mRNA_L-elsbetiae_contig17618.4976.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17618.4976.1
Unique NamemRNA_L-elsbetiae_contig17618.4976.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17618.4976.1 vs. uniprot
Match: D7G4B2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B2_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.460e-21
Identity = 41/45 (91.11%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:    1 SGVTPLHRAAEVNSCQVAQVLINAEASVNARTAWGWYAPLHFALQ 135
            SGVTPLHRAAEVNSCQVAQVLINA+ASVN RT+WGWYAPLHFAL+
Sbjct:    9 SGVTPLHRAAEVNSCQVAQVLINADASVNVRTSWGWYAPLHFALK 53
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BLAST of mRNA_L-elsbetiae_contig17618.4976.1 vs. uniprot
Match: A0A7S4A937_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A937_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.720e-9
Identity = 35/96 (36.46%), Postives = 52/96 (54.17%), Query Frame = 1 
Query:    1 SGVTPLHRAAEVNSCQVAQVLINAEASVNARTAWGWYAPLHFALQNGHEQVAEILLQAGAKWT--------ILTKRLQTPYDLAVSRGLKIQALRI 264
            SG+T LHRAA+V   ++ + L+   A  +A+T  G   PLH A+  GHE+ A  LL+ GA W          +  R +TP   AV +G ++ A R+
Sbjct:   34 SGMTLLHRAADVAQVEIIKYLMELGADASAKTFRGGDTPLHLAVSAGHEKAAMALLEGGAPWVPSKQKPKMAVNNRGETPMRTAVRKGYQLMAQRL 129
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BLAST of mRNA_L-elsbetiae_contig17618.4976.1 vs. uniprot
Match: A0A8K1CK32_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CK32_PYTOL)

HSP 1 Score: 52.8 bits (125), Expect = 5.480e-6
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:   10 TPLHRAAEVNSCQVAQVLINAEASVNARTAWGWYAPLHFALQNGHEQVAEILLQAGAKWTILT 198
            T LH AAE     +A++LINA A VNAR A GW APLH A  +GH +V ++L+++ A    LT
Sbjct:  312 TALHLAAENGDEDIAELLINAGALVNARNAAGW-APLHIAALDGHLRVVQLLVRSRADIDSLT 373
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BLAST of mRNA_L-elsbetiae_contig17618.4976.1 vs. uniprot
Match: UPI00033365C3 (2-5A-dependent ribonuclease n=1 Tax=Echinops telfairi TaxID=9371 RepID=UPI00033365C3)

HSP 1 Score: 49.3 bits (116), Expect = 8.970e-5
Identity = 29/72 (40.28%), Postives = 39/72 (54.17%), Query Frame = 1 
Query:   25 AAEVNSCQVAQVLINAEASVNARTAWGWYAPLHFALQNGHEQVAEILLQAGAKWTILTKRLQTPYDLAVSRG 240
            AA     + AQ L+   A VN +  WGW APLH A+QNG E + ++LL  GA   +  +   TP+ LA   G
Sbjct:   32 AARTGDVEKAQQLLERGADVNFQDEWGW-APLHNAVQNGKENLVDLLLLHGADPRLRKRNGATPFILAGIAG 102
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17618.4976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G4B2_ECTSI1.460e-2191.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4A937_9STRA1.720e-936.46Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8K1CK32_PYTOL5.480e-649.21Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI00033365C38.970e-540.282-5A-dependent ribonuclease n=1 Tax=Echinops telfa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17618contigL-elsbetiae_contig17618:2164..3144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue1.3e-12
Seed eggNOG ortholog36331.EPrPI00000019221
Hectar predicted targeting categoryother localisation
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG0666@1,KOG2319@2759
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-02_002030.1
Exons2
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815734.439063-CDS-L-elsbetiae_contig17618:2163..22901622815734.439063-CDS-L-elsbetiae_contig17618:2163..2290Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17618 2164..2290 -
1691683068.3372672-CDS-L-elsbetiae_contig17618:2163..22901691683068.3372672-CDS-L-elsbetiae_contig17618:2163..2290Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17618 2164..2290 -
1622815734.4494815-CDS-L-elsbetiae_contig17618:3007..31441622815734.4494815-CDS-L-elsbetiae_contig17618:3007..3144Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17618 3008..3144 -
1691683068.3537986-CDS-L-elsbetiae_contig17618:3007..31441691683068.3537986-CDS-L-elsbetiae_contig17618:3007..3144Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17618 3008..3144 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17618.4976.1prot_L-elsbetiae_contig17618.4976.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17618 2164..3144 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17618.4976.1

>prot_L-elsbetiae_contig17618.4976.1 ID=prot_L-elsbetiae_contig17618.4976.1|Name=mRNA_L-elsbetiae_contig17618.4976.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=88bp
SGVTPLHRAAEVNSCQVAQVLINAEASVNARTAWGWYAPLHFALQNGHEQ
VAEILLQAGAKWTILTKRLQTPYDLAVSRGLKIQALRI
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mRNA from alignment at L-elsbetiae_contig17618:2164..3144-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17618.4976.1 ID=mRNA_L-elsbetiae_contig17618.4976.1|Name=mRNA_L-elsbetiae_contig17618.4976.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=981bp|location=Sequence derived from alignment at L-elsbetiae_contig17618:2164..3144- (Laminarionema elsbetiae ELsaHSoW15)
AGCGGGGTGACACCTCTTCACAGAGCGGCCGAGGTCAACAGTTGCCAGGT
TGCGCAGGTGCTCATCAACGCGGAGGCAAGCGTGAATGCAAGAACAGCCT
GGGGGTGGTACGCCCCGTTGCATTTCGCACTACAAAAGTGAGAGAGCAGC
CCTGGGTAGCTCGTTGTAAGAAACCAGGCACGCATCTATTAATAAATCAG
CGACCAGGTTGCAGTCTGGATAACCTAGTGGTCAGACTGCCGTCGTTCGT
GTTTTGGCCCAGACTCTGAAGTATTGAGTCTTCAAAATTCAATAGAGGTT
CGATACAAAATGATATCGGAACCCTGCTAGATAATTTAGTTCCATATGTA
GCGTGGCGAAAGCACTCGCAAAAAGTGCTGACACATGGCGCGTCCTCGAG
GCCGTTCGTCGCATCAGATGACCTCGCATCGGGGCACTTCGTGTCTTTGT
ACAAAACAGCCCTGATATGTTCCAGGCGACTACATAGTCTGCTGCACGCG
TAGGTTTTGTGCTCATTCGAGCAGAGGAGGCCGACTTCCGTCAACACGTG
CTACAGGAACGGATCGTTGTCAAGTTCATTTTCTAAACTTGCACGCCGGG
TCTGGATGTCAAGGACGTGAAGTCTAAGGCCGTCGAATGATCAGAACAGC
CCTTTCCGACGCACCTTTGCATCGTGTTCCCAACAAATCTTCGCCCATGT
ATAACCTTCTTTTCACCTCACCCACCCCTTCTGTCATATTTCCAGAAGAT
GCGCTCAAAAATTAGTGCAAAGGTTTTTAGCCCAGACCTGTGAGCCCTAC
CGAGGTCACCATCCTCTCATTGTTTTTTTGCACCTCAATTTTTATCTGAA
ACAGCGGGCACGAGCAAGTGGCCGAGATACTGCTGCAGGCAGGTGCCAAG
TGGACAATACTTACGAAACGGCTGCAGACGCCCTATGACCTGGCCGTCTC
ACGCGGGCTCAAGATCCAAGCATTGAGAATA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17618:2164..3144-

>mRNA_L-elsbetiae_contig17618.4976.1 ID=mRNA_L-elsbetiae_contig17618.4976.1|Name=mRNA_L-elsbetiae_contig17618.4976.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=528bp|location=Sequence derived from alignment at L-elsbetiae_contig17618:2164..3144- (Laminarionema elsbetiae ELsaHSoW15)
AGCGGGGTGACACCTCTTCACAGAGCGGCCGAGGTCAACAGTTGCCAGGT
TGCGCAGGTGCTCATCAACGCGGAGGCAAGCGTGAATGCAAGAACAGCCT
GGGGGTGGTACGCCCCGTTGCATTTCGCACTACAAAAAGCGGGGTGACAC
CTCTTCACAGAGCGGCCGAGGTCAACAGTTGCCAGGTTGCGCAGGTGCTC
ATCAACGCGGAGGCAAGCGTGAATGCAAGAACAGCCTGGGGGTGGTACGC
CCCGTTGCATTTCGCACTACAAAACGGGCACGAGCAAGTGGCCGAGATAC
TGCTGCAGGCAGGTGCCAAGTGGACAATACTTACGAAACGGCTGCAGACG
CCCTATGACCTGGCCGTCTCACGCGGGCTCAAGATCCAAGCATTGAGAAT
ACGGGCACGAGCAAGTGGCCGAGATACTGCTGCAGGCAGGTGCCAAGTGG
ACAATACTTACGAAACGGCTGCAGACGCCCTATGACCTGGCCGTCTCACG
CGGGCTCAAGATCCAAGCATTGAGAATA
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