mRNA_L-elsbetiae_contig1758.4957.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1758.4957.1
Unique NamemRNA_L-elsbetiae_contig1758.4957.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1758.4957.1 vs. uniprot
Match: D8LAZ7_ECTSI (Transcription initiation factor TFIID subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAZ7_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 5.460e-35
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:    1 LLKDAGVTSYEPRVVNHLVDRMRRYTLEVVQDARDYADHAGRVDIGMDDVRLAVRKKQDALSAGPPTRE 207
            LLKDAGVTSYEPRVV+HLVDRMRRYT EV+ DARDYADHAGR D+GM DVRLAVRKKQDALSAGPP+RE
Sbjct:    3 LLKDAGVTSYEPRVVSHLVDRMRRYTREVLIDARDYADHAGRTDLGMQDVRLAVRKKQDALSAGPPSRE 71
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BLAST of mRNA_L-elsbetiae_contig1758.4957.1 vs. uniprot
Match: A0A8B7Y458_ACAPL (transcription initiation factor TFIID subunit 9-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Y458_ACAPL)

HSP 1 Score: 73.9 bits (180), Expect = 3.100e-14
Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    1 LLKDAGVTSYEPRVVNHLVDRMRRYTLEVVQDARDYADHAGRVDIGMDDVRLAVRKKQDALSAGPPTRE 207
            +LKD G+T YEPR+VN +++   RY  +V++DA+ Y+ HAGR +I  DDV+LA++ + D     PP RE
Sbjct:   19 ILKDMGITEYEPRLVNQMLEFTYRYVTDVLEDAQAYSSHAGRTEIDSDDVKLAIQSRLDHSFTTPPPRE 87
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BLAST of mRNA_L-elsbetiae_contig1758.4957.1 vs. uniprot
Match: UPI0018D789BF (transcription initiation factor TFIID subunit 9-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D789BF)

HSP 1 Score: 73.9 bits (180), Expect = 3.100e-14
Identity = 33/69 (47.83%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:    1 LLKDAGVTSYEPRVVNHLVDRMRRYTLEVVQDARDYADHAGRVDIGMDDVRLAVRKKQDALSAGPPTRE 207
            +LKD GVT YEPR+VN +++   RY  +V++DA+ Y++HAGR +I  DDV+LA++ + D     PP RE
Sbjct:   19 ILKDMGVTEYEPRLVNQMLEFTYRYVTDVLEDAQAYSNHAGRTEIDSDDVKLAIQGRLDHSFTTPPPRE 87
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BLAST of mRNA_L-elsbetiae_contig1758.4957.1 vs. uniprot
Match: UPI00145569A7 (transcription initiation factor TFIID subunit 9-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI00145569A7)

HSP 1 Score: 72.8 bits (177), Expect = 7.330e-14
Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    1 LLKDAGVTSYEPRVVNHLVDRMRRYTLEVVQDARDYADHAGRVDIGMDDVRLAVRKKQDALSAGPPTRE 207
            +LKD GV+ YEPR+VN +++   RY  +V++DA+ Y  HAGR +I +DDV+LA++ + D     PP RE
Sbjct:   20 ILKDMGVSDYEPRLVNQMLEFTYRYMTDVLEDAQAYTGHAGRTEIDVDDVKLAIKSRLDHSFTTPPPRE 88
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BLAST of mRNA_L-elsbetiae_contig1758.4957.1 vs. uniprot
Match: A0A6J3BY69_GALME (transcription initiation factor TFIID subunit 9 n=1 Tax=Galleria mellonella TaxID=7137 RepID=A0A6J3BY69_GALME)

HSP 1 Score: 72.4 bits (176), Expect = 9.700e-14
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:    1 LLKDAGVTSYEPRVVNHLVDRMRRYTLEVVQDARDYADHAGRVDIGMDDVRLAVRKKQDALSAGPPTREV 210
            ++K+ GVT YEPRVVN L++   RY   ++ DAR +A+HA +  I +DDVRLAV+ + D     PP REV
Sbjct:   26 IMKEVGVTDYEPRVVNQLLEFTYRYVTSILDDARVFANHAKKKTIDLDDVRLAVQMQLDKTFTSPPQREV 95
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BLAST of mRNA_L-elsbetiae_contig1758.4957.1 vs. uniprot
Match: A0A556UYM4_BAGYA (Transcription initiation factor TFIID subunit 9 n=3 Tax=Teleostei TaxID=32443 RepID=A0A556UYM4_BAGYA)

HSP 1 Score: 72.0 bits (175), Expect = 9.960e-14
Identity = 29/69 (42.03%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:    1 LLKDAGVTSYEPRVVNHLVDRMRRYTLEVVQDARDYADHAGRVDIGMDDVRLAVRKKQDALSAGPPTRE 207
            +LKD G+T YEPRV+N +++ M RY   +++DA+ YA HA +  +  DD+RLA++ + D     PP R+
Sbjct:   17 ILKDMGITEYEPRVINQMLEFMYRYVTTIIEDAKIYATHAKKTSVDADDIRLAIQCRMDQSFTSPPPRD 85
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BLAST of mRNA_L-elsbetiae_contig1758.4957.1 vs. uniprot
Match: A0A2D0SZ54_ICTPU (transcription initiation factor TFIID subunit 9-like isoform X1 n=23 Tax=Osteoglossocephalai TaxID=1489341 RepID=A0A2D0SZ54_ICTPU)

HSP 1 Score: 72.4 bits (176), Expect = 1.120e-13
Identity = 29/69 (42.03%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:    1 LLKDAGVTSYEPRVVNHLVDRMRRYTLEVVQDARDYADHAGRVDIGMDDVRLAVRKKQDALSAGPPTRE 207
            +LKD G+T YEPRV+N +++ M RY   +++DA+ YA HA + ++  DD+RLA++ + D     PP R+
Sbjct:   17 ILKDMGITEYEPRVINQMLEFMYRYVTTIIEDAKIYATHAKKANVDADDIRLAIQCRMDQSFTSPPPRD 85
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BLAST of mRNA_L-elsbetiae_contig1758.4957.1 vs. uniprot
Match: A0A821WNC1_9NEOP (Hypothetical protein n=4 Tax=Pieris TaxID=7115 RepID=A0A821WNC1_9NEOP)

HSP 1 Score: 72.0 bits (175), Expect = 1.270e-13
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:    1 LLKDAGVTSYEPRVVNHLVDRMRRYTLEVVQDARDYADHAGRVDIGMDDVRLAVRKKQDALSAGPPTREV 210
            ++K+ G+T YEPRVVN L++   RY   V+ DAR +A+HA +  I +DDVRLAV+ + D     PP REV
Sbjct:   26 IMKEVGITDYEPRVVNQLLEFTYRYVTSVLDDARVFANHARKKTIDLDDVRLAVQMQLDKSFTSPPPREV 95
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BLAST of mRNA_L-elsbetiae_contig1758.4957.1 vs. uniprot
Match: UPI0018E4E058 (transcription initiation factor TFIID subunit 9 n=2 Tax=Coliadinae TaxID=42450 RepID=UPI0018E4E058)

HSP 1 Score: 72.0 bits (175), Expect = 1.270e-13
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:    1 LLKDAGVTSYEPRVVNHLVDRMRRYTLEVVQDARDYADHAGRVDIGMDDVRLAVRKKQDALSAGPPTREV 210
            ++K+ G+T YEPRVVN L++   RY   V+ DAR +A+HA +  I +DDVRLAV+ + D     PP REV
Sbjct:   26 IMKEVGITDYEPRVVNQLLEFTYRYVTSVLDDARVFANHAKKKTIDLDDVRLAVQMQLDKSFTSPPPREV 95
[Close]
BLAST of mRNA_L-elsbetiae_contig1758.4957.1 vs. uniprot
Match: A0A212EUX8_DANPL (transcription initiation factor TFIID subunit 9 n=1 Tax=Danaus plexippus plexippus TaxID=278856 RepID=A0A212EUX8_DANPL)

HSP 1 Score: 72.0 bits (175), Expect = 1.300e-13
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:    1 LLKDAGVTSYEPRVVNHLVDRMRRYTLEVVQDARDYADHAGRVDIGMDDVRLAVRKKQDALSAGPPTREV 210
            ++K+ G+T YEPRV+N L++   RY   V++DAR +A+HA + +I +DDVRLAV+ + D     PP REV
Sbjct:   26 IMKEIGITDYEPRVLNQLLEFTYRYVTSVLEDARVFANHAKKKNIDLDDVRLAVQMQLDKSFTSPPPREV 95
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1758.4957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAZ7_ECTSI5.460e-3588.41Transcription initiation factor TFIID subunit n=2 ... [more]
A0A8B7Y458_ACAPL3.100e-1446.38transcription initiation factor TFIID subunit 9-li... [more]
UPI0018D789BF3.100e-1447.83transcription initiation factor TFIID subunit 9-li... [more]
UPI00145569A77.330e-1446.38transcription initiation factor TFIID subunit 9-li... [more]
A0A6J3BY69_GALME9.700e-1448.57transcription initiation factor TFIID subunit 9 n=... [more]
A0A556UYM4_BAGYA9.960e-1442.03Transcription initiation factor TFIID subunit 9 n=... [more]
A0A2D0SZ54_ICTPU1.120e-1342.03transcription initiation factor TFIID subunit 9-li... [more]
A0A821WNC1_9NEOP1.270e-1348.57Hypothetical protein n=4 Tax=Pieris TaxID=7115 Rep... [more]
UPI0018E4E0581.270e-1348.57transcription initiation factor TFIID subunit 9 n=... [more]
A0A212EUX8_DANPL1.300e-1347.14transcription initiation factor TFIID subunit 9 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1758contigL-elsbetiae_contig1758:22186..23108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue5.7e-27
Seed eggNOG ortholog2880.D8LAZ7
Preferred nameTAF9
KEGG koko:K02868,ko:K03133,ko:K05030,ko:K14535
KEGG TC1.A.13.1
KEGG Pathwayko03010,ko03022,ko04924,ko04972,ko05168,map03010,map03022,map04924,map04972,map05168
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000123,GO:0000124,GO:0000228,GO:0000428,GO:0000785,GO:0000790,GO:0000988,GO:0000990,GO:0000991,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005694,GO:0006139,GO:0006325,GO:0006338,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006996,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016569,GO:0016570,GO:0016573,GO:0016591,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022607,GO:0030880,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032774,GO:0032947,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043933,GO:0043966,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044798,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046695,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051123,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070461,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902493,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1905368,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.RNA polymerase II transcriptional preinitiation complex assembly
EggNOG OGsCOG5094@1,KOG3334@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03021,ko03036,ko04040
Ec32 ortholog descriptionTranscription initiation factor TAFII31
Ec32 orthologEc-27_005820.1
Exons2
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815732.1234243-CDS-L-elsbetiae_contig1758:22185..222551622815732.1234243-CDS-L-elsbetiae_contig1758:22185..22255Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1758 22186..22255 +
1691683066.6528356-CDS-L-elsbetiae_contig1758:22185..222551691683066.6528356-CDS-L-elsbetiae_contig1758:22185..22255Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1758 22186..22255 +
1622815732.1392715-CDS-L-elsbetiae_contig1758:22962..231081622815732.1392715-CDS-L-elsbetiae_contig1758:22962..23108Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1758 22963..23108 +
1691683066.6675336-CDS-L-elsbetiae_contig1758:22962..231081691683066.6675336-CDS-L-elsbetiae_contig1758:22962..23108Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1758 22963..23108 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1758.4957.1prot_L-elsbetiae_contig1758.4957.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1758 22186..23108 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1758.4957.1

>prot_L-elsbetiae_contig1758.4957.1 ID=prot_L-elsbetiae_contig1758.4957.1|Name=mRNA_L-elsbetiae_contig1758.4957.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=72bp
LLKDAGVTSYEPRVVNHLVDRMRRYTLEVVQDARDYADHAGRVDIGMDDV
RLAVRKKQDALSAGPPTREVR*
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mRNA from alignment at L-elsbetiae_contig1758:22186..23108+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1758.4957.1 ID=mRNA_L-elsbetiae_contig1758.4957.1|Name=mRNA_L-elsbetiae_contig1758.4957.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=923bp|location=Sequence derived from alignment at L-elsbetiae_contig1758:22186..23108+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCTCAAGGATGCAGGGGTTACATCGTACGAGCCGAGAGTAGTGAACCA
CCTGGTGGACCGCATGCGGAGTGAGTACACCTCTTCATGCGGGGTATGTC
CCGCGTTTTCGGCGTCTTCATACCGGCCCGGGCTGTTGTGTTGCAGCTCC
AGGGAACGACTTCCATACGAAGTAGAAGTATCACGTTAGCTTGCGTTGGA
TGAATCGAATTGAACCTCTTGCGAATACAGCGAGGGCGCCGCGAGCTAAA
GTTGGCTGTATATTTCGGACCCAGACCACATCCCTGCAGTTCGACAGGCA
CCTTTTGCCTCCATACATAGGCACCAAACGGCACCTGTTTGTACGCGAAA
CGTCGTGCGGCTCCCACAGACTCTACGCAGAGTCGTTAGGTTCTCGCGTA
TTGCTCCGGTGTGTGGGTGTGTGAGCTATTATTTTGCATGCGGCAGCTAC
ATATATAGATCGATGTCGCGGGGACGTCGTTCTTTTGTTCCAGCCCCAAA
ATGGCAAGTTTTGGCATGAAGAGCCGTGTGTTCGTCTCCCCGCAGTTTTC
TCCTGCTTCCCTGCTTCCTTAGGCGATGCGCTGCTGTTGGGTGGCTGTCG
TTCCTGTCCATTGCATCCTCCGTGTCTTCTGCCACCCCCATTTCCCTCTC
TTGCGCATCCATGCGCGCGTGCAACCGATTTCTGCAAGCCCGCCAAACCA
GAAGAATGAGTGCCACATAGAAAAATGCATCCTTCTATACATATAAACTC
CTTTTTTGTATATTTATGTGTGCATAGGATATACCCTCGAGGTGGTGCAG
GATGCAAGGGATTACGCGGATCACGCGGGCAGAGTCGACATCGGCATGGA
CGACGTCCGATTAGCCGTCCGCAAGAAGCAGGATGCGCTCTCCGCCGGCC
CCCCCACGAGAGAGGTACGATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1758:22186..23108+

>mRNA_L-elsbetiae_contig1758.4957.1 ID=mRNA_L-elsbetiae_contig1758.4957.1|Name=mRNA_L-elsbetiae_contig1758.4957.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=432bp|location=Sequence derived from alignment at L-elsbetiae_contig1758:22186..23108+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCTCAAGGATGCAGGGGTTACATCGTACGAGCCGAGAGTAGTGAACCA
CCTGGTGGACCGCATGCGGACTCCTCAAGGATGCAGGGGTTACATCGTAC
GAGCCGAGAGTAGTGAACCACCTGGTGGACCGCATGCGGAGATATACCCT
CGAGGTGGTGCAGGATGCAAGGGATTACGCGGATCACGCGGGCAGAGTCG
ACATCGGCATGGACGACGTCCGATTAGCCGTCCGCAAGAAGCAGGATGCG
CTCTCCGCCGGCCCCCCCACGAGAGAGGTACGATAAGATATACCCTCGAG
GTGGTGCAGGATGCAAGGGATTACGCGGATCACGCGGGCAGAGTCGACAT
CGGCATGGACGACGTCCGATTAGCCGTCCGCAAGAAGCAGGATGCGCTCT
CCGCCGGCCCCCCCACGAGAGAGGTACGATAA
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