLLSLSRLHVTALMSQAHVVDGMINYVELVPMIAKTVEGMFHPRSLKMRHEIFKNRGSGGXXXXXXXXXXALGEGSSLLQPMGAATTVLGKSREDVQRIFVDVLRE 792 KAIHALYDAEF+RLVRQLKALCKSQD GTG LPRAEFKQCISADRCGGLTKIESKLLLNLLPKDSHGNV+YRKLGAGLEQVRFTTLRNTVAEASA+DTQKYLMALCR+E+AKSD LG+K H+K NGD +AIGGKHYSGVLRARQLTKLLLNAPLLSLSRLHVTALMSQA+++DGM+NYVELVPMIAKT+EGMFHP S+KMRHEIF N + G XXXXXXXXX TV GKSR+D+QR V++LRE Sbjct: 923 KAIHALYDAEFDRLVRQLKALCKSQDANGTGVLPRAEFKQCISADRCGGLTKIESKLLLNLLPKDSHGNVVYRKLGAGLEQVRFTTLRNTVAEASASDTQKYLMALCREEEAKSDPLGNKGHMKSNGDAVAIGGKHYSGVLRARQLTKLLLNAPLLSLSRLHVTALMSQANILDGMVNYVELVPMIAKTIEGMFHPWSIKMRHEIFNN--NRGPXXXXXXXXXXXXXXXXXXXXXXXTATVRGKSRDDIQRKIVEILRE 1179
BLAST of mRNA_L-elsbetiae_contig1785.5086.1 vs. uniprot
Match: A0A7S0SSP5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SSP5_9STRA) HSP 1 Score: 104 bits (260), Expect = 2.920e-21 Identity = 82/288 (28.47%), Postives = 135/288 (46.88%), Query Frame = 1 Query: 163 LTKIESKLLLNLLPKDSHGNVIYRKLGAGLEQVRFTTLRNTVAEASATDTQKYLMALCRDEDAKSDSL-GSKAHLKINGDIMAIGGKHYSGVLRARQLTKLLLNAPLLSLSRLHVTALMSQAHVV-DGMINYVELVPMIAKTVEGMFHPRSLKMRHEIFKNRGSGGXXXXXXXXXXALGEGSSLLQPMGAATTVLGKSREDVQRIFVDVLRE---DEQGSGIDRLKDPATFSRCIASLGLDLEPDTISALWVAADLDSRHGTTFVDVVDFCFNCVLFMEREKEARVMK 1011 ++ IE ++ LLPKDS G +IY L L +V+F TL+N++ E+ +D Q+YL LC+ E+ K L G + ++ +G L R L +L NAP LSL+RL V ++S+A + DG+INY VP+I+KT+E MF P +LK R E+ + + LL G ++++ ++ + + + D+ G D F CI SL L+L I + F N ++ +E+EK ++++ Sbjct: 4 VSDIEINMICQLLPKDSFGRIIYNNLEDILLKVKFITLKNSIIESQGSDLQRYLFDLCKIEEDKMKQLKGGEDNIS-------------AGFLPLRTLINILYNAPRLSLTRLQVLVILSEATISNDGLINYYSFVPIISKTIELMFSPLALKQRAELIET--------------VSFSPSEILLS---------GLNKDEFEKKLMTLFKSYDIDKNG-----YLDEYEFIACIESLELNLTRSEIMVXXXXXXXXXXXXXXXXXXIGFFVNNLIHLEKEKHLKILQ 250
BLAST of mRNA_L-elsbetiae_contig1785.5086.1 vs. uniprot
Match: A0A482S1E4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S1E4_9ARCH) HSP 1 Score: 103 bits (256), Expect = 1.030e-19 Identity = 59/174 (33.91%), Postives = 99/174 (56.90%), Query Frame = 1 Query: 127 FKQCISADRCGGLTKIESKLLLNLLPKDSHGNVIYRKLGAG----LEQVRFTTLRNTVAEASATDTQKYLMALCRDEDAKSDSLGSKAHLKINGDIMAIGGKHYSGVLRARQLTKLLLNAPLLSLSRLHVTALMSQAHVVDGMINYVELVPMIAKTVEGMFHPRSLKMRHEIFK 636 K+C+ + +++ E +L +LP+D G + Y L +VRF ++N + EA + QKYL+ LCR+E+A+ + H + N + +G++ R L +L N+ LSLSRL V +MS+A V+DGMINY + +P++AK +E MF P++L+ R E+ + Sbjct: 1 MKRCLHSVTAAKVSEGEVNMLCQMLPRDQFGRIKYNTTPTAFFETLSKVRFMAMKNALIEAQGSGLQKYLLDLCREEEARLE------HFEGNMEKFVP-----TGIVPCRSLINILSNSSRLSLSRLQVLVIMSEASVLDGMINYFQFIPVVAKAIEIMFEPKALRQRAELIE 163
BLAST of mRNA_L-elsbetiae_contig1785.5086.1 vs. uniprot
Match: C1MX73_MICPC (Flagellar radial spoke protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MX73_MICPC) HSP 1 Score: 67.0 bits (162), Expect = 1.060e-7 Identity = 81/327 (24.77%), Postives = 136/327 (41.59%), Query Frame = 1 Query: 25 HALYDAEFERLVRQLKALCKSQDPKGTGSLPRAEFKQCISADRCGGLTKIESKLLLNLLPKDSHGNVIYRKLGAGLEQVRFTTLRNTV-AEASATDTQKYLMALCRDEDAKSDSLGSKAHLKINGDIMAIGGKHYSGVLRARQLTKLLLNAPLLSLSRLHVTALMSQAHVVDG-MINYVELVPMIAKTVEGMFHPRSLKMRHEIFKNRGSGGXXXXXXXXXXALGEGSSLLQPMGAATTVLGKSREDVQRIFVDVLRE-DEQGSG-IDRLKDPATFSRCIASLGLDLEPDTISALWVAADLDSRHGTTFVDVVDFCFNCVLFMEREK 993 H L+ E L ++ + D G G+L R EF +C+ + G LT+ E LLL+ + D G V Y + + ++ V AEA+ MAL + K ++G K +G H + V +A + L+A L LS+L +TA+MS+A ++ ++Y P A+ + M S R + EG+ +L R+DV+ + ++ D +G G +DR + S A+ LDL+P I+AL A D + T+ ++ DF + + RE+ Sbjct: 177 HLLHGMPREELEEMMERIFSDADADGNGTLDRKEFSKCLHSAELG-LTRKEINLLLSDVDVDDDGLVSYSEFAPLCFDILVERFKDDVLAEAALESADALTMALIEEFQRKETTIGGKDE--------PLGKMHRNLVKQAL----VDLSAEFLGLSKLQITAIMSEATTIENDEVDYEIFAPSAARMIYSMVDTASQAQRVNAIAKLSNT--------------EGAHVLHQ---------SDRDDVRELIALAFQDADVEGRGALDRDQVYDILSDLGAN-SLDLKPGEINALVSAVDENEDGEVTYAELTDFLCKVLEHLSRER 466
BLAST of mRNA_L-elsbetiae_contig1785.5086.1 vs. uniprot
Match: D8TZ99_VOLCA (Radial spoke protein 7 n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TZ99_VOLCA) HSP 1 Score: 66.6 bits (161), Expect = 1.750e-7 Identity = 83/340 (24.41%), Postives = 142/340 (41.76%), Query Frame = 1 Query: 7 LSSKAIHALYDAEFERLVRQLKALCKSQDPKGTGSLPRAEFKQCISADRCGGLTKIESKLLLNLLPKDSHGNVIYRKLGAGLEQVRFTTLRNTVAE----ASATDTQKYLMALCRDEDAKSDSLGSKAHLKINGDIMAIGGKHYSGVLRARQLTKLL--LNAPLLSLSRLHVTALMSQAHVV-DGMINYVELVPMIAKTVEGMFHPRSLKMRHEIFKNRGSGGXXXXXXXXXXALGEGSSLLQPMGAATTVLGKSREDVQRIFVDVL-REDEQGSGIDRLKDPATFSRCIASLG----LDLEPDTISALWVAADLDSRHGTTFVDVVDFCFNCVLFMERE 990 + S +H L E + L+ LK K+ D G+G+L R EFK+ + A G LT+ + L+L+ + D G V Y + QV ++ + ++ + Q+ L+ RD D+++ +G+L RQ+ + L+ L L+ L +L+SQA DGM+ Y++ VP+ A + M S+K R K A+ E + Q +GA E ++ + D R DE+G+G L + SL L L + A++ A D D + ++V+F + + +ERE Sbjct: 281 VESMLLHGLPQEELQALM--LKVFRKA-DADGSGTLNRHEFKEALKAAELG-LTRKDINLILSHIDVDKDGLVSYEEFIPVCFQVLVERFKDEIVVNDILSNTDELQQMLLTAFRDADSEN-----------------------TGLLTQRQVKAIFKELSYQALGLTTLQTVSLLSQAPTTPDGMVQYIQFVPLAASIIRSMNDVESMKSRMSAIK----------------AVAEAGGI-QALGALDL------EQLRAVLSDSFQRVDEEGTGQLTLPQVTEVIESLNSLAPEANLALSEQHMKAMFAAIDADESGTVDWTELVNFICDALEHVERE 570
BLAST of mRNA_L-elsbetiae_contig1785.5086.1 vs. uniprot
Match: A0A8J4CQW5_9CHLO (Uncharacterized protein n=3 Tax=Volvox TaxID=3066 RepID=A0A8J4CQW5_9CHLO) HSP 1 Score: 60.8 bits (146), Expect = 9.040e-6 Identity = 79/332 (23.80%), Postives = 136/332 (40.96%), Query Frame = 1 Query: 22 IHALYDAEFERLVRQLKALCKSQDPKGTGSLPRAEFKQCISADRCGGLTKIESKLLLNLLPKDSHGNVIYRKLGAGLEQVRFTTLRNTVAEASATDTQKYLMALCRDEDAKSDSLGSKAHLK-INGDIMAIGGKHYSGVLRARQLTKLL--LNAPLLSLSRLHVTALMSQAHVV-DGMINYVELVPMIAKTVEGMFHPRSLKMRHEIFKNRGSGGXXXXXXXXXXALGEGSSLLQPMGAATTVLGKSREDVQRIFVDVL-REDEQGSGIDRLKDPATFSRCIASLG----LDLEPDTISALWVAADLDSRHGTTFVDVVDFCFNCVLFMERE 990 +H L E + L+ ++ K D G+G L R EFK+ + A G LT+ + L+L+ + D G V Y + QV L+ +DE +D LG+ L+ + +G+L RQ+ + L+ L L+ L +L+SQA DGM+ Y++ VP+ A + M ++K R K + G +Q +GA + ++ + D R DE+G+G L + SL L+L + A++ A D+D + ++V+F + + +ERE Sbjct: 193 LHGLPQEELQALMLKV---FKKADADGSGQLNRHEFKEALKAAELG-LTRKDINLILSHIDIDKDGLVSYEEFIPVCFQV--------------------LVERFKDEIVVNDILGNTDELQQMLLTAFQEADPDNTGLLTQRQVKAIFKELSYRALGLTTLQTVSLISQAPTTPDGMVQYIQFVPLAASIIRSMNDVETMKSRMSAIKAVAAAGG-----------------IQALGALDL------DTLRAVLSDAFQRVDEEGTGQLALPQVMEVIESLNSLAPDANLELSDQHMKAMFAAIDVDESGTVDWTELVNFLCDALEHVERE 477
BLAST of mRNA_L-elsbetiae_contig1785.5086.1 vs. uniprot
Match: A0A7S3UWC3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWC3_HETAK) HSP 1 Score: 58.9 bits (141), Expect = 1.360e-5 Identity = 46/176 (26.14%), Postives = 78/176 (44.32%), Query Frame = 1 Query: 430 GVLRARQLTKLLLNAPLLSLSRLHVTALMSQAHVVDGMINYVELVPMIAKTVEGMFHPRSLKMRHEIFKNRGSGGXXXXXXXXXXALGEGSSLLQPMGAATTVLGKSREDVQRIFVDVLREDEQGSGIDRLKDPATFSRCIASLGLDLEPDTISALWVAADLDSRHGTTFVDVVDF 957 GVL + ++L + LSL+RL V LMS A+++DG +NY++ +P+ AKT+EGM+ P + + I + S GKS E+ + + +G D + D ++F C+ S +L D I ++ AAD D + + + F Sbjct: 16 GVLTRTRFAEILQESEKLSLTRLQVITLMSGAYIMDGNLNYLQFLPLAAKTIEGMYDPALFEKKQAIKQKIFS-------------------------------GKSEEEYKAQLKAKFKTYAKG---DDILDASSFQSCVHSFDPNLTKDQIKEMYDAADEDGDETVSVDEFLKF 157 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1785.5086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1785.5086.1 >prot_L-elsbetiae_contig1785.5086.1 ID=prot_L-elsbetiae_contig1785.5086.1|Name=mRNA_L-elsbetiae_contig1785.5086.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=617bp MALCRDEDAKSDSLGSKAHLKINGDIMAIGGKHYSGVLRARQLTKLLLNAback to top mRNA from alignment at L-elsbetiae_contig1785:369..6358+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1785.5086.1 ID=mRNA_L-elsbetiae_contig1785.5086.1|Name=mRNA_L-elsbetiae_contig1785.5086.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5990bp|location=Sequence derived from alignment at L-elsbetiae_contig1785:369..6358+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1785:369..6358+ >mRNA_L-elsbetiae_contig1785.5086.1 ID=mRNA_L-elsbetiae_contig1785.5086.1|Name=mRNA_L-elsbetiae_contig1785.5086.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3702bp|location=Sequence derived from alignment at L-elsbetiae_contig1785:369..6358+ (Laminarionema elsbetiae ELsaHSoW15)back to top |