mRNA_L-elsbetiae_contig178.5066.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig178.5066.1
Unique NamemRNA_L-elsbetiae_contig178.5066.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig178.5066.1 vs. uniprot
Match: A0A6H5LJ37_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LJ37_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 1.130e-55
Identity = 98/117 (83.76%), Postives = 104/117 (88.89%), Query Frame = 2
Query:    2 TISEDLRNALNAFLYRTGESTDKFMLVHVSNQPEQFD*AVNDRVNEMVPFGLPGREERLRMVNLYMKGYLLDPPGRVKAITVDGVEE-----VADLTEGFSGREIAKLAIAWQAAAY 337
            TISEDLRNALNAFLYRTGESTDKFMLV+ SNQPEQFD AVNDR++EMV F LPGREERLRMVNLYMK YLLDPPG+ K I VDG+E+     VADLTEGFSGREIAKLAIAWQAAAY
Sbjct:  433 TISEDLRNALNAFLYRTGESTDKFMLVYASNQPEQFDWAVNDRIDEMVRFDLPGREERLRMVNLYMKNYLLDPPGKAKVIRVDGIEDSHLQDVADLTEGFSGREIAKLAIAWQAAAY 549          
BLAST of mRNA_L-elsbetiae_contig178.5066.1 vs. uniprot
Match: A0A835YR91_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR91_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.710e-47
Identity = 86/116 (74.14%), Postives = 97/116 (83.62%), Query Frame = 2
Query:    5 ISEDLRNALNAFLYRTGESTDKFMLVHVSNQPEQFD*AVNDRVNEMVPFGLPGREERLRMVNLYMKGYLLDPPGRVKAITVDGVEE-----VADLTEGFSGREIAKLAIAWQAAAY 337
            ISEDLRNALNAFLYRTGE+TDKFMLV+ SNQPEQFD AVNDR++EMVPF LPGR+ER+RM+NLYM  +LL   G+ K I V GVE+      AD TEGFSGREI+KLAIAWQAAAY
Sbjct:  420 ISEDLRNALNAFLYRTGEATDKFMLVYASNQPEQFDWAVNDRIDEMVPFELPGRDERMRMINLYMNKFLLAKTGKAKTIVVQGVEDSHLQAAADATEGFSGREISKLAIAWQAAAY 535          
BLAST of mRNA_L-elsbetiae_contig178.5066.1 vs. uniprot
Match: A0A7S2Y4I1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y4I1_9STRA)

HSP 1 Score: 153 bits (386), Expect = 2.160e-44
Identity = 84/118 (71.19%), Postives = 93/118 (78.81%), Query Frame = 2
Query:    5 ISEDLRNALNAFLYRTGESTDKFMLVHVSNQPEQFD*AVNDRVNEMVPFGLPGREERLRMVNLYMKGYLLDPPGRVK--AITVDGVE-----EVADLTEGFSGREIAKLAIAWQAAAY 337
            ISEDLRNALNAFLYRTGE+T KFMLV+ SNQP+QFD A+NDR++EMV F LPG EER RMV+LYMK YLLD     K  AITV+ +E     E A  TE FSGREIAKLAIAWQAAAY
Sbjct:   74 ISEDLRNALNAFLYRTGEATGKFMLVYASNQPDQFDWAINDRIDEMVEFQLPGLEERKRMVSLYMKKYLLDQQDAAKGRAITVEDIEDNHIDEAAKATEHFSGREIAKLAIAWQAAAY 191          
BLAST of mRNA_L-elsbetiae_contig178.5066.1 vs. uniprot
Match: A0A7S3HKW4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HKW4_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.160e-41
Identity = 75/116 (64.66%), Postives = 93/116 (80.17%), Query Frame = 2
Query:    5 ISEDLRNALNAFLYRTGESTDKFMLVHVSNQPEQFD*AVNDRVNEMVPFGLPGREERLRMVNLYMKGYLLDPPGRVKAITVDGVEEV-----ADLTEGFSGREIAKLAIAWQAAAY 337
            ISED+RNALNAFLYRTGE++ KFM+V+ SNQPEQFD A+NDR+++MV F LP  +ER+RM++ YM  +LL PP   K ITV+GV+E      A  TEG+SGREI+KLAIAWQAAAY
Sbjct:  227 ISEDMRNALNAFLYRTGEASYKFMIVYASNQPEQFDWAINDRIDDMVEFRLPSFDERVRMISQYMDSFLLHPPAGSKTITVEGVDEALIRSFASATEGYSGREISKLAIAWQAAAY 342          
BLAST of mRNA_L-elsbetiae_contig178.5066.1 vs. uniprot
Match: A0A7S2V1G8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1G8_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.240e-41
Identity = 82/141 (58.16%), Postives = 97/141 (68.79%), Query Frame = 2
Query:    5 ISEDLRNALNAFLYRTGESTDKFMLVHVSNQPEQFD*AVNDRVNEMVPFGLPGREERLRMVNLYMKGYLLD----------------PPGRVKA---------ITVDGVEE-----VADLTEGFSGREIAKLAIAWQAAAY 337
            ISEDLRNALNAFLYRTGE+TD+FM+V+ SNQPEQFD A+NDR++EMV F LPG EER RM+  Y++ YLLD                P G+  +         +TVDG+EE      AD TEGFSGREI+KLAIAWQAAAY
Sbjct:   17 ISEDLRNALNAFLYRTGEATDRFMVVYASNQPEQFDDAINDRIDEMVHFKLPGLEERQRMLTHYLRHYLLDGHHHGEDIFDQKTDGKPAGKSVSGFFGAAPTQVTVDGIEERHIRFAADRTEGFSGREISKLAIAWQAAAY 157          
BLAST of mRNA_L-elsbetiae_contig178.5066.1 vs. uniprot
Match: A0A7S2WW12_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW12_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.510e-41
Identity = 80/124 (64.52%), Postives = 93/124 (75.00%), Query Frame = 2
Query:    5 ISEDLRNALNAFLYRTGESTDKFMLVHVSNQPEQFD*AVNDRVNEMVPFGLPGREERLRMVNLYMKGYLLDP--------PGRVKAITVDGVEE-----VADLTEGFSGREIAKLAIAWQAAAY 337
            +SEDLRNALNAFLYRTGE T+KFMLV+ SNQPEQFD A+NDR++EMV F LP +EER+RM+ LYM  YL           P   K I V+GVE+     +AD TEGFSGREI+KLAIAWQAAAY
Sbjct:   86 MSEDLRNALNAFLYRTGEPTNKFMLVYASNQPEQFDWAINDRIDEMVEFALPSKEERVRMIQLYMDKYLYRSGEGGGFFSPASTK-ILVNGVEDSNIESIADRTEGFSGREISKLAIAWQAAAY 208          
BLAST of mRNA_L-elsbetiae_contig178.5066.1 vs. uniprot
Match: A0A7S2B508_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B508_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.610e-40
Identity = 74/116 (63.79%), Postives = 90/116 (77.59%), Query Frame = 2
Query:    5 ISEDLRNALNAFLYRTGESTDKFMLVHVSNQPEQFD*AVNDRVNEMVPFGLPGREERLRMVNLYMKGYLLDPPGRVKAITVDGVEE-----VADLTEGFSGREIAKLAIAWQAAAY 337
            ISED+RNALNAFLYRTGE++DKFM+V+ SNQPEQFD A++DR++EMV F LP  +ERLRM+  YM   LL      + IT++G+ E     VAD TEGFSGREI KLA+AWQAAAY
Sbjct:    3 ISEDMRNALNAFLYRTGEASDKFMVVYASNQPEQFDGAISDRIDEMVEFSLPNEQERLRMIVHYMDK-LLSAKTNAQTITIEGITEDLVLGVADKTEGFSGREINKLAVAWQAAAY 117          
BLAST of mRNA_L-elsbetiae_contig178.5066.1 vs. uniprot
Match: A0A4D9D134_9STRA (AAA domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D134_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.930e-40
Identity = 78/117 (66.67%), Postives = 97/117 (82.91%), Query Frame = 2
Query:    5 ISEDLRNALNAFLYRTGESTDKFMLVHVSNQPEQFD*AVNDRVNEMVPFGLPGREERLRMVNLYMKGYLLDPPG-RVKAITVDGV--EEV---ADLTEGFSGREIAKLAIAWQAAAY 337
            +SE+LRNALNAFLYRTGE++DKFM+V  SNQPEQFD A+NDR++EMV F LPG EERL MV +Y++ Y+L+PP  + + ITV+G+  EEV   A +T GFSGREI+KLAIAWQAAAY
Sbjct:  425 MSEELRNALNAFLYRTGEASDKFMVVFASNQPEQFDWAINDRIDEMVDFNLPGEEERLEMVTIYLEKYVLNPPSTKARPITVEGIGEEEVKYAAKVTVGFSGREISKLAIAWQAAAY 541          
BLAST of mRNA_L-elsbetiae_contig178.5066.1 vs. uniprot
Match: A0A836C9L2_9STRA (AAA domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9L2_9STRA)

HSP 1 Score: 147 bits (371), Expect = 1.800e-39
Identity = 77/116 (66.38%), Postives = 90/116 (77.59%), Query Frame = 2
Query:    5 ISEDLRNALNAFLYRTGESTDKFMLVHVSNQPEQFD*AVNDRVNEMVPFGLPGREERLRMVNLYMKGYLLDPPGRVKAITVDGVEE-----VADLTEGFSGREIAKLAIAWQAAAY 337
            ISED+RNALNAFLYRTGE+TD+FM+V+ SNQPEQFD A+NDR++E+VPF LPG EER RM++ YM  YLL+       I   GVEE      A  TEGFSGREI+KLAIAWQAAAY
Sbjct:  389 ISEDMRNALNAFLYRTGEATDRFMVVYASNQPEQFDDAINDRIDELVPFDLPGVEERRRMLDSYMLKYLLEAHAARSGIAALGVEEHHMAAAAAATEGFSGREISKLAIAWQAAAY 504          
BLAST of mRNA_L-elsbetiae_contig178.5066.1 vs. uniprot
Match: A0A7S2GXT8_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GXT8_9STRA)

HSP 1 Score: 137 bits (344), Expect = 2.030e-38
Identity = 71/117 (60.68%), Postives = 86/117 (73.50%), Query Frame = 2
Query:    5 ISEDLRNALNAFLYRTGESTDKFMLVHVSNQPEQFD*AVNDRVNEMVPFGLPGREERLRMVNLYMKGYLLDPPGR-VKAITV-----DGVEEVADLTEGFSGREIAKLAIAWQAAAY 337
            ISED RNALNAFLYRTG  + +FM+V+ SNQP QFD A+ DR++EMV FGLPG  ER  M+  Y++ YL++PPGR  K +T      D +E V   TEGFSGR I+KLAIAWQAAAY
Sbjct:   50 ISEDQRNALNAFLYRTGTESSQFMMVYASNQPSQFDEAIMDRIDEMVEFGLPGEHERRTMIAQYIEKYLINPPGRWTKKVTTVDIGDDEIERVVHQTEGFSGRAISKLAIAWQAAAY 166          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig178.5066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LJ37_9PHAE1.130e-5583.76AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YR91_9STRA1.710e-4774.14AAA domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2Y4I1_9STRA2.160e-4471.19Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3HKW4_9STRA1.160e-4164.66Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2V1G8_9STRA1.240e-4158.16Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2WW12_9STRA1.510e-4164.52Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2B508_9STRA1.610e-4063.79Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A4D9D134_9STRA1.930e-4066.67AAA domain-containing protein n=3 Tax=Monodopsidac... [more]
A0A836C9L2_9STRA1.800e-3966.38AAA domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A7S2GXT8_9STRA2.030e-3860.68Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig178contigL-elsbetiae_contig178:6658..8680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size343
Cds size339
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig178.5066.1prot_L-elsbetiae_contig178.5066.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig178 6658..8678 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815741.5112267-CDS-L-elsbetiae_contig178:6657..67211622815741.5112267-CDS-L-elsbetiae_contig178:6657..6721Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig178 6658..6721 +
1691683072.618464-CDS-L-elsbetiae_contig178:6657..67211691683072.618464-CDS-L-elsbetiae_contig178:6657..6721Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig178 6658..6721 +
1622815741.5240211-CDS-L-elsbetiae_contig178:7391..75861622815741.5240211-CDS-L-elsbetiae_contig178:7391..7586Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig178 7392..7586 +
1691683072.6286952-CDS-L-elsbetiae_contig178:7391..75861691683072.6286952-CDS-L-elsbetiae_contig178:7391..7586Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig178 7392..7586 +
1622815741.5345614-CDS-L-elsbetiae_contig178:8598..86781622815741.5345614-CDS-L-elsbetiae_contig178:8598..8678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig178 8599..8678 +
1691683072.6381013-CDS-L-elsbetiae_contig178:8598..86781691683072.6381013-CDS-L-elsbetiae_contig178:8598..8678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig178 8599..8678 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig178.5066.1

>prot_L-elsbetiae_contig178.5066.1 ID=prot_L-elsbetiae_contig178.5066.1|Name=mRNA_L-elsbetiae_contig178.5066.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
DHQRGPAQRPERLPLPHGRVHGQVYAGARVEPAGAVRLGGKRPGQRDGAL
RPPRPRRAAAHGEPLHEGLPPGPSRQGQGHHGRRGGGSGGPDGGLLGARD
RQACHRVAGGGVR
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mRNA from alignment at L-elsbetiae_contig178:6658..8680+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig178.5066.1 ID=mRNA_L-elsbetiae_contig178.5066.1|Name=mRNA_L-elsbetiae_contig178.5066.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2023bp|location=Sequence derived from alignment at L-elsbetiae_contig178:6658..8680+ (Laminarionema elsbetiae ELsaHSoW15)
GACCATCAGCGAGGACCTGCGCAACGCCCTGAACGCCTTCCTCTACCGCA CGGGAGAGTCCACGGTGAGAGCTACATACGGCTGTTCGCTCCTCCCATCG CATCACATCATCACAGCGTGCATGAAACGCGAAAAAAAGAGATTCGAGAC GTCCTTTTATCACTGCTGTATCGTGGTGGTGAAGCTGTGGTGGTTGGAGA GTCTGCGTATAGTTTTGGTCCGTTGTACACCTGCATCACGTTACGGTTGC GGTAGAAAGAAGTCCAATCCGGCTTGAAAGCCAGTATGTAGTGACAATGA ACGGTCACTGGACAGTCCGGCTTGGAAGCCAGTGGTGATCATGAACGGTC ACTGGGCAGTCATGTGTGTCAGTCAGTCCGGCTTGGAAGCCAGTAGTGAC AGTGAACGGTCATTGGACAGTCATATATGTCACTGGACTGCCGGGCGAAA ATTCACGCGTATATCCATGTTCAGGGTGCCGAAAAACGGCTTCATCGTCT TCTTGCTCTTGGTTGCCGTCCTTGCTATTGTCTCCCACACCCCCTCTTCG CCCTCTCCATGTCCGCATTCCTGTCTTGCGTCAGATGTGCCCATTTTGCC GTCAACGCAGCACGGAAAGCTTACGTTTATTCGTCCGTGCCGCTTTGTCT CGTTTGTCTCGTTTGTTTTTTCTTGTGTGGGGTGTGCTGCACAAACGCCA TGTGATTCCATACATACACCGCAAACGCGCACAGGACAAGTTTATGCTGG TGCACGTGTCGAACCAGCCGGAGCAGTTCGACTAGGCGGTAAACGACCGG GTCAACGAGATGGTGCCCTTCGGCCTCCCCGGCCGCGAAGAGCGGCTGCG CATGGTGAACCTCTACATGAAGGGCTACCTCCTGGACCCTCCCGGCAGGG TCAAGGCCATCACGGTCGACGGGGTGGAGGTGAGAAATAGGAAACCAAGC GTCACGCACAAACAAACGCGAACGCGTTCAGCGGATGTGGACTGATCGTG ACTTCATGCTTCGTGTGATATGTATTTATGTAAACATACACGAGTTTCTA GTTTTCCGCAGGCATTATATTATGCATGTTGGCGTTCGATTTTCCGACTT GCTATAATATGGAGAGGATGTTTTAGACATAACTCTTGTGATAATCGAGA CATCAGGAATTGCGTGTTGAGGAGACCTATCCAACGACCTCCAATCTTCG CGGAGCCCCTCCAAAGTGATCACTTGGCGCCTGGCCTGCTAGAGAGATTG GCTGCCGCCGTTGCTTACTTTTCAGCGCACGCCTGCCAGAAGGATGGCGC TTTACGACACTCGGATGAAGTCCGATCGAGAATCACAGAGCGGGGAGGGT AGGACGGGGGAGGGGGGGCTATGAACGGTTCCGGCGAACGGAACCCACAC AAGTGCGTTTTCGTCTGGATTCGCTTCGTTTGCCGTCCTGTCCTGTGTTG AAGCTCTCCTTTTACTGTTTTCTCAGCGGATGTTGGAATACACGCGCATG TAAAAAGCACCATCGGCGCGGCACACGCGGATTTCCGTATTTTACTCGCG ACCCTCCTGTTGCTGCGGTCGTACATATACCAGCCGAGAGATCGGCGTAT TTGCTGCCAGAGGTCTGTCTCCGTGTGTGCGAATGTGAATGTGTTGGGTG TGCCGGCGCGCGATCGCAGCAACCGCGCTAACTAGTTGACCAATGAGATG CTGCCACCCTAAATATGTATGTAAGCGGGTAAAAATCGAGGGATTCCGAT GAGGGGCAAACACTCAGATTTCGATAACGCGCGCGCACACTGTCTCTCTG TGTGTTTCGTGTTTTTATGTTTTTGGCCTTTGGTGTTTTGGCATCCGCCG TGCGTGTTGTCGATTCTCCGCTGCCCTATGTATGTACCCGTCGGTTCGTC TCTCAATCCGCCGTGCCGCCCCACGGGACCCTCACCTGCAGGAAGTGGCG GACCTGACGGAGGGCTTCTCGGGGCGAGAGATCGCCAAGCTTGCCATCGC GTGGCAGGCGGCGGCGTACGGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig178:6658..8680+

>mRNA_L-elsbetiae_contig178.5066.1 ID=mRNA_L-elsbetiae_contig178.5066.1|Name=mRNA_L-elsbetiae_contig178.5066.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig178:6658..8680+ (Laminarionema elsbetiae ELsaHSoW15)
GACCATCAGCGAGGACCTGCGCAACGCCCTGAACGCCTTCCTCTACCGCA
CGGGAGAGTCCACGGACCATCAGCGAGGACCTGCGCAACGCCCTGAACGC
CTTCCTCTACCGCACGGGAGAGTCCACGGACAAGTTTATGCTGGTGCACG
TGTCGAACCAGCCGGAGCAGTTCGACTAGGCGGTAAACGACCGGGTCAAC
GAGATGGTGCCCTTCGGCCTCCCCGGCCGCGAAGAGCGGCTGCGCATGGT
GAACCTCTACATGAAGGGCTACCTCCTGGACCCTCCCGGCAGGGTCAAGG
CCATCACGGTCGACGGGGTGGAGGACAAGTTTATGCTGGTGCACGTGTCG
AACCAGCCGGAGCAGTTCGACTAGGCGGTAAACGACCGGGTCAACGAGAT
GGTGCCCTTCGGCCTCCCCGGCCGCGAAGAGCGGCTGCGCATGGTGAACC
TCTACATGAAGGGCTACCTCCTGGACCCTCCCGGCAGGGTCAAGGCCATC
ACGGTCGACGGGGTGGAGGAAGTGGCGGACCTGACGGAGGGCTTCTCGGG
GCGAGAGATCGCCAAGCTTGCCATCGCGTGGCAGGCGGCGGCGTACGGGA
AGTGGCGGACCTGACGGAGGGCTTCTCGGGGCGAGAGATCGCCAAGCTTG
CCATCGCGTGGCAGGCGGCGGCGTACGG
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